Wall clock time and date at job start Wed Apr 1 2020 01:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30012 * 127.33634 * 2 1 4 4 O 1.20658 * 112.30291 * 180.27159 * 3 2 1 5 5 C 1.33491 * 113.15442 * 359.73459 * 4 3 2 6 6 C 1.50700 * 126.82502 * 179.97438 * 5 4 3 7 7 F 1.39904 * 109.47325 * 119.99961 * 6 5 4 8 8 F 1.39900 * 109.47132 * 239.99579 * 6 5 4 9 9 C 1.37355 * 106.34657 * 359.97438 * 5 4 3 10 10 C 1.47397 * 128.56858 * 179.97438 * 9 5 4 11 11 O 1.21609 * 119.99533 * 90.00111 * 10 9 5 12 12 N 1.34776 * 120.00259 * 270.00434 * 10 9 5 13 13 C 1.46498 * 119.99583 * 180.02562 * 12 10 9 14 14 H 1.08993 * 110.82277 * 31.65838 * 13 12 10 15 15 C 1.55238 * 110.89672 * 268.20957 * 13 12 10 16 16 C 1.54266 * 104.23333 * 203.79695 * 15 13 12 17 17 C 1.53869 * 106.59800 * 23.61579 * 16 15 13 18 18 H 1.09001 * 110.02983 * 240.71432 * 17 16 15 19 19 C 1.52999 * 110.07634 * 119.30516 * 17 16 15 20 20 N 1.46498 * 109.47063 * 67.80747 * 19 17 16 21 21 C 1.36940 * 120.00382 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99661 * 359.97438 * 21 20 19 23 23 C 1.38811 * 120.00504 * 180.02562 * 21 20 19 24 24 N 1.31619 * 119.99532 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00074 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47232 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.47047 * 119.99951 * 25 23 21 28 28 H 1.48501 * 109.47095 * 239.99477 * 25 23 21 29 29 C 1.54266 * 106.60031 * 359.97438 * 17 16 15 30 30 H 1.09000 * 109.46748 * 270.14642 * 1 2 3 31 31 H 1.08992 * 109.46941 * 30.15165 * 1 2 3 32 32 H 1.09004 * 109.46813 * 150.15099 * 1 2 3 33 33 H 1.09000 * 109.47755 * 359.97438 * 6 5 4 34 34 H 0.96997 * 119.99636 * 359.97438 * 12 10 9 35 35 H 1.09005 * 110.46917 * 85.10725 * 15 13 12 36 36 H 1.09007 * 110.58541 * 322.54645 * 15 13 12 37 37 H 1.08999 * 110.03060 * 264.32313 * 16 15 13 38 38 H 1.09006 * 110.06829 * 142.91691 * 16 15 13 39 39 H 1.09000 * 109.47217 * 187.80732 * 19 17 16 40 40 H 1.08997 * 109.47142 * 307.80912 * 19 17 16 41 41 H 0.97003 * 120.00018 * 0.02562 * 20 19 17 42 42 H 0.97007 * 119.99644 * 179.97438 * 24 23 21 43 43 H 1.09002 * 110.48629 * 95.07240 * 29 17 16 44 44 H 1.08998 * 110.48744 * 217.58143 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 -0.0053 5 6 3.6494 -0.6008 -0.0041 6 6 4.9712 -1.3245 -0.0101 7 9 5.0697 -2.1251 1.1330 8 9 5.0573 -2.1289 -1.1514 9 6 2.3992 -1.1697 0.0036 10 6 2.0401 -2.5992 0.0074 11 8 1.8979 -3.1875 1.0622 12 7 1.8695 -3.2543 -1.1580 13 6 1.5121 -4.6750 -1.1540 14 1 0.9036 -4.9190 -0.2833 15 6 2.7825 -5.5658 -1.2049 16 6 2.2866 -6.9002 -1.7992 17 6 1.0119 -6.5785 -2.5987 18 1 0.1643 -7.1256 -2.1860 19 6 1.2076 -6.9485 -4.0703 20 7 1.3097 -8.4043 -4.1984 21 6 1.4896 -8.9723 -5.4314 22 1 1.5559 -8.3470 -6.3095 23 6 1.5859 -10.3517 -5.5528 24 7 1.5046 -11.1137 -4.4828 25 14 1.8306 -11.1264 -7.2349 26 1 1.8887 -10.0605 -8.2671 27 1 3.1006 -11.8961 -7.2453 28 1 0.6965 -12.0388 -7.5293 29 6 0.7772 -5.0599 -2.4619 30 1 -0.3633 0.0026 1.0277 31 1 -0.3633 0.8886 -0.5162 32 1 -0.3633 -0.8914 -0.5115 33 1 5.7835 -0.5978 -0.0161 34 1 1.9827 -2.7849 -1.9993 35 1 3.1806 -5.7194 -0.2018 36 1 3.5387 -5.1184 -1.8500 37 1 2.0577 -7.6034 -0.9984 38 1 3.0453 -7.3205 -2.4594 39 1 0.3570 -6.5914 -4.6510 40 1 2.1216 -6.4860 -4.4428 41 1 1.2498 -8.9659 -3.4098 42 1 1.5715 -12.0778 -4.5677 43 1 1.2078 -4.5293 -3.3111 44 1 -0.2880 -4.8444 -2.3789 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755738273.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:18 Heat of formation + Delta-G solvation = -72.133472 kcal Electronic energy + Delta-G solvation = -30102.203542 eV Core-core repulsion = 25500.622247 eV Total energy + Delta-G solvation = -4601.581295 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.66757 -47.67200 -45.57383 -40.12967 -38.13060 -35.22888 -34.91774 -33.70827 -33.26581 -31.07083 -29.43587 -28.77611 -28.22900 -27.24860 -25.06033 -24.13199 -22.21498 -21.73979 -20.97520 -20.75866 -19.24108 -18.81840 -18.65377 -17.99028 -17.67205 -17.53752 -17.08439 -16.47373 -16.03279 -15.61105 -14.87643 -14.54893 -14.51297 -14.40997 -14.04960 -13.99274 -13.91454 -13.73074 -13.43647 -13.40971 -13.22352 -13.11266 -12.79972 -12.14924 -12.11886 -11.89721 -11.84618 -11.55452 -11.12438 -10.87926 -10.81677 -10.67139 -10.54131 -10.53384 -10.37438 -10.31962 -10.09200 -9.87959 -9.67273 -9.25584 -8.86361 -6.90199 -5.75512 -3.03871 0.38200 1.25358 1.66026 1.98492 2.71779 3.22860 3.37622 3.43597 3.48813 3.49323 3.51437 3.87200 4.01646 4.20195 4.39692 4.50117 4.58250 4.68160 4.79745 4.90000 4.95447 5.00343 5.07275 5.44908 5.46895 5.54037 5.58355 5.59352 5.66258 5.81374 5.87857 6.03716 6.13143 6.26826 6.31016 6.38338 6.53775 6.67263 6.82551 6.93937 7.11984 7.46037 7.71062 7.77142 8.43698 9.54827 10.13729 10.48276 11.47487 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.019380 B = 0.002195 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.414169 B =12755.759866 C =13196.858196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.056 3.944 3 N -0.335 5.335 4 O 0.125 5.875 5 C -0.080 4.080 6 C 0.360 3.640 7 F -0.173 7.173 8 F -0.175 7.175 9 C -0.187 4.187 10 C 0.590 3.410 11 O -0.511 6.511 12 N -0.702 5.702 13 C 0.136 3.864 14 H 0.100 0.900 15 C -0.131 4.131 16 C -0.115 4.115 17 C -0.095 4.095 18 H 0.075 0.925 19 C 0.161 3.839 20 N -0.732 5.732 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.015 4.015 24 N -0.933 5.933 25 Si 0.906 3.094 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.120 4.120 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.146 0.854 34 H 0.403 0.597 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.016 0.984 40 H 0.019 0.981 41 H 0.384 0.616 42 H 0.254 0.746 43 H 0.073 0.927 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.308 26.561 10.708 28.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 N -0.037 5.037 4 O 0.057 5.943 5 C -0.144 4.144 6 C 0.305 3.695 7 F -0.154 7.154 8 F -0.156 7.156 9 C -0.194 4.194 10 C 0.373 3.627 11 O -0.386 6.386 12 N -0.352 5.352 13 C 0.033 3.967 14 H 0.118 0.882 15 C -0.170 4.170 16 C -0.153 4.153 17 C -0.115 4.115 18 H 0.094 0.906 19 C 0.033 3.967 20 N -0.377 5.377 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.211 4.211 24 N -0.582 5.582 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.158 4.158 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.164 0.836 34 H 0.238 0.762 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.034 0.966 40 H 0.037 0.963 41 H 0.218 0.782 42 H 0.064 0.936 43 H 0.092 0.908 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.005 27.370 11.288 29.759 hybrid contribution 0.097 -1.306 -1.054 1.682 sum 3.102 26.064 10.233 28.172 Atomic orbital electron populations 1.20312 0.84259 1.04695 1.04504 1.24888 0.99024 0.85742 1.00929 1.73631 0.88860 1.22954 1.18303 1.84567 1.21781 1.20769 1.67136 1.25006 0.97243 0.85690 1.06505 1.19245 0.92113 0.85463 0.72709 1.93152 1.96486 1.75662 1.50055 1.93130 1.96633 1.75546 1.50252 1.22300 0.92351 0.96313 1.08486 1.16823 0.77749 0.83423 0.84752 1.90881 1.49455 1.67385 1.30889 1.45967 1.69689 1.11799 1.07764 1.22271 0.96845 0.77744 0.99866 0.88191 1.22797 0.96893 0.96044 1.01279 1.22126 0.97855 0.95881 0.99423 1.21869 0.98289 0.93602 0.97696 0.90630 1.20728 0.97405 0.86846 0.91680 1.42379 1.87913 1.00109 1.07259 1.19270 1.41376 0.90130 0.86141 0.91229 1.24742 1.03066 0.96190 0.97112 1.69674 1.57521 1.03917 1.27077 0.86127 0.77332 0.79182 0.83619 1.20600 1.21879 1.21901 1.22609 1.00143 0.97165 0.95925 0.89087 0.89376 0.89326 0.83646 0.76214 0.91556 0.91319 0.91809 0.90198 0.96589 0.96326 0.78201 0.93582 0.90844 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.49 36.01 0.38 -0.12 16 2 C 0.06 0.50 7.59 -79.76 -0.61 -0.11 16 3 N -0.34 -3.17 12.01 34.78 0.42 -2.75 16 4 O 0.12 1.04 11.06 18.66 0.21 1.25 16 5 C -0.08 -0.67 6.98 -34.63 -0.24 -0.91 16 6 C 0.36 2.46 5.68 36.01 0.20 2.66 16 7 F -0.17 -1.69 17.32 2.25 0.04 -1.65 16 8 F -0.17 -1.48 17.32 2.25 0.04 -1.45 16 9 C -0.19 -1.87 6.24 -102.89 -0.64 -2.51 16 10 C 0.59 6.97 7.63 -12.53 -0.10 6.87 16 11 O -0.51 -7.96 16.75 5.27 0.09 -7.87 16 12 N -0.70 -7.10 5.19 -52.79 -0.27 -7.37 16 13 C 0.14 1.59 3.28 -65.76 -0.22 1.37 16 14 H 0.10 1.28 7.55 -51.93 -0.39 0.88 16 15 C -0.13 -1.71 6.53 -24.88 -0.16 -1.88 16 16 C -0.11 -1.75 6.19 -25.62 -0.16 -1.91 16 17 C -0.10 -1.46 2.96 -89.51 -0.26 -1.73 16 18 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 19 C 0.16 3.13 5.27 -4.04 -0.02 3.11 16 20 N -0.73 -18.37 5.39 -59.91 -0.32 -18.69 16 21 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 22 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 23 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 24 N -0.93 -28.30 13.06 55.49 0.72 -27.57 16 25 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 29 C -0.12 -1.39 5.97 -25.08 -0.15 -1.54 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.15 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.40 3.22 8.55 -40.82 -0.35 2.87 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.08 1.41 7.62 -51.93 -0.40 1.01 16 39 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.38 10.14 7.55 -40.82 -0.31 9.84 16 42 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.07 0.79 7.73 -51.93 -0.40 0.39 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 383.98 15.07 5.79 5.79 Total: -1.00 -34.32 383.98 -6.58 -40.91 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -6.04 Total: 6.04 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -2.22 Total: -4.03 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 0.55 Total: -56.38 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: 0.29 Total: -6.63 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.08 Total: -3.10 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.32 -6.58 -40.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755738273.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.227 kcal (2) G-P(sol) polarization free energy of solvation -34.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds