Wall clock time and date at job start Wed Apr 1 2020 01:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30014 * 127.33504 * 2 1 4 4 O 1.20647 * 112.30092 * 179.67832 * 3 2 1 5 5 C 1.33493 * 113.15976 * 0.50704 * 4 3 2 6 6 C 1.50703 * 126.83244 * 179.77628 * 5 4 3 7 7 F 1.39904 * 109.46969 * 239.68600 * 6 5 4 8 8 F 1.39901 * 109.47086 * 119.69004 * 6 5 4 9 9 C 1.37357 * 106.34028 * 359.51752 * 5 4 3 10 10 C 1.47395 * 128.56816 * 180.22648 * 9 5 4 11 11 O 1.21614 * 119.99803 * 89.99791 * 10 9 5 12 12 N 1.34771 * 120.00413 * 269.99716 * 10 9 5 13 13 C 1.47026 * 125.64660 * 359.69672 * 12 10 9 14 14 C 1.54317 * 107.27623 * 180.96597 * 13 12 10 15 15 C 1.55155 * 102.86535 * 22.52320 * 14 13 12 16 16 H 1.09000 * 111.00569 * 82.37486 * 15 14 13 17 17 C 1.52994 * 111.00266 * 206.22852 * 15 14 13 18 18 H 1.09008 * 109.47030 * 53.65257 * 17 15 14 19 19 C 1.52993 * 109.47402 * 293.64674 * 17 15 14 20 20 N 1.46506 * 109.46710 * 173.64605 * 17 15 14 21 21 C 1.36939 * 119.99805 * 204.99723 * 20 17 15 22 22 H 1.07997 * 120.00015 * 0.02562 * 21 20 17 23 23 C 1.38810 * 119.99862 * 180.02562 * 21 20 17 24 24 N 1.31618 * 120.00187 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00005 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47268 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47333 * 120.00400 * 25 23 21 28 28 H 1.48504 * 109.47577 * 240.00650 * 25 23 21 29 29 C 1.47421 * 125.65251 * 179.97438 * 12 10 9 30 30 H 1.08999 * 109.47345 * 270.02045 * 1 2 3 31 31 H 1.09001 * 109.47029 * 30.02779 * 1 2 3 32 32 H 1.09002 * 109.46559 * 150.02625 * 1 2 3 33 33 H 1.09002 * 109.47152 * 359.68671 * 6 5 4 34 34 H 1.09003 * 109.87422 * 300.50774 * 13 12 10 35 35 H 1.08996 * 109.88682 * 61.67053 * 13 12 10 36 36 H 1.09000 * 110.91991 * 264.10393 * 14 13 12 37 37 H 1.09005 * 110.58420 * 140.78388 * 14 13 12 38 38 H 1.09002 * 109.47065 * 60.00225 * 19 17 15 39 39 H 1.08997 * 109.47225 * 179.97438 * 19 17 15 40 40 H 1.08995 * 109.47177 * 300.00445 * 19 17 15 41 41 H 0.96998 * 119.99998 * 25.00488 * 20 17 15 42 42 H 0.97000 * 119.99817 * 179.97438 * 24 23 21 43 43 H 1.09001 * 110.36930 * 274.67697 * 29 12 10 44 44 H 1.08999 * 110.36614 * 37.00274 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4607 0.7208 0.0063 5 6 3.6494 -0.6007 0.0007 6 6 4.9713 -1.3245 0.0013 7 9 5.0638 -2.1272 -1.1409 8 9 5.0632 -2.1268 1.1437 9 6 2.3992 -1.1696 0.0005 10 6 2.0401 -2.5992 -0.0001 11 8 1.8920 -3.1893 1.0530 12 7 1.8760 -3.2524 -1.1674 13 6 2.0175 -2.6624 -2.5067 14 6 1.7150 -3.7753 -3.5320 15 6 0.8608 -4.7778 -2.7118 16 1 -0.1827 -4.4646 -2.6766 17 6 0.9871 -6.1948 -3.2748 18 1 2.0406 -6.4672 -3.3400 19 6 0.3593 -6.2475 -4.6690 20 7 0.2934 -7.1350 -2.3909 21 6 0.6658 -8.4525 -2.3653 22 1 1.4711 -8.7984 -2.9963 23 6 0.0082 -9.3434 -1.5282 24 7 -0.9736 -8.9220 -0.7595 25 14 0.5166 -11.1405 -1.4928 26 1 1.6376 -11.3567 -2.4424 27 1 0.9535 -11.5044 -0.1209 28 1 -0.6367 -11.9892 -1.8864 29 6 1.5191 -4.6753 -1.3130 30 1 -0.3634 0.0004 1.0276 31 1 -0.3633 0.8897 -0.5143 32 1 -0.3632 -0.8903 -0.5135 33 1 5.7835 -0.5977 0.0013 34 1 1.3096 -1.8424 -2.6271 35 1 3.0357 -2.2994 -2.6461 36 1 2.6351 -4.2459 -3.8785 37 1 1.1438 -3.3783 -4.3712 38 1 0.8754 -5.5480 -5.3265 39 1 0.4497 -7.2569 -5.0702 40 1 -0.6940 -5.9750 -4.6037 41 1 -0.4297 -6.8242 -1.8239 42 1 -1.4333 -9.5447 -0.1749 43 1 2.4131 -5.2972 -1.2679 44 1 0.8114 -4.9701 -0.5382 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733526928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:27 Heat of formation + Delta-G solvation = -56.408524 kcal Electronic energy + Delta-G solvation = -31131.834590 eV Core-core repulsion = 26530.935181 eV Total energy + Delta-G solvation = -4600.899410 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.53874 -47.54531 -45.41263 -40.04816 -37.86864 -35.26290 -35.02378 -33.39671 -32.45496 -30.60131 -29.27804 -28.79317 -28.28535 -27.31385 -25.11558 -23.91961 -22.95302 -21.57630 -21.24638 -19.84733 -19.68850 -18.54570 -18.33084 -17.83916 -17.52783 -17.39382 -16.98361 -16.27404 -15.80825 -15.45120 -14.74205 -14.38731 -14.18901 -13.96774 -13.88547 -13.85649 -13.73895 -13.68736 -13.53755 -13.15604 -13.07001 -12.78058 -12.68508 -12.23364 -12.08622 -11.96820 -11.72042 -11.66337 -11.37695 -10.90803 -10.79551 -10.68785 -10.60305 -10.41721 -10.36537 -10.20506 -10.07194 -9.87965 -9.63213 -8.91928 -8.65084 -6.96582 -5.75657 -3.04848 0.55228 1.41930 1.81867 2.23499 2.82848 3.37143 3.44565 3.50107 3.50658 3.52475 3.61993 3.96923 4.17625 4.33105 4.42237 4.58781 4.62168 4.66940 4.87523 4.94497 5.07521 5.12398 5.22900 5.26117 5.44995 5.54679 5.61624 5.64173 5.84716 5.85110 5.89010 6.02338 6.13696 6.21873 6.29583 6.35533 6.51749 6.60072 6.82691 7.04923 7.39756 7.61531 7.71452 7.96281 8.42225 9.53920 10.09969 10.44367 11.46862 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.014932 B = 0.002966 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.779597 B = 9436.781614 C = 9741.014462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.055 3.945 3 N -0.337 5.337 4 O 0.123 5.877 5 C -0.087 4.087 6 C 0.362 3.638 7 F -0.176 7.176 8 F -0.173 7.173 9 C -0.173 4.173 10 C 0.598 3.402 11 O -0.509 6.509 12 N -0.602 5.602 13 C 0.098 3.902 14 C -0.122 4.122 15 C -0.101 4.101 16 H 0.082 0.918 17 C 0.185 3.815 18 H 0.050 0.950 19 C -0.163 4.163 20 N -0.725 5.725 21 C -0.238 4.238 22 H 0.071 0.929 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.904 3.096 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 C 0.121 3.879 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.146 0.854 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.037 0.963 39 H 0.054 0.946 40 H 0.046 0.954 41 H 0.384 0.616 42 H 0.254 0.746 43 H 0.077 0.923 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.396 22.353 -3.639 24.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 N -0.039 5.039 4 O 0.056 5.944 5 C -0.152 4.152 6 C 0.306 3.694 7 F -0.157 7.157 8 F -0.154 7.154 9 C -0.180 4.180 10 C 0.383 3.617 11 O -0.384 6.384 12 N -0.335 5.335 13 C -0.025 4.025 14 C -0.161 4.161 15 C -0.121 4.121 16 H 0.100 0.900 17 C 0.074 3.926 18 H 0.068 0.932 19 C -0.224 4.224 20 N -0.366 5.366 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.579 5.579 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.220 1.220 29 C 0.000 4.000 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.163 0.837 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.095 0.905 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.203 23.154 -3.010 25.097 hybrid contribution -0.172 -1.730 0.233 1.754 sum 9.031 21.423 -2.777 23.414 Atomic orbital electron populations 1.20310 0.84298 1.04597 1.04549 1.24870 0.99017 0.85753 1.00963 1.73604 0.88880 1.22936 1.18468 1.84539 1.21764 1.20754 1.67370 1.24946 0.97216 0.85641 1.07371 1.19214 0.92098 0.85368 0.72687 1.93110 1.96556 1.75725 1.50299 1.93154 1.96541 1.75583 1.50075 1.22276 0.92292 0.96230 1.07237 1.16388 0.78540 0.83358 0.83412 1.90912 1.50006 1.67194 1.30325 1.48459 1.67648 1.12514 1.04878 1.22126 1.01219 0.97010 0.82115 1.22675 1.01102 0.95307 0.96991 1.22692 0.99171 0.96899 0.93351 0.89982 1.20158 0.96135 0.86482 0.89792 0.93201 1.22433 1.00477 1.00889 0.98560 1.42425 1.41087 1.05444 1.47632 1.19240 1.13781 0.84909 1.19031 0.91151 1.24724 0.98614 0.98083 0.99363 1.69664 1.25240 1.34059 1.28932 0.86162 0.77548 0.85470 0.77264 1.20583 1.21884 1.21955 1.22376 1.00686 0.78534 0.98399 0.89046 0.89462 0.89347 0.83739 0.91775 0.91365 0.90055 0.89920 0.94405 0.92718 0.93513 0.78271 0.93563 0.90465 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.49 36.01 0.38 -0.32 16 2 C 0.06 0.62 7.59 -79.76 -0.61 0.02 16 3 N -0.34 -3.76 12.01 34.78 0.42 -3.34 16 4 O 0.12 1.23 11.06 18.65 0.21 1.44 16 5 C -0.09 -0.92 6.98 -34.63 -0.24 -1.16 16 6 C 0.36 3.12 5.68 36.01 0.20 3.32 16 7 F -0.18 -1.79 16.75 2.25 0.04 -1.75 16 8 F -0.17 -2.05 17.32 2.25 0.04 -2.02 16 9 C -0.17 -2.22 5.42 -102.89 -0.56 -2.78 16 10 C 0.60 9.50 7.66 -12.54 -0.10 9.41 16 11 O -0.51 -10.25 17.36 5.26 0.09 -10.16 16 12 N -0.60 -8.72 3.33 -171.79 -0.57 -9.30 16 13 C 0.10 1.08 6.46 -3.07 -0.02 1.06 16 14 C -0.12 -1.35 5.59 -24.90 -0.14 -1.49 16 15 C -0.10 -1.50 2.62 -88.46 -0.23 -1.73 16 16 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 17 C 0.18 3.34 2.40 -67.93 -0.16 3.18 16 18 H 0.05 0.93 8.05 -51.92 -0.42 0.51 16 19 C -0.16 -2.68 9.34 37.15 0.35 -2.34 16 20 N -0.72 -17.22 4.82 -53.43 -0.26 -17.48 16 21 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 22 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 25 Si 0.90 22.33 29.55 -169.99 -5.02 17.30 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 C 0.12 2.02 6.09 -2.52 -0.02 2.01 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.15 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.70 7.56 -51.93 -0.39 0.30 16 36 H 0.08 0.87 8.01 -51.93 -0.42 0.46 16 37 H 0.08 0.76 8.13 -51.93 -0.42 0.34 16 38 H 0.04 0.50 7.50 -51.93 -0.39 0.11 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.38 9.82 7.80 -40.82 -0.32 9.50 16 42 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.08 1.40 8.04 -51.93 -0.42 0.98 16 44 H 0.09 1.72 8.04 -51.93 -0.42 1.30 16 LS Contribution 382.75 15.07 5.77 5.77 Total: -1.00 -33.65 382.75 -6.07 -39.72 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -6.12 Total: 4.80 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -1.39 Total: 2.19 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: 0.31 Total: -57.29 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.30 Total: -8.73 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.08 Total: -3.76 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.65 -6.07 -39.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733526928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.686 kcal (2) G-P(sol) polarization free energy of solvation -33.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds