Wall clock time and date at job start Wed Apr 1 2020 01:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30214 * 126.78602 * 2 1 4 4 O 1.20919 * 111.64525 * 179.97438 * 3 2 1 5 5 C 1.34069 * 111.55154 * 0.02562 * 4 3 2 6 6 Cl 1.73599 * 126.79970 * 179.97438 * 5 4 3 7 7 C 1.35683 * 106.40528 * 359.97438 * 5 4 3 8 8 C 1.50693 * 128.01158 * 179.97438 * 7 5 4 9 9 C 1.50705 * 109.47030 * 90.02702 * 8 7 5 10 10 O 1.21283 * 120.00153 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00200 * 179.97438 * 9 8 7 12 12 C 1.46494 * 119.99823 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.46936 * 179.97438 * 12 11 9 14 14 C 1.53008 * 109.47322 * 180.02562 * 13 12 11 15 15 N 1.46494 * 109.47055 * 180.02562 * 14 13 12 16 16 C 1.36941 * 120.00081 * 90.00443 * 15 14 13 17 17 H 1.07998 * 119.99844 * 217.14872 * 16 15 14 18 18 C 1.38807 * 120.00091 * 37.13689 * 16 15 14 19 19 N 1.31623 * 120.00080 * 21.27233 * 18 16 15 20 20 Si 1.86798 * 120.00119 * 201.26498 * 18 16 15 21 21 H 1.48501 * 109.46755 * 60.00721 * 20 18 16 22 22 H 1.48501 * 109.47145 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47465 * 300.00712 * 20 18 16 24 24 C 1.46500 * 120.00098 * 269.99740 * 15 14 13 25 25 C 1.52993 * 109.47185 * 114.90552 * 24 15 14 26 26 C 1.53003 * 109.47062 * 234.90690 * 24 15 14 27 27 H 1.08993 * 109.47158 * 90.02465 * 1 2 3 28 28 H 1.08998 * 109.47073 * 210.02727 * 1 2 3 29 29 H 1.09005 * 109.46753 * 330.02507 * 1 2 3 30 30 H 1.08998 * 109.47264 * 210.02346 * 8 7 5 31 31 H 1.08994 * 109.47893 * 330.02909 * 8 7 5 32 32 H 0.97000 * 119.99740 * 0.02562 * 11 9 8 33 33 H 1.09001 * 109.47636 * 299.99631 * 12 11 9 34 34 H 1.09000 * 109.47431 * 60.00336 * 12 11 9 35 35 H 1.08998 * 109.47338 * 299.99922 * 13 12 11 36 36 H 1.08994 * 109.47536 * 60.00311 * 13 12 11 37 37 H 1.08998 * 109.46773 * 300.00173 * 14 13 12 38 38 H 1.09003 * 109.46628 * 59.99921 * 14 13 12 39 39 H 0.97001 * 120.00083 * 179.97438 * 19 18 16 40 40 H 1.09000 * 109.47297 * 354.90253 * 24 15 14 41 41 H 1.09003 * 109.47454 * 63.31055 * 25 24 15 42 42 H 1.09005 * 109.47463 * 183.31151 * 25 24 15 43 43 H 1.09004 * 109.47302 * 303.31286 * 25 24 15 44 44 H 1.09004 * 109.47270 * 61.62255 * 26 24 15 45 45 H 1.08999 * 109.46994 * 181.61718 * 26 24 15 46 46 H 1.09001 * 109.47206 * 301.61858 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2868 1.0429 0.0000 4 8 3.4540 0.7270 0.0005 5 6 3.6037 -0.6053 0.0004 6 17 5.1012 -1.4835 0.0003 7 6 2.3531 -1.1314 0.0003 8 6 1.9581 -2.5857 -0.0005 9 6 1.8260 -3.0710 1.4202 10 8 2.0327 -2.3109 2.3424 11 7 1.4781 -4.3497 1.6659 12 6 1.3502 -4.8215 3.0469 13 6 0.9478 -6.2977 3.0462 14 6 0.8137 -6.7904 4.4886 15 7 0.4290 -8.2039 4.4879 16 6 1.3935 -9.1761 4.4877 17 1 1.2447 -10.0842 3.9225 18 6 2.5624 -8.9941 5.2138 19 7 2.5919 -8.1327 6.2086 20 14 4.0936 -9.9719 4.7793 21 1 4.4906 -9.6737 3.3798 22 1 5.1980 -9.5964 5.6983 23 1 3.8093 -11.4230 4.9147 24 6 -0.9876 -8.5776 4.4875 25 6 -1.3256 -9.2944 3.1789 26 6 -1.2694 -9.5101 5.6674 27 1 -0.3633 -0.0004 -1.0276 28 1 -0.3633 -0.8897 0.5142 29 1 -0.3633 0.8903 0.5135 30 1 1.0041 -2.7028 -0.5146 31 1 2.7218 -3.1695 -0.5142 32 1 1.3131 -4.9577 0.9283 33 1 2.3045 -4.7050 3.5606 34 1 0.5870 -4.2376 3.5612 35 1 -0.0066 -6.4139 2.5328 36 1 1.7107 -6.8820 2.5319 37 1 1.7678 -6.6741 5.0024 38 1 0.0505 -6.2060 5.0026 39 1 3.4087 -8.0058 6.7163 40 1 -1.6000 -7.6806 4.5792 41 1 -0.7562 -10.2217 3.1149 42 1 -2.3917 -9.5202 3.1531 43 1 -1.0698 -8.6521 2.3361 44 1 -1.0559 -8.9895 6.6010 45 1 -2.3169 -9.8110 5.6505 46 1 -0.6361 -10.3940 5.5912 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753293711.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:10 Heat of formation + Delta-G solvation = 27.687850 kcal Electronic energy + Delta-G solvation = -27533.121772 eV Core-core repulsion = 23487.665734 eV Total energy + Delta-G solvation = -4045.456037 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.145 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -45.31141 -39.65901 -37.49384 -36.83403 -35.70482 -34.94072 -32.79047 -32.48707 -31.56235 -29.58801 -29.02345 -28.30894 -26.20516 -25.27522 -23.40023 -22.28074 -21.75255 -20.93970 -20.18088 -19.52738 -18.16064 -18.00726 -16.87506 -16.44629 -16.04864 -15.64384 -15.32454 -14.89115 -14.39705 -14.17301 -13.85117 -13.72932 -13.50910 -13.45178 -13.35416 -12.98828 -12.87208 -12.68699 -12.51950 -12.39690 -12.14484 -11.71058 -11.51776 -11.44053 -11.32082 -11.18336 -10.98165 -10.76966 -10.67041 -10.46485 -10.34302 -10.22164 -9.98105 -9.86791 -9.60424 -9.55281 -9.40714 -8.90402 -8.47905 -6.56439 -5.78446 -3.36296 0.77447 0.95978 1.76052 2.62846 3.20077 3.34383 3.40130 3.41866 3.42677 3.73329 4.20888 4.46273 4.50617 4.53900 4.85313 5.04348 5.15701 5.21349 5.22603 5.31584 5.35478 5.36230 5.63665 5.73709 5.78457 5.92509 6.01123 6.15754 6.29053 6.37941 6.38561 6.42673 6.65398 6.70888 6.72183 6.77261 6.78538 7.09842 7.19755 7.32705 7.57072 7.67753 7.78893 7.83199 8.25404 8.52776 9.19826 9.82717 10.41182 11.21393 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013907 B = 0.002425 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.822153 B =11544.295956 C =12913.247463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.044 3.956 3 N -0.348 5.348 4 O 0.109 5.891 5 C 0.014 3.986 6 Cl 0.050 6.950 7 C -0.149 4.149 8 C -0.069 4.069 9 C 0.509 3.491 10 O -0.533 6.533 11 N -0.723 5.723 12 C 0.121 3.879 13 C -0.145 4.145 14 C 0.150 3.850 15 N -0.579 5.579 16 C -0.253 4.253 17 H 0.059 0.941 18 C 0.012 3.988 19 N -0.886 5.886 20 Si 0.893 3.107 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.162 3.838 25 C -0.154 4.154 26 C -0.146 4.146 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.400 0.600 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.065 0.935 37 H 0.097 0.903 38 H 0.024 0.976 39 H 0.255 0.745 40 H 0.044 0.956 41 H 0.051 0.949 42 H 0.034 0.966 43 H 0.043 0.957 44 H 0.047 0.953 45 H 0.029 0.971 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.001 12.008 -15.642 19.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.114 4.114 3 N -0.055 5.055 4 O 0.043 5.957 5 C -0.077 4.077 6 Cl 0.079 6.921 7 C -0.154 4.154 8 C -0.110 4.110 9 C 0.294 3.706 10 O -0.410 6.410 11 N -0.375 5.375 12 C -0.002 4.002 13 C -0.186 4.186 14 C 0.023 3.977 15 N -0.299 5.299 16 C -0.383 4.383 17 H 0.077 0.923 18 C -0.188 4.188 19 N -0.528 5.528 20 Si 0.723 3.277 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.208 1.208 24 C 0.055 3.945 25 C -0.213 4.213 26 C -0.204 4.204 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.233 0.767 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.042 0.958 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.048 0.952 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.801 13.820 -14.792 20.436 hybrid contribution 1.076 -1.723 -0.534 2.101 sum -1.724 12.097 -15.326 19.601 Atomic orbital electron populations 1.20230 0.85206 1.04535 1.03508 1.23243 0.99087 0.87701 1.01405 1.73916 0.88486 1.22882 1.20232 1.84902 1.22139 1.20547 1.68106 1.24504 0.90962 0.84971 1.07219 1.98466 1.28165 1.68875 1.96627 1.20091 0.90092 0.96820 1.08416 1.20008 1.04989 0.89669 0.96320 1.20303 0.77357 0.82414 0.90555 1.90742 1.49321 1.54938 1.45990 1.46147 1.70115 1.11021 1.10188 1.21489 1.01715 0.96051 0.80954 1.22499 1.00526 0.91940 1.03589 1.20813 1.02127 0.83850 0.90887 1.43851 0.99577 1.01336 1.85142 1.18848 0.96447 0.99838 1.23132 0.92347 1.25152 1.00010 0.98720 0.94925 1.69971 1.26977 1.37882 1.18015 0.86533 0.83299 0.80022 0.77881 1.21025 1.21681 1.20835 1.20411 0.86738 0.94965 0.92390 1.22205 0.98494 1.01227 0.99380 1.22039 0.97926 1.01028 0.99448 0.89719 0.89672 0.89999 0.86858 0.87156 0.76661 0.91488 0.92008 0.93258 0.91650 0.88560 0.95792 0.93533 0.93759 0.92977 0.94647 0.93793 0.93340 0.95221 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.39 36.01 0.37 -0.23 16 2 C 0.04 0.50 7.32 -82.12 -0.60 -0.10 16 3 N -0.35 -4.47 12.07 33.44 0.40 -4.06 16 4 O 0.11 1.37 11.20 17.10 0.19 1.56 16 5 C 0.01 0.16 8.12 29.82 0.24 0.40 16 6 Cl 0.05 0.51 29.23 -51.86 -1.52 -1.01 16 7 C -0.15 -1.64 4.82 -104.39 -0.50 -2.15 16 8 C -0.07 -0.61 6.10 -29.04 -0.18 -0.79 16 9 C 0.51 6.56 7.82 -10.98 -0.09 6.48 16 10 O -0.53 -9.30 16.03 5.56 0.09 -9.21 16 11 N -0.72 -8.89 5.56 -60.29 -0.33 -9.22 16 12 C 0.12 1.89 5.67 -4.05 -0.02 1.87 16 13 C -0.15 -2.49 5.65 -26.73 -0.15 -2.65 16 14 C 0.15 3.24 5.28 -4.04 -0.02 3.22 16 15 N -0.58 -13.27 2.37 -165.67 -0.39 -13.67 16 16 C -0.25 -6.43 8.04 -15.06 -0.12 -6.55 16 17 H 0.06 1.50 7.14 -52.49 -0.37 1.13 16 18 C 0.01 0.32 4.96 -17.43 -0.09 0.24 16 19 N -0.89 -24.53 11.43 55.49 0.63 -23.90 16 20 Si 0.89 20.87 29.60 -169.99 -5.03 15.84 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.16 3.22 3.37 -67.93 -0.23 2.99 16 25 C -0.15 -2.68 9.19 37.15 0.34 -2.34 16 26 C -0.15 -2.87 9.11 37.16 0.34 -2.53 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.40 3.75 8.47 -40.82 -0.35 3.40 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.10 2.41 5.48 -51.93 -0.28 2.12 16 38 H 0.02 0.50 7.88 -51.93 -0.41 0.09 16 39 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 40 H 0.04 0.84 7.77 -51.93 -0.40 0.43 16 41 H 0.05 0.97 7.32 -51.93 -0.38 0.59 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.06 1.24 7.50 -51.93 -0.39 0.85 16 LS Contribution 400.38 15.07 6.03 6.03 Total: -1.00 -31.00 400.38 -7.84 -38.84 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -7.22 Total: 0.94 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -0.70 Total: -2.16 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: 0.31 Total: -50.85 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.28 Total: -7.65 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Atomic # 17 Polarization: 0.51 SS G_CDS: -1.52 Total: -1.01 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.00 -7.84 -38.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753293711.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.530 kcal (2) G-P(sol) polarization free energy of solvation -30.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds