Wall clock time and date at job start Wed Apr 1 2020 01:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30214 * 126.78602 * 2 1 4 4 O 1.20919 * 111.64525 * 179.97438 * 3 2 1 5 5 C 1.34069 * 111.55154 * 0.02562 * 4 3 2 6 6 Cl 1.73599 * 126.79970 * 179.97438 * 5 4 3 7 7 C 1.35683 * 106.40528 * 359.97438 * 5 4 3 8 8 C 1.50693 * 128.01158 * 179.97438 * 7 5 4 9 9 C 1.50705 * 109.47030 * 90.02702 * 8 7 5 10 10 O 1.21283 * 120.00153 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00200 * 179.97438 * 9 8 7 12 12 C 1.46494 * 119.99823 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.46936 * 179.97438 * 12 11 9 14 14 C 1.53008 * 109.47322 * 180.02562 * 13 12 11 15 15 N 1.46494 * 109.47055 * 180.02562 * 14 13 12 16 16 C 1.36941 * 120.00081 * 90.00443 * 15 14 13 17 17 H 1.07998 * 119.99844 * 217.14872 * 16 15 14 18 18 C 1.38807 * 120.00091 * 37.13689 * 16 15 14 19 19 N 1.31623 * 120.00080 * 21.27233 * 18 16 15 20 20 Si 1.86798 * 120.00119 * 201.26498 * 18 16 15 21 21 H 1.48501 * 109.46755 * 60.00721 * 20 18 16 22 22 H 1.48501 * 109.47145 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47465 * 300.00712 * 20 18 16 24 24 C 1.46500 * 120.00098 * 269.99740 * 15 14 13 25 25 C 1.52993 * 109.47185 * 114.90552 * 24 15 14 26 26 C 1.53003 * 109.47062 * 234.90690 * 24 15 14 27 27 H 1.08993 * 109.47158 * 90.02465 * 1 2 3 28 28 H 1.08998 * 109.47073 * 210.02727 * 1 2 3 29 29 H 1.09005 * 109.46753 * 330.02507 * 1 2 3 30 30 H 1.08998 * 109.47264 * 210.02346 * 8 7 5 31 31 H 1.08994 * 109.47893 * 330.02909 * 8 7 5 32 32 H 0.97000 * 119.99740 * 0.02562 * 11 9 8 33 33 H 1.09001 * 109.47636 * 299.99631 * 12 11 9 34 34 H 1.09000 * 109.47431 * 60.00336 * 12 11 9 35 35 H 1.08998 * 109.47338 * 299.99922 * 13 12 11 36 36 H 1.08994 * 109.47536 * 60.00311 * 13 12 11 37 37 H 1.08998 * 109.46773 * 300.00173 * 14 13 12 38 38 H 1.09003 * 109.46628 * 59.99921 * 14 13 12 39 39 H 0.97001 * 120.00083 * 179.97438 * 19 18 16 40 40 H 1.09000 * 109.47297 * 354.90253 * 24 15 14 41 41 H 1.09003 * 109.47454 * 63.31055 * 25 24 15 42 42 H 1.09005 * 109.47463 * 183.31151 * 25 24 15 43 43 H 1.09004 * 109.47302 * 303.31286 * 25 24 15 44 44 H 1.09004 * 109.47270 * 61.62255 * 26 24 15 45 45 H 1.08999 * 109.46994 * 181.61718 * 26 24 15 46 46 H 1.09001 * 109.47206 * 301.61858 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2868 1.0429 0.0000 4 8 3.4540 0.7270 0.0005 5 6 3.6037 -0.6053 0.0004 6 17 5.1012 -1.4835 0.0003 7 6 2.3531 -1.1314 0.0003 8 6 1.9581 -2.5857 -0.0005 9 6 1.8260 -3.0710 1.4202 10 8 2.0327 -2.3109 2.3424 11 7 1.4781 -4.3497 1.6659 12 6 1.3502 -4.8215 3.0469 13 6 0.9478 -6.2977 3.0462 14 6 0.8137 -6.7904 4.4886 15 7 0.4290 -8.2039 4.4879 16 6 1.3935 -9.1761 4.4877 17 1 1.2447 -10.0842 3.9225 18 6 2.5624 -8.9941 5.2138 19 7 2.5919 -8.1327 6.2086 20 14 4.0936 -9.9719 4.7793 21 1 4.4906 -9.6737 3.3798 22 1 5.1980 -9.5964 5.6983 23 1 3.8093 -11.4230 4.9147 24 6 -0.9876 -8.5776 4.4875 25 6 -1.3256 -9.2944 3.1789 26 6 -1.2694 -9.5101 5.6674 27 1 -0.3633 -0.0004 -1.0276 28 1 -0.3633 -0.8897 0.5142 29 1 -0.3633 0.8903 0.5135 30 1 1.0041 -2.7028 -0.5146 31 1 2.7218 -3.1695 -0.5142 32 1 1.3131 -4.9577 0.9283 33 1 2.3045 -4.7050 3.5606 34 1 0.5870 -4.2376 3.5612 35 1 -0.0066 -6.4139 2.5328 36 1 1.7107 -6.8820 2.5319 37 1 1.7678 -6.6741 5.0024 38 1 0.0505 -6.2060 5.0026 39 1 3.4087 -8.0058 6.7163 40 1 -1.6000 -7.6806 4.5792 41 1 -0.7562 -10.2217 3.1149 42 1 -2.3917 -9.5202 3.1531 43 1 -1.0698 -8.6521 2.3361 44 1 -1.0559 -8.9895 6.6010 45 1 -2.3169 -9.8110 5.6505 46 1 -0.6361 -10.3940 5.5912 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753293711.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:09 Heat of formation + Delta-G solvation = 9.311777 kcal Electronic energy + Delta-G solvation = -27533.918618 eV Core-core repulsion = 23487.665734 eV Total energy + Delta-G solvation = -4046.252884 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.16107 -40.73790 -38.49987 -38.30772 -36.63973 -36.12026 -34.26651 -33.64697 -33.03904 -30.83430 -29.93207 -29.40441 -27.70117 -26.96244 -24.90718 -23.29848 -22.57486 -22.33385 -21.34696 -21.19619 -19.05180 -18.85706 -18.17369 -17.86440 -17.10547 -16.89221 -16.76857 -16.24042 -15.80758 -15.71445 -15.11693 -14.71991 -14.65235 -14.47989 -14.25537 -14.15101 -13.99774 -13.68158 -13.49825 -13.39712 -13.23886 -13.14393 -13.08455 -12.88478 -12.80191 -12.63534 -12.48100 -12.33920 -12.12191 -11.98467 -11.87982 -11.67655 -11.28618 -11.25966 -11.17602 -10.88606 -10.43352 -10.31368 -10.06345 -8.45984 -7.73675 -5.34958 -0.06875 0.10579 0.94222 1.47567 1.50374 1.55575 1.63542 2.24790 2.50284 2.56083 2.97636 3.32455 3.44520 3.65466 3.72974 3.74384 4.02015 4.23034 4.37118 4.38966 4.41419 4.56693 4.57616 4.65625 4.66272 4.68161 4.73926 4.77396 4.84735 5.00177 5.03469 5.14218 5.15404 5.19495 5.23850 5.26708 5.48930 5.54782 5.66187 5.71174 5.78511 5.94308 6.56041 6.60149 6.93739 7.26599 7.28442 7.98309 8.49728 9.21142 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013907 B = 0.002425 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.822153 B =11544.295956 C =12913.247463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.043 3.957 3 N -0.375 5.375 4 O 0.092 5.908 5 C 0.003 3.997 6 Cl 0.058 6.942 7 C -0.156 4.156 8 C -0.061 4.061 9 C 0.510 3.490 10 O -0.583 6.583 11 N -0.711 5.711 12 C 0.135 3.865 13 C -0.121 4.121 14 C 0.148 3.852 15 N -0.593 5.593 16 C -0.243 4.243 17 H 0.056 0.944 18 C -0.038 4.038 19 N -0.918 5.918 20 Si 0.945 3.055 21 H -0.277 1.277 22 H -0.301 1.301 23 H -0.279 1.279 24 C 0.152 3.848 25 C -0.142 4.142 26 C -0.138 4.138 27 H 0.112 0.888 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.155 0.845 31 H 0.135 0.865 32 H 0.418 0.582 33 H 0.039 0.961 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.024 0.976 39 H 0.247 0.753 40 H 0.058 0.942 41 H 0.035 0.965 42 H 0.065 0.935 43 H 0.050 0.950 44 H 0.022 0.978 45 H 0.065 0.935 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.782 11.318 -18.249 22.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.116 4.116 3 N -0.084 5.084 4 O 0.029 5.971 5 C -0.087 4.087 6 Cl 0.087 6.913 7 C -0.161 4.161 8 C -0.100 4.100 9 C 0.297 3.703 10 O -0.463 6.463 11 N -0.364 5.364 12 C 0.010 3.990 13 C -0.161 4.161 14 C 0.021 3.979 15 N -0.314 5.314 16 C -0.374 4.374 17 H 0.073 0.927 18 C -0.234 4.234 19 N -0.563 5.563 20 Si 0.774 3.226 21 H -0.203 1.203 22 H -0.227 1.227 23 H -0.204 1.204 24 C 0.046 3.954 25 C -0.201 4.201 26 C -0.197 4.197 27 H 0.130 0.870 28 H 0.111 0.889 29 H 0.098 0.902 30 H 0.173 0.827 31 H 0.153 0.847 32 H 0.255 0.745 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.042 0.958 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.055 0.945 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.042 0.958 45 H 0.084 0.916 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.587 13.097 -17.456 22.300 hybrid contribution 1.545 -1.512 0.303 2.183 sum -3.042 11.585 -17.153 20.921 Atomic orbital electron populations 1.20407 0.82958 1.04804 1.05360 1.23861 1.00556 0.87351 0.99862 1.73910 0.88785 1.23962 1.21790 1.84863 1.22320 1.21155 1.68768 1.24808 0.91770 0.84908 1.07191 1.98464 1.27760 1.68517 1.96581 1.20426 0.89737 0.97875 1.08050 1.20121 1.07998 0.88303 0.93624 1.20966 0.75827 0.81740 0.91789 1.90734 1.51435 1.56194 1.47961 1.45918 1.69770 1.11444 1.09249 1.21086 1.00057 0.95084 0.82774 1.22112 1.01229 0.92341 1.00398 1.20718 1.00168 0.83668 0.93297 1.44091 1.00645 1.01333 1.85364 1.18998 0.96867 0.99882 1.21636 0.92651 1.25734 1.02376 1.00065 0.95270 1.70115 1.26903 1.39883 1.19390 0.85691 0.80392 0.78984 0.77493 1.20347 1.22723 1.20446 1.20665 0.85136 0.95857 0.93747 1.22046 1.00178 1.00080 0.97761 1.21967 0.99717 0.99720 0.98302 0.86954 0.88925 0.90167 0.82740 0.84748 0.74514 0.94296 0.92363 0.91026 0.92821 0.92276 0.95791 0.94411 0.92422 0.94549 0.91607 0.93095 0.95848 0.91635 0.94553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 10.39 71.24 0.74 -0.30 16 2 C 0.04 0.89 7.32 43.55 0.32 1.21 16 3 N -0.37 -9.50 12.07 -49.43 -0.60 -10.09 16 4 O 0.09 2.32 11.20 71.36 0.80 3.12 16 5 C 0.00 0.07 8.12 67.23 0.55 0.62 16 6 Cl 0.06 1.13 29.23 -2.72 -0.08 1.05 16 7 C -0.16 -3.16 4.82 -19.71 -0.10 -3.25 16 8 C -0.06 -0.88 6.10 29.10 0.18 -0.70 16 9 C 0.51 12.11 7.82 87.66 0.69 12.80 16 10 O -0.58 -20.04 16.03 -3.04 -0.05 -20.09 16 11 N -0.71 -15.83 5.56 -463.06 -2.57 -18.40 16 12 C 0.13 4.11 5.67 86.38 0.49 4.60 16 13 C -0.12 -3.99 5.65 30.60 0.17 -3.81 16 14 C 0.15 6.41 5.28 86.38 0.46 6.87 16 15 N -0.59 -26.91 2.37 -678.04 -1.61 -28.52 16 16 C -0.24 -12.35 8.04 84.03 0.68 -11.67 16 17 H 0.06 2.82 7.14 -2.91 -0.02 2.80 16 18 C -0.04 -2.00 4.96 84.86 0.42 -1.58 16 19 N -0.92 -52.44 11.43 21.65 0.25 -52.19 16 20 Si 0.95 43.38 29.60 68.60 2.03 45.41 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 C 0.15 5.75 3.37 44.99 0.15 5.90 16 25 C -0.14 -4.48 9.19 71.98 0.66 -3.82 16 26 C -0.14 -5.29 9.11 71.98 0.66 -4.64 16 27 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.15 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.42 6.34 8.47 -92.71 -0.79 5.55 16 33 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.06 3.06 5.48 -2.39 -0.01 3.05 16 38 H 0.02 1.00 7.88 -2.39 -0.02 0.98 16 39 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 40 H 0.06 2.03 7.77 -2.39 -0.02 2.01 16 41 H 0.04 1.25 7.32 -2.39 -0.02 1.24 16 42 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 43 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 44 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 45 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.04 1.52 7.50 -2.39 -0.02 1.50 16 Total: -1.00 -69.93 400.38 4.44 -65.49 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.21 Total: 12.00 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: 6.06 Total: 2.21 kcal Atomic # 7 Polarization: -104.68 SS G_CDS: -4.53 Total: -109.21 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.75 Total: -16.97 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 17 Polarization: 1.13 SS G_CDS: -0.08 Total: 1.05 kcal Total: -69.93 4.44 -65.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753293711.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.806 kcal (2) G-P(sol) polarization free energy of solvation -69.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds