Wall clock time and date at job start Wed Apr 1 2020 01:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30014 * 127.33504 * 2 1 4 4 O 1.20647 * 112.30092 * 179.67832 * 3 2 1 5 5 C 1.33493 * 113.15976 * 0.50704 * 4 3 2 6 6 C 1.50703 * 126.83244 * 179.77628 * 5 4 3 7 7 F 1.39904 * 109.46969 * 239.68600 * 6 5 4 8 8 F 1.39901 * 109.47086 * 119.69004 * 6 5 4 9 9 C 1.37357 * 106.34028 * 359.51752 * 5 4 3 10 10 C 1.47395 * 128.56816 * 180.22648 * 9 5 4 11 11 O 1.21614 * 119.99803 * 89.99791 * 10 9 5 12 12 N 1.34771 * 120.00413 * 269.99716 * 10 9 5 13 13 C 1.47026 * 125.64660 * 359.69672 * 12 10 9 14 14 C 1.54317 * 107.27623 * 180.96597 * 13 12 10 15 15 C 1.55155 * 102.86535 * 22.52320 * 14 13 12 16 16 H 1.09000 * 111.00569 * 82.37486 * 15 14 13 17 17 C 1.52994 * 111.00266 * 206.22852 * 15 14 13 18 18 H 1.09008 * 109.47030 * 53.65257 * 17 15 14 19 19 C 1.52993 * 109.47402 * 293.64674 * 17 15 14 20 20 N 1.46506 * 109.46710 * 173.64605 * 17 15 14 21 21 C 1.36939 * 119.99805 * 204.99723 * 20 17 15 22 22 H 1.07997 * 120.00015 * 0.02562 * 21 20 17 23 23 C 1.38810 * 119.99862 * 180.02562 * 21 20 17 24 24 N 1.31618 * 120.00187 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00005 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47268 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47333 * 120.00400 * 25 23 21 28 28 H 1.48504 * 109.47577 * 240.00650 * 25 23 21 29 29 C 1.47421 * 125.65251 * 179.97438 * 12 10 9 30 30 H 1.08999 * 109.47345 * 270.02045 * 1 2 3 31 31 H 1.09001 * 109.47029 * 30.02779 * 1 2 3 32 32 H 1.09002 * 109.46559 * 150.02625 * 1 2 3 33 33 H 1.09002 * 109.47152 * 359.68671 * 6 5 4 34 34 H 1.09003 * 109.87422 * 300.50774 * 13 12 10 35 35 H 1.08996 * 109.88682 * 61.67053 * 13 12 10 36 36 H 1.09000 * 110.91991 * 264.10393 * 14 13 12 37 37 H 1.09005 * 110.58420 * 140.78388 * 14 13 12 38 38 H 1.09002 * 109.47065 * 60.00225 * 19 17 15 39 39 H 1.08997 * 109.47225 * 179.97438 * 19 17 15 40 40 H 1.08995 * 109.47177 * 300.00445 * 19 17 15 41 41 H 0.96998 * 119.99998 * 25.00488 * 20 17 15 42 42 H 0.97000 * 119.99817 * 179.97438 * 24 23 21 43 43 H 1.09001 * 110.36930 * 274.67697 * 29 12 10 44 44 H 1.08999 * 110.36614 * 37.00274 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4607 0.7208 0.0063 5 6 3.6494 -0.6007 0.0007 6 6 4.9713 -1.3245 0.0013 7 9 5.0638 -2.1272 -1.1409 8 9 5.0632 -2.1268 1.1437 9 6 2.3992 -1.1696 0.0005 10 6 2.0401 -2.5992 -0.0001 11 8 1.8920 -3.1893 1.0530 12 7 1.8760 -3.2524 -1.1674 13 6 2.0175 -2.6624 -2.5067 14 6 1.7150 -3.7753 -3.5320 15 6 0.8608 -4.7778 -2.7118 16 1 -0.1827 -4.4646 -2.6766 17 6 0.9871 -6.1948 -3.2748 18 1 2.0406 -6.4672 -3.3400 19 6 0.3593 -6.2475 -4.6690 20 7 0.2934 -7.1350 -2.3909 21 6 0.6658 -8.4525 -2.3653 22 1 1.4711 -8.7984 -2.9963 23 6 0.0082 -9.3434 -1.5282 24 7 -0.9736 -8.9220 -0.7595 25 14 0.5166 -11.1405 -1.4928 26 1 1.6376 -11.3567 -2.4424 27 1 0.9535 -11.5044 -0.1209 28 1 -0.6367 -11.9892 -1.8864 29 6 1.5191 -4.6753 -1.3130 30 1 -0.3634 0.0004 1.0276 31 1 -0.3633 0.8897 -0.5143 32 1 -0.3632 -0.8903 -0.5135 33 1 5.7835 -0.5977 0.0013 34 1 1.3096 -1.8424 -2.6271 35 1 3.0357 -2.2994 -2.6461 36 1 2.6351 -4.2459 -3.8785 37 1 1.1438 -3.3783 -4.3712 38 1 0.8754 -5.5480 -5.3265 39 1 0.4497 -7.2569 -5.0702 40 1 -0.6940 -5.9750 -4.6037 41 1 -0.4297 -6.8242 -1.8239 42 1 -1.4333 -9.5447 -0.1749 43 1 2.4131 -5.2972 -1.2679 44 1 0.8114 -4.9701 -0.5382 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733526928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:26 Heat of formation + Delta-G solvation = -78.350157 kcal Electronic energy + Delta-G solvation = -31132.786051 eV Core-core repulsion = 26530.935181 eV Total energy + Delta-G solvation = -4601.850871 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.30350 -48.33229 -46.27219 -41.27335 -39.18550 -36.83946 -35.91556 -34.44718 -34.07944 -32.07326 -30.13755 -30.05711 -29.72940 -28.15170 -26.21001 -25.78626 -24.01552 -22.91643 -22.07727 -21.09494 -20.89459 -19.47577 -19.31250 -18.98969 -18.53924 -18.37085 -18.18722 -17.55769 -16.99229 -16.59356 -16.40929 -15.58097 -15.44114 -15.20534 -15.11265 -14.77021 -14.69005 -14.57883 -14.46043 -14.37053 -14.17624 -14.00267 -13.77287 -13.63547 -13.40837 -13.11667 -12.91275 -12.75713 -12.73127 -12.47401 -12.37267 -12.14867 -12.05811 -11.79841 -11.60717 -11.52410 -11.34821 -11.18474 -11.13165 -10.93640 -9.88355 -8.97277 -7.91455 -5.18572 -0.31387 0.54500 0.95606 1.08061 1.46866 1.48064 1.57134 1.70656 2.57442 2.65478 2.75027 2.86958 3.13285 3.39317 3.41932 3.45981 3.59241 3.61480 3.71875 3.84196 3.91967 4.16688 4.22116 4.25354 4.37819 4.46543 4.51924 4.58355 4.63287 4.64660 4.83331 4.86736 4.94546 4.95947 5.03268 5.10914 5.17706 5.29923 5.41763 5.55810 5.66763 6.22775 6.31115 6.74193 6.78100 7.37236 8.14939 8.35618 9.32329 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.014932 B = 0.002966 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.779597 B = 9436.781614 C = 9741.014462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.057 3.943 3 N -0.344 5.344 4 O 0.140 5.860 5 C -0.067 4.067 6 C 0.354 3.646 7 F -0.185 7.185 8 F -0.195 7.195 9 C -0.206 4.206 10 C 0.599 3.401 11 O -0.567 6.567 12 N -0.598 5.598 13 C 0.096 3.904 14 C -0.109 4.109 15 C -0.090 4.090 16 H 0.082 0.918 17 C 0.179 3.821 18 H 0.047 0.953 19 C -0.152 4.152 20 N -0.738 5.738 21 C -0.229 4.229 22 H 0.077 0.923 23 C -0.078 4.078 24 N -0.971 5.971 25 Si 0.965 3.035 26 H -0.264 1.264 27 H -0.300 1.300 28 H -0.295 1.295 29 C 0.125 3.875 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.208 0.792 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.033 0.967 40 H 0.042 0.958 41 H 0.370 0.630 42 H 0.248 0.752 43 H 0.057 0.943 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.990 24.716 -6.120 27.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.104 4.104 3 N -0.046 5.046 4 O 0.072 5.928 5 C -0.132 4.132 6 C 0.300 3.700 7 F -0.166 7.166 8 F -0.176 7.176 9 C -0.213 4.213 10 C 0.386 3.614 11 O -0.447 6.447 12 N -0.329 5.329 13 C -0.025 4.025 14 C -0.147 4.147 15 C -0.110 4.110 16 H 0.101 0.899 17 C 0.070 3.930 18 H 0.065 0.935 19 C -0.212 4.212 20 N -0.378 5.378 21 C -0.361 4.361 22 H 0.095 0.905 23 C -0.270 4.270 24 N -0.622 5.622 25 Si 0.795 3.205 26 H -0.188 1.188 27 H -0.228 1.228 28 H -0.222 1.222 29 C 0.003 3.997 30 H 0.112 0.888 31 H 0.128 0.872 32 H 0.104 0.896 33 H 0.225 0.775 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.134 0.866 38 H 0.100 0.900 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.202 0.798 42 H 0.056 0.944 43 H 0.076 0.924 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.835 25.565 -5.582 28.322 hybrid contribution -0.602 -2.375 0.966 2.634 sum 10.233 23.190 -4.616 25.764 Atomic orbital electron populations 1.20429 0.82937 1.05537 1.05010 1.25147 0.99922 0.84987 1.00370 1.73595 0.89159 1.22799 1.19012 1.84547 1.21375 1.20180 1.66653 1.25290 0.97336 0.85671 1.04925 1.20039 0.92884 0.85695 0.71429 1.93084 1.96534 1.76212 1.50730 1.93111 1.96582 1.76451 1.51476 1.22020 0.94048 0.94760 1.10494 1.16775 0.77407 0.84481 0.82778 1.90872 1.52616 1.68832 1.32363 1.48507 1.66599 1.11549 1.06261 1.22393 1.02927 0.97446 0.79782 1.22710 1.01003 0.93788 0.97194 1.22507 0.99859 0.96043 0.92604 0.89943 1.20426 0.95357 0.87069 0.90107 0.93508 1.22262 1.00594 1.00887 0.97458 1.42658 1.41127 1.05490 1.48499 1.19629 1.12684 0.86296 1.17510 0.90523 1.25479 0.99437 1.01999 1.00089 1.69821 1.27011 1.34968 1.30401 0.85182 0.77411 0.80982 0.76901 1.18809 1.22757 1.22243 1.22102 0.98939 0.79998 0.98669 0.88834 0.87205 0.89645 0.77526 0.89538 0.89752 0.89140 0.86563 0.90029 0.94782 0.93885 0.79818 0.94356 0.92433 0.93544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.31 10.49 71.24 0.75 -0.57 16 2 C 0.06 1.19 7.59 45.16 0.34 1.53 16 3 N -0.34 -6.89 12.01 -44.79 -0.54 -7.43 16 4 O 0.14 2.41 11.06 77.00 0.85 3.26 16 5 C -0.07 -1.27 6.98 25.48 0.18 -1.09 16 6 C 0.35 5.25 5.68 71.24 0.40 5.65 16 7 F -0.18 -3.34 16.75 44.97 0.75 -2.58 16 8 F -0.20 -4.51 17.32 44.97 0.78 -3.73 16 9 C -0.21 -5.10 5.42 -18.75 -0.10 -5.20 16 10 C 0.60 19.44 7.66 86.66 0.66 20.10 16 11 O -0.57 -24.29 17.36 -4.08 -0.07 -24.36 16 12 N -0.60 -17.27 3.33 -815.66 -2.71 -19.98 16 13 C 0.10 1.84 6.46 86.73 0.56 2.40 16 14 C -0.11 -2.01 5.59 31.78 0.18 -1.83 16 15 C -0.09 -2.58 2.62 -9.40 -0.02 -2.61 16 16 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 17 C 0.18 6.33 2.40 44.99 0.11 6.44 16 18 H 0.05 1.70 8.05 -2.38 -0.02 1.68 16 19 C -0.15 -4.66 9.34 71.98 0.67 -3.98 16 20 N -0.74 -35.86 4.82 -322.94 -1.56 -37.41 16 21 C -0.23 -12.51 9.93 84.03 0.83 -11.68 16 22 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 23 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 24 N -0.97 -60.39 13.06 21.65 0.28 -60.11 16 25 Si 0.97 46.83 29.55 68.60 2.03 48.86 16 26 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 27 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 28 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 29 C 0.13 4.36 6.09 86.86 0.53 4.89 16 30 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.21 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.08 1.42 7.56 -2.39 -0.02 1.40 16 36 H 0.09 1.57 8.01 -2.39 -0.02 1.55 16 37 H 0.12 1.47 8.13 -2.38 -0.02 1.45 16 38 H 0.08 1.79 7.50 -2.39 -0.02 1.77 16 39 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.37 19.78 7.80 -92.71 -0.72 19.06 16 42 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 43 H 0.06 2.19 8.04 -2.39 -0.02 2.18 16 44 H 0.05 1.98 8.04 -2.39 -0.02 1.96 16 Total: -1.00 -78.03 382.75 5.69 -72.34 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.32 Total: 21.12 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 5.56 Total: 10.02 kcal Atomic # 7 Polarization: -120.40 SS G_CDS: -4.52 Total: -124.93 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: 0.78 Total: -21.10 kcal Atomic # 9 Polarization: -7.84 SS G_CDS: 1.53 Total: -6.31 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -78.03 5.69 -72.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733526928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.010 kcal (2) G-P(sol) polarization free energy of solvation -78.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds