Wall clock time and date at job start Wed Apr 1 2020 01:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30012 * 127.33634 * 2 1 4 4 O 1.20658 * 112.30291 * 180.27159 * 3 2 1 5 5 C 1.33491 * 113.15442 * 359.73459 * 4 3 2 6 6 C 1.50700 * 126.82502 * 179.97438 * 5 4 3 7 7 F 1.39904 * 109.47325 * 119.99961 * 6 5 4 8 8 F 1.39900 * 109.47132 * 239.99579 * 6 5 4 9 9 C 1.37355 * 106.34657 * 359.97438 * 5 4 3 10 10 C 1.47397 * 128.56858 * 179.97438 * 9 5 4 11 11 O 1.21609 * 119.99533 * 90.00111 * 10 9 5 12 12 N 1.34776 * 120.00259 * 270.00434 * 10 9 5 13 13 C 1.46498 * 119.99583 * 180.02562 * 12 10 9 14 14 H 1.08993 * 110.82277 * 31.65838 * 13 12 10 15 15 C 1.55238 * 110.89672 * 268.20957 * 13 12 10 16 16 C 1.54266 * 104.23333 * 203.79695 * 15 13 12 17 17 C 1.53869 * 106.59800 * 23.61579 * 16 15 13 18 18 H 1.09001 * 110.02983 * 240.71432 * 17 16 15 19 19 C 1.52999 * 110.07634 * 119.30516 * 17 16 15 20 20 N 1.46498 * 109.47063 * 67.80747 * 19 17 16 21 21 C 1.36940 * 120.00382 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99661 * 359.97438 * 21 20 19 23 23 C 1.38811 * 120.00504 * 180.02562 * 21 20 19 24 24 N 1.31619 * 119.99532 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00074 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47232 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.47047 * 119.99951 * 25 23 21 28 28 H 1.48501 * 109.47095 * 239.99477 * 25 23 21 29 29 C 1.54266 * 106.60031 * 359.97438 * 17 16 15 30 30 H 1.09000 * 109.46748 * 270.14642 * 1 2 3 31 31 H 1.08992 * 109.46941 * 30.15165 * 1 2 3 32 32 H 1.09004 * 109.46813 * 150.15099 * 1 2 3 33 33 H 1.09000 * 109.47755 * 359.97438 * 6 5 4 34 34 H 0.96997 * 119.99636 * 359.97438 * 12 10 9 35 35 H 1.09005 * 110.46917 * 85.10725 * 15 13 12 36 36 H 1.09007 * 110.58541 * 322.54645 * 15 13 12 37 37 H 1.08999 * 110.03060 * 264.32313 * 16 15 13 38 38 H 1.09006 * 110.06829 * 142.91691 * 16 15 13 39 39 H 1.09000 * 109.47217 * 187.80732 * 19 17 16 40 40 H 1.08997 * 109.47142 * 307.80912 * 19 17 16 41 41 H 0.97003 * 120.00018 * 0.02562 * 20 19 17 42 42 H 0.97007 * 119.99644 * 179.97438 * 24 23 21 43 43 H 1.09002 * 110.48629 * 95.07240 * 29 17 16 44 44 H 1.08998 * 110.48744 * 217.58143 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 -0.0053 5 6 3.6494 -0.6008 -0.0041 6 6 4.9712 -1.3245 -0.0101 7 9 5.0697 -2.1251 1.1330 8 9 5.0573 -2.1289 -1.1514 9 6 2.3992 -1.1697 0.0036 10 6 2.0401 -2.5992 0.0074 11 8 1.8979 -3.1875 1.0622 12 7 1.8695 -3.2543 -1.1580 13 6 1.5121 -4.6750 -1.1540 14 1 0.9036 -4.9190 -0.2833 15 6 2.7825 -5.5658 -1.2049 16 6 2.2866 -6.9002 -1.7992 17 6 1.0119 -6.5785 -2.5987 18 1 0.1643 -7.1256 -2.1860 19 6 1.2076 -6.9485 -4.0703 20 7 1.3097 -8.4043 -4.1984 21 6 1.4896 -8.9723 -5.4314 22 1 1.5559 -8.3470 -6.3095 23 6 1.5859 -10.3517 -5.5528 24 7 1.5046 -11.1137 -4.4828 25 14 1.8306 -11.1264 -7.2349 26 1 1.8887 -10.0605 -8.2671 27 1 3.1006 -11.8961 -7.2453 28 1 0.6965 -12.0388 -7.5293 29 6 0.7772 -5.0599 -2.4619 30 1 -0.3633 0.0026 1.0277 31 1 -0.3633 0.8886 -0.5162 32 1 -0.3633 -0.8914 -0.5115 33 1 5.7835 -0.5978 -0.0161 34 1 1.9827 -2.7849 -1.9993 35 1 3.1806 -5.7194 -0.2018 36 1 3.5387 -5.1184 -1.8500 37 1 2.0577 -7.6034 -0.9984 38 1 3.0453 -7.3205 -2.4594 39 1 0.3570 -6.5914 -4.6510 40 1 2.1216 -6.4860 -4.4428 41 1 1.2498 -8.9659 -3.4098 42 1 1.5715 -12.0778 -4.5677 43 1 1.2078 -4.5293 -3.3111 44 1 -0.2880 -4.8444 -2.3789 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755738273.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:17 Heat of formation + Delta-G solvation = -94.818049 kcal Electronic energy + Delta-G solvation = -30103.187219 eV Core-core repulsion = 25500.622247 eV Total energy + Delta-G solvation = -4602.564972 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.28162 -48.30503 -46.24723 -41.11506 -39.31256 -36.48616 -35.90231 -34.93341 -34.15421 -32.88837 -30.14523 -29.99857 -29.29689 -28.03473 -26.37661 -25.36960 -23.95345 -22.49821 -21.79494 -21.70389 -20.51920 -19.61658 -19.31763 -19.06966 -18.55619 -18.38284 -18.17098 -17.55144 -16.87219 -16.77058 -16.52539 -15.85524 -15.42264 -15.16113 -15.14486 -15.06373 -14.67751 -14.64020 -14.49983 -14.38821 -14.32459 -14.17511 -13.73774 -13.46758 -13.30463 -12.95516 -12.82908 -12.72790 -12.60605 -12.43239 -12.12501 -12.09100 -11.86313 -11.73856 -11.57587 -11.49459 -11.27726 -11.17115 -11.12749 -10.91451 -10.23782 -8.96973 -7.93891 -5.22104 -0.29303 0.58295 0.99486 1.11683 1.47952 1.48669 1.58750 1.86915 2.57148 2.67031 2.83788 2.90882 3.23597 3.39703 3.41021 3.53875 3.62924 3.64301 3.75222 3.86083 3.93869 4.20133 4.28409 4.34824 4.44574 4.49692 4.52084 4.56534 4.62473 4.66532 4.79269 4.91594 4.98751 5.00586 5.07018 5.16066 5.24155 5.38703 5.43145 5.52110 5.56294 6.26304 6.29101 6.81042 6.90485 7.35083 8.13052 8.35166 9.30096 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.019380 B = 0.002195 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.414169 B =12755.759866 C =13196.858196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.057 3.943 3 N -0.351 5.351 4 O 0.133 5.867 5 C -0.066 4.066 6 C 0.353 3.647 7 F -0.192 7.192 8 F -0.185 7.185 9 C -0.214 4.214 10 C 0.596 3.404 11 O -0.554 6.554 12 N -0.688 5.688 13 C 0.146 3.854 14 H 0.092 0.908 15 C -0.123 4.123 16 C -0.111 4.111 17 C -0.089 4.089 18 H 0.068 0.932 19 C 0.160 3.840 20 N -0.746 5.746 21 C -0.241 4.241 22 H 0.076 0.924 23 C -0.079 4.079 24 N -0.971 5.971 25 Si 0.973 3.027 26 H -0.265 1.265 27 H -0.294 1.294 28 H -0.294 1.294 29 C -0.105 4.105 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.201 0.799 34 H 0.416 0.584 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.022 0.978 40 H 0.022 0.978 41 H 0.374 0.626 42 H 0.250 0.750 43 H 0.089 0.911 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.407 28.841 9.733 30.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 N -0.053 5.053 4 O 0.067 5.933 5 C -0.132 4.132 6 C 0.299 3.701 7 F -0.173 7.173 8 F -0.166 7.166 9 C -0.222 4.222 10 C 0.380 3.620 11 O -0.432 6.432 12 N -0.338 5.338 13 C 0.042 3.958 14 H 0.110 0.890 15 C -0.162 4.162 16 C -0.150 4.150 17 C -0.108 4.108 18 H 0.086 0.914 19 C 0.034 3.966 20 N -0.389 5.389 21 C -0.373 4.373 22 H 0.094 0.906 23 C -0.271 4.271 24 N -0.622 5.622 25 Si 0.802 3.198 26 H -0.189 1.189 27 H -0.221 1.221 28 H -0.221 1.221 29 C -0.144 4.144 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.218 0.782 34 H 0.254 0.746 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.205 0.795 42 H 0.059 0.941 43 H 0.107 0.893 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.106 29.720 10.270 31.597 hybrid contribution 0.081 -1.950 -0.738 2.086 sum 3.187 27.770 9.532 29.533 Atomic orbital electron populations 1.20461 0.82631 1.05759 1.05127 1.25261 1.00070 0.85062 0.99989 1.73623 0.89221 1.23257 1.19245 1.84562 1.21482 1.20512 1.66769 1.25318 0.97525 0.85675 1.04648 1.19949 0.92924 0.85716 0.71519 1.93113 1.96535 1.76409 1.51235 1.93104 1.96643 1.76036 1.50771 1.22202 0.93569 0.95574 1.10830 1.16978 0.76746 0.84001 0.84266 1.90861 1.51441 1.68522 1.32374 1.45800 1.68823 1.11076 1.08147 1.22028 0.95813 0.78352 0.99630 0.89042 1.22695 0.97654 0.95103 1.00707 1.22022 0.97239 0.96934 0.98768 1.21763 0.97870 0.96367 0.94835 0.91395 1.20904 0.97436 0.83766 0.94506 1.42617 1.87791 1.02397 1.06059 1.19684 1.39755 0.90536 0.87364 0.90606 1.25576 1.03921 0.96901 1.00677 1.69831 1.59374 1.03795 1.29199 0.85078 0.76669 0.78290 0.79766 1.18918 1.22145 1.22103 1.22499 1.01522 0.94069 0.96286 0.88615 0.87866 0.88690 0.78213 0.74628 0.92260 0.90763 0.92479 0.92854 0.96017 0.96031 0.79461 0.94077 0.89252 0.89179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 10.49 71.24 0.75 -0.12 16 2 C 0.06 0.94 7.59 45.16 0.34 1.28 16 3 N -0.35 -6.02 12.01 -44.77 -0.54 -6.56 16 4 O 0.13 1.96 11.06 77.01 0.85 2.81 16 5 C -0.07 -1.00 6.98 25.48 0.18 -0.82 16 6 C 0.35 4.07 5.68 71.24 0.40 4.48 16 7 F -0.19 -3.56 17.32 44.97 0.78 -2.78 16 8 F -0.18 -2.79 17.32 44.97 0.78 -2.01 16 9 C -0.21 -4.00 6.24 -18.74 -0.12 -4.11 16 10 C 0.60 13.48 7.63 86.66 0.66 14.14 16 11 O -0.55 -17.16 16.75 -4.06 -0.07 -17.23 16 12 N -0.69 -12.72 5.19 -439.18 -2.28 -14.99 16 13 C 0.15 3.19 3.28 46.40 0.15 3.34 16 14 H 0.09 2.25 7.55 -2.39 -0.02 2.23 16 15 C -0.12 -3.13 6.53 31.79 0.21 -2.92 16 16 C -0.11 -3.43 6.19 31.32 0.19 -3.24 16 17 C -0.09 -2.67 2.96 -10.07 -0.03 -2.70 16 18 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 19 C 0.16 6.10 5.27 86.38 0.46 6.56 16 20 N -0.75 -37.69 5.39 -343.46 -1.85 -39.54 16 21 C -0.24 -13.47 9.99 84.03 0.84 -12.63 16 22 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 23 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 24 N -0.97 -59.93 13.06 21.65 0.28 -59.65 16 25 Si 0.97 46.22 29.55 68.60 2.03 48.24 16 26 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 27 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 28 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 29 C -0.11 -2.20 5.97 31.66 0.19 -2.01 16 30 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.20 0.09 8.14 -2.39 -0.02 0.07 16 34 H 0.42 5.60 8.55 -92.71 -0.79 4.81 16 35 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.05 1.92 7.62 -2.38 -0.02 1.91 16 39 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.37 20.21 7.55 -92.71 -0.70 19.51 16 42 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 43 H 0.09 1.63 7.73 -2.39 -0.02 1.62 16 44 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -74.98 383.98 4.24 -70.74 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: -0.43 Total: 23.82 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: 4.69 Total: -2.84 kcal Atomic # 7 Polarization: -116.36 SS G_CDS: -4.38 Total: -120.74 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.78 Total: -14.42 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 1.56 Total: -4.79 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.24 kcal Total: -74.98 4.24 -70.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755738273.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.082 kcal (2) G-P(sol) polarization free energy of solvation -74.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds