Wall clock time and date at job start Wed Apr 1 2020 02:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 5 5 C 1.46894 * 111.00220 * 274.99988 * 4 2 1 6 6 H 1.09003 * 109.46882 * 35.00199 * 5 4 2 7 7 C 1.52996 * 109.47341 * 275.00061 * 5 4 2 8 8 O 1.42907 * 109.47138 * 295.00091 * 7 5 4 9 9 C 1.53001 * 109.47085 * 154.99940 * 5 4 2 10 10 N 1.46494 * 109.47276 * 305.00028 * 9 5 4 11 11 C 1.34778 * 120.00346 * 180.02562 * 10 9 5 12 12 O 1.21282 * 119.99532 * 359.97438 * 11 10 9 13 13 C 1.50699 * 120.00237 * 180.02562 * 11 10 9 14 14 S 1.81006 * 109.46947 * 179.97438 * 13 11 10 15 15 C 1.76199 * 99.99662 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00510 * 0.02562 * 15 14 13 17 17 C 1.38801 * 119.99867 * 179.97438 * 15 14 13 18 18 N 1.31628 * 120.00238 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99837 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47117 * 89.99870 * 19 17 15 21 21 H 1.48506 * 109.47150 * 209.99911 * 19 17 15 22 22 H 1.48500 * 109.47288 * 329.99713 * 19 17 15 23 23 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 24 24 N 1.30522 * 126.34776 * 285.02652 * 23 2 1 25 25 N 1.28595 * 109.67677 * 179.97438 * 24 23 2 26 26 C 1.30517 * 109.67162 * 359.97438 * 25 24 23 27 27 N 1.35492 * 126.34664 * 104.70785 * 23 2 1 28 28 C 1.46498 * 126.98230 * 0.04431 * 27 23 2 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 31 31 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 32 32 H 1.00900 * 110.99934 * 38.95495 * 4 2 1 33 33 H 1.09002 * 109.46907 * 54.99763 * 7 5 4 34 34 H 1.09000 * 109.47463 * 175.00132 * 7 5 4 35 35 H 0.96698 * 113.99706 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47198 * 65.00349 * 9 5 4 37 37 H 1.09006 * 109.46885 * 185.00359 * 9 5 4 38 38 H 0.97006 * 119.99813 * 359.97438 * 10 9 5 39 39 H 1.08993 * 109.47032 * 299.99324 * 13 11 10 40 40 H 1.08998 * 109.47411 * 59.99786 * 13 11 10 41 41 H 0.96999 * 120.00161 * 179.97438 * 18 17 15 42 42 H 1.08003 * 126.34973 * 180.02562 * 26 25 24 43 43 H 1.08999 * 109.47126 * 89.99110 * 28 27 23 44 44 H 1.08998 * 109.47214 * 209.99845 * 28 27 23 45 45 H 1.09006 * 109.46912 * 329.99471 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2225 2.3468 6 1 1.2576 0.9328 2.2907 7 6 3.4111 0.9808 2.3224 8 8 4.4881 0.0611 2.5129 9 6 1.9771 -0.5798 3.6453 10 7 0.7623 -1.3981 3.6165 11 6 0.4601 -2.1928 4.6623 12 8 1.1941 -2.2309 5.6270 13 6 -0.7893 -3.0349 4.6324 14 16 -0.9140 -3.9840 6.1686 15 6 -2.4191 -4.8507 5.8714 16 1 -2.9556 -4.6998 4.9463 17 6 -2.9147 -5.7282 6.8258 18 7 -4.0388 -6.3760 6.6036 19 14 -1.9865 -5.9898 8.4256 20 1 -2.4601 -5.0123 9.4382 21 1 -2.2285 -7.3696 8.9184 22 1 -0.5329 -5.7954 8.1920 23 6 2.0323 -0.7104 -1.2305 24 7 2.0332 -1.9997 -1.4332 25 7 2.5335 -2.2559 -2.5898 26 6 2.8740 -1.1415 -3.1778 27 7 2.5612 -0.1286 -2.3339 28 6 2.7579 1.3045 -2.5662 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3635 0.5138 -0.8899 32 1 1.4496 -1.4979 1.4100 33 1 3.5262 1.4810 1.3607 34 1 3.4210 1.7224 3.1212 35 1 5.3628 0.4734 2.5082 36 1 2.8487 -1.2268 3.7445 37 1 1.9342 0.1045 4.4928 38 1 0.1750 -1.3673 2.8451 39 1 -1.6610 -2.3883 4.5327 40 1 -0.7459 -3.7195 3.7853 41 1 -4.3850 -6.9895 7.2705 42 1 3.3189 -1.0445 -4.1571 43 1 3.7438 1.5989 -2.2066 44 1 2.6830 1.5132 -3.6334 45 1 1.9930 1.8676 -2.0313 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734361917.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:52 Heat of formation + Delta-G solvation = 5.574235 kcal Electronic energy + Delta-G solvation = -27559.863656 eV Core-core repulsion = 23547.785158 eV Total energy + Delta-G solvation = -4012.078498 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.38541 -39.70707 -38.37393 -36.46260 -35.42767 -34.61339 -32.40000 -32.22491 -30.13131 -29.37683 -28.21812 -28.10779 -25.78434 -25.42790 -24.25164 -22.67537 -21.01818 -20.68353 -20.41533 -18.11082 -17.84425 -17.57539 -16.76369 -16.71672 -16.39539 -15.91495 -15.36887 -15.27084 -15.04961 -14.89772 -14.77178 -14.31604 -14.01835 -13.92016 -13.64364 -13.57222 -13.48617 -13.24267 -12.89853 -12.75098 -12.41611 -12.20822 -12.02243 -11.75424 -11.63846 -11.39906 -11.21907 -10.96992 -10.56375 -10.54975 -10.53640 -10.29255 -9.81788 -9.51232 -9.50455 -9.00027 -8.94239 -8.88660 -8.45594 -6.87050 -6.24703 -3.96063 1.47776 2.04459 2.67701 2.78609 3.00852 3.30323 3.36743 3.52887 3.55047 3.68988 3.86445 3.91427 4.03449 4.20659 4.33866 4.37298 4.39903 4.45919 4.50905 4.69739 4.71661 4.78730 4.94259 4.95469 5.04788 5.08534 5.14344 5.15749 5.22466 5.33219 5.45116 5.57557 5.64013 5.80617 5.86990 5.96202 6.05759 6.41304 6.47273 6.56051 6.91433 7.38922 7.55402 7.98400 8.46131 8.50442 8.52521 9.21548 10.84556 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.015482 B = 0.002324 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.085044 B =12042.856738 C =13148.903507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.173 3.827 3 H 0.092 0.908 4 N -0.661 5.661 5 C 0.078 3.922 6 H 0.067 0.933 7 C 0.092 3.908 8 O -0.551 6.551 9 C 0.123 3.877 10 N -0.741 5.741 11 C 0.533 3.467 12 O -0.515 6.515 13 C -0.125 4.125 14 S -0.141 6.141 15 C -0.520 4.520 16 H 0.088 0.912 17 C 0.095 3.905 18 N -0.881 5.881 19 Si 0.857 3.143 20 H -0.268 1.268 21 H -0.274 1.274 22 H -0.235 1.235 23 C 0.191 3.809 24 N -0.273 5.273 25 N -0.295 5.295 26 C 0.143 3.857 27 N -0.479 5.479 28 C 0.072 3.928 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.360 0.640 33 H 0.042 0.958 34 H 0.051 0.949 35 H 0.374 0.626 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.393 0.607 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.270 0.730 42 H 0.217 0.783 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.044 24.747 -20.806 35.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.060 3.940 3 H 0.110 0.890 4 N -0.297 5.297 5 C -0.032 4.032 6 H 0.085 0.915 7 C 0.013 3.987 8 O -0.355 6.355 9 C -0.001 4.001 10 N -0.397 5.397 11 C 0.319 3.681 12 O -0.389 6.389 13 C -0.276 4.276 14 S 0.086 5.914 15 C -0.668 4.668 16 H 0.106 0.894 17 C -0.114 4.114 18 N -0.517 5.517 19 Si 0.682 3.318 20 H -0.193 1.193 21 H -0.200 1.200 22 H -0.159 1.159 23 C -0.077 4.077 24 N -0.113 5.113 25 N -0.134 5.134 26 C -0.144 4.144 27 N -0.171 5.171 28 C -0.072 4.072 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.183 0.817 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.220 0.780 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.227 0.773 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.080 0.920 42 H 0.233 0.767 43 H 0.101 0.899 44 H 0.112 0.888 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 16.103 22.707 -19.015 33.712 hybrid contribution -1.197 1.834 -1.177 2.487 sum 14.906 24.541 -20.193 35.103 Atomic orbital electron populations 1.22565 0.94528 1.04308 1.03060 1.19719 0.93227 0.95666 0.85394 0.89047 1.60189 1.58482 1.09251 1.01765 1.21910 0.96332 0.94635 0.90303 0.91548 1.22070 0.87029 0.90735 0.98893 1.86652 1.16612 1.36379 1.95903 1.21376 0.88687 0.94638 0.95410 1.46007 1.26239 1.46383 1.21072 1.20243 0.86828 0.79067 0.81936 1.90708 1.50698 1.64638 1.32841 1.23287 0.97453 1.01355 1.05464 1.84788 1.33674 1.52851 1.20129 1.22321 1.06867 1.29182 1.08427 0.89379 1.24715 0.94359 0.94011 0.98269 1.69939 1.19432 1.26793 1.35583 0.86733 0.83053 0.78378 0.83683 1.19268 1.19963 1.15860 1.24619 1.01125 0.91115 0.90833 1.74282 1.17078 1.10642 1.09303 1.74322 1.13966 1.22930 1.02139 1.26437 1.04782 0.83615 0.99542 1.46161 1.46909 1.09179 1.14825 1.22097 1.03755 0.77009 1.04296 0.90527 0.90985 0.91612 0.81688 0.93981 0.93086 0.78011 0.89202 0.90888 0.77286 0.88593 0.88282 0.91973 0.76677 0.89947 0.88830 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.12 9.13 37.16 0.34 -0.78 16 2 C 0.17 1.21 2.69 -68.87 -0.19 1.02 16 3 H 0.09 0.41 6.20 -51.93 -0.32 0.09 16 4 N -0.66 -6.02 5.98 -100.96 -0.60 -6.62 16 5 C 0.08 0.60 2.41 -67.72 -0.16 0.44 16 6 H 0.07 0.37 7.11 -51.93 -0.37 0.00 16 7 C 0.09 0.59 6.78 37.16 0.25 0.85 16 8 O -0.55 -4.87 12.64 -35.23 -0.45 -5.32 16 9 C 0.12 1.40 5.20 -4.04 -0.02 1.37 16 10 N -0.74 -9.43 4.99 -60.29 -0.30 -9.73 16 11 C 0.53 9.62 7.85 -10.99 -0.09 9.54 16 12 O -0.51 -11.34 15.86 5.56 0.09 -11.25 16 13 C -0.12 -2.46 6.16 36.01 0.22 -2.24 16 14 S -0.14 -3.63 18.55 -107.50 -1.99 -5.63 16 15 C -0.52 -15.22 10.04 30.94 0.31 -14.91 16 16 H 0.09 2.68 8.03 -52.49 -0.42 2.26 16 17 C 0.09 2.82 5.50 -17.43 -0.10 2.73 16 18 N -0.88 -26.96 13.97 55.49 0.78 -26.18 16 19 Si 0.86 22.15 27.74 -169.99 -4.71 17.44 16 20 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.23 -6.08 6.74 56.52 0.38 -5.70 16 23 C 0.19 1.85 6.87 -154.99 -1.07 0.79 16 24 N -0.27 -3.77 12.21 32.80 0.40 -3.37 16 25 N -0.29 -3.88 12.21 29.69 0.36 -3.52 16 26 C 0.14 1.18 12.74 -89.94 -1.15 0.03 16 27 N -0.48 -3.26 3.15 -122.69 -0.39 -3.64 16 28 C 0.07 0.12 10.84 59.85 0.65 0.76 16 29 H 0.08 0.60 8.13 -51.93 -0.42 0.18 16 30 H 0.07 0.34 7.43 -51.93 -0.39 -0.05 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.36 3.81 6.45 -39.29 -0.25 3.56 16 33 H 0.04 0.21 7.38 -51.93 -0.38 -0.18 16 34 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.37 1.69 9.12 45.56 0.42 2.10 16 36 H 0.09 1.28 7.39 -51.93 -0.38 0.90 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.39 3.93 7.37 -40.82 -0.30 3.63 16 39 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 40 H 0.10 1.84 8.14 -51.92 -0.42 1.42 16 41 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 42 H 0.22 0.76 8.06 -52.48 -0.42 0.34 16 43 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 44 H 0.09 -0.04 8.14 -51.93 -0.42 -0.46 16 45 H 0.09 0.03 7.47 -51.93 -0.39 -0.36 16 LS Contribution 389.88 15.07 5.88 5.88 Total: -1.00 -41.31 389.88 -7.68 -49.00 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -5.75 Total: 3.36 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -0.99 Total: -0.40 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.25 Total: -53.07 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.36 Total: -16.57 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.71 Total: 17.44 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -41.31 -7.68 -49.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734361917.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.570 kcal (2) G-P(sol) polarization free energy of solvation -41.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds