Wall clock time and date at job start Wed Apr 1 2020 01:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30019 * 127.33370 * 2 1 4 4 O 1.20656 * 112.30264 * 179.97438 * 3 2 1 5 5 C 1.33497 * 113.15493 * 359.71639 * 4 3 2 6 6 C 1.50698 * 126.82759 * 180.30595 * 5 4 3 7 7 F 1.39898 * 109.47157 * 120.17442 * 6 5 4 8 8 F 1.39903 * 109.46988 * 240.17405 * 6 5 4 9 9 C 1.37364 * 106.34188 * 0.45429 * 5 4 3 10 10 C 1.47396 * 128.56206 * 179.85386 * 9 5 4 11 11 O 1.21609 * 120.00022 * 269.67363 * 10 9 5 12 12 N 1.34778 * 119.99731 * 89.67706 * 10 9 5 13 13 C 1.46501 * 119.99537 * 179.97438 * 12 10 9 14 14 H 1.09002 * 110.01794 * 325.69939 * 13 12 10 15 15 C 1.53876 * 110.03215 * 87.09365 * 13 12 10 16 16 C 1.54264 * 106.60102 * 119.33241 * 15 13 12 17 17 C 1.54894 * 104.19615 * 23.60756 * 16 15 13 18 18 H 1.08997 * 110.75486 * 80.37417 * 17 16 15 19 19 C 1.53000 * 110.75537 * 203.56160 * 17 16 15 20 20 N 1.46500 * 109.47228 * 293.54638 * 19 17 16 21 21 C 1.36930 * 120.00376 * 180.02562 * 20 19 17 22 22 H 1.08006 * 119.99610 * 359.97438 * 21 20 19 23 23 C 1.38806 * 120.00414 * 180.02562 * 21 20 19 24 24 N 1.31619 * 120.00581 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 119.99918 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.46712 * 90.00091 * 25 23 21 27 27 H 1.48495 * 109.47302 * 210.00056 * 25 23 21 28 28 H 1.48496 * 109.47217 * 330.00538 * 25 23 21 29 29 C 1.54263 * 110.03040 * 204.30537 * 13 12 10 30 30 H 1.09007 * 109.47165 * 270.04075 * 1 2 3 31 31 H 1.08999 * 109.47761 * 30.04116 * 1 2 3 32 32 H 1.09001 * 109.47225 * 150.04186 * 1 2 3 33 33 H 1.09001 * 109.47392 * 0.17200 * 6 5 4 34 34 H 0.96992 * 120.00283 * 359.97438 * 12 10 9 35 35 H 1.09002 * 110.03233 * 238.62039 * 15 13 12 36 36 H 1.09001 * 110.03366 * 359.97438 * 15 13 12 37 37 H 1.08995 * 110.48853 * 142.29018 * 16 15 13 38 38 H 1.09007 * 110.48608 * 264.79840 * 16 15 13 39 39 H 1.08997 * 109.46828 * 53.54622 * 19 17 16 40 40 H 1.08999 * 109.46707 * 173.54729 * 19 17 16 41 41 H 0.97003 * 119.99571 * 0.02562 * 20 19 17 42 42 H 0.96996 * 120.00799 * 179.97438 * 24 23 21 43 43 H 1.08996 * 110.48639 * 335.74236 * 29 13 12 44 44 H 1.09002 * 110.48477 * 98.38059 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4607 0.7209 0.0005 5 6 3.6494 -0.6007 0.0070 6 6 4.9712 -1.3244 0.0159 7 9 5.0568 -2.1250 1.1600 8 9 5.0701 -2.1287 -1.1246 9 6 2.3991 -1.1696 0.0006 10 6 2.0402 -2.5992 0.0008 11 8 1.8924 -3.1892 -1.0523 12 7 1.8756 -3.2524 1.1681 13 6 1.5183 -4.6732 1.1683 14 1 0.8677 -4.8944 0.3221 15 6 2.7899 -5.5366 1.0953 16 6 2.8111 -6.3990 2.3742 17 6 1.3268 -6.4654 2.8121 18 1 0.7860 -7.2130 2.2319 19 6 1.2160 -6.7598 4.3094 20 7 1.7140 -8.1108 4.5797 21 6 1.7127 -8.5978 5.8595 22 1 1.3447 -7.9857 6.6698 23 6 2.1851 -9.8776 6.1157 24 7 2.1833 -10.3459 7.3457 25 14 2.8221 -10.9359 4.7143 26 1 4.2781 -10.7018 4.5397 27 1 2.5851 -12.3679 5.0282 28 1 2.1097 -10.5793 3.4612 29 6 0.8106 -5.0399 2.4890 30 1 -0.3634 0.0007 1.0277 31 1 -0.3634 0.8896 -0.5144 32 1 -0.3634 -0.8904 -0.5132 33 1 5.7834 -0.5975 0.0194 34 1 1.9937 -2.7820 2.0080 35 1 2.7566 -6.1767 0.2137 36 1 3.6729 -4.8985 1.0594 37 1 3.1892 -7.3974 2.1548 38 1 3.4175 -5.9234 3.1451 39 1 1.8096 -6.0354 4.8670 40 1 0.1728 -6.6888 4.6173 41 1 2.0448 -8.6603 3.8520 42 1 2.5131 -11.2404 7.5247 43 1 1.0923 -4.3436 3.2789 44 1 -0.2709 -5.0469 2.3532 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755738274.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:20 Heat of formation + Delta-G solvation = -67.109355 kcal Electronic energy + Delta-G solvation = -30270.955597 eV Core-core repulsion = 25669.592164 eV Total energy + Delta-G solvation = -4601.363433 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.70136 -47.70525 -45.59708 -40.24867 -38.20443 -35.25323 -35.07697 -33.75380 -33.28579 -31.31938 -29.47081 -29.09902 -28.40584 -27.35584 -25.15830 -24.24191 -21.96416 -21.76197 -21.03065 -20.55879 -19.65420 -18.87312 -18.67617 -18.02346 -17.70754 -17.56595 -17.55770 -16.56914 -16.12818 -15.67393 -14.82299 -14.55347 -14.51376 -14.43656 -14.10975 -14.02979 -13.97748 -13.94016 -13.67579 -13.46638 -13.24944 -13.15566 -12.76102 -12.24151 -12.14965 -12.06618 -11.96328 -11.76885 -11.40665 -10.93872 -10.91146 -10.65519 -10.55999 -10.53395 -10.40351 -10.36804 -10.34766 -10.05486 -9.58789 -9.36561 -8.88912 -7.22109 -5.76557 -3.11730 0.35568 1.23003 1.63311 1.94057 2.67994 3.20347 3.34743 3.37900 3.40787 3.45793 3.46495 3.84240 3.98773 4.17268 4.34975 4.47367 4.56892 4.59420 4.61499 4.87124 4.89567 4.92314 5.05365 5.26205 5.42997 5.44271 5.49090 5.50356 5.55683 5.68911 5.76543 5.85880 5.93210 5.99351 6.15835 6.27333 6.41532 6.43570 6.67292 6.79868 7.06119 7.43792 7.72162 7.99868 8.42725 9.22240 9.94732 10.14828 11.41985 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.018424 B = 0.002402 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.414334 B =11653.288839 C =12188.981927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.056 3.944 3 N -0.335 5.335 4 O 0.125 5.875 5 C -0.079 4.079 6 C 0.360 3.640 7 F -0.174 7.174 8 F -0.173 7.173 9 C -0.188 4.188 10 C 0.590 3.410 11 O -0.512 6.512 12 N -0.703 5.703 13 C 0.140 3.860 14 H 0.094 0.906 15 C -0.134 4.134 16 C -0.114 4.114 17 C -0.100 4.100 18 H 0.079 0.921 19 C 0.166 3.834 20 N -0.755 5.755 21 C -0.243 4.243 22 H 0.089 0.911 23 C 0.003 3.997 24 N -0.935 5.935 25 Si 0.884 3.116 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.277 1.277 29 C -0.119 4.119 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.147 0.853 34 H 0.403 0.597 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.027 0.973 40 H 0.026 0.974 41 H 0.361 0.639 42 H 0.259 0.741 43 H 0.076 0.924 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.691 24.746 -17.452 30.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 N -0.037 5.037 4 O 0.058 5.942 5 C -0.144 4.144 6 C 0.304 3.696 7 F -0.155 7.155 8 F -0.154 7.154 9 C -0.195 4.195 10 C 0.373 3.627 11 O -0.387 6.387 12 N -0.354 5.354 13 C 0.037 3.963 14 H 0.112 0.888 15 C -0.173 4.173 16 C -0.152 4.152 17 C -0.119 4.119 18 H 0.097 0.903 19 C 0.039 3.961 20 N -0.401 5.401 21 C -0.373 4.373 22 H 0.107 0.893 23 C -0.192 4.192 24 N -0.583 5.583 25 Si 0.714 3.286 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.203 1.203 29 C -0.158 4.158 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.164 0.836 34 H 0.239 0.761 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.045 0.955 40 H 0.044 0.956 41 H 0.194 0.806 42 H 0.069 0.931 43 H 0.094 0.906 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.326 25.559 -17.968 31.271 hybrid contribution 0.486 -1.471 -0.510 1.630 sum 1.812 24.088 -18.478 30.413 Atomic orbital electron populations 1.20320 0.84262 1.04869 1.04399 1.24882 0.99022 0.85722 1.00937 1.73638 0.88853 1.22951 1.18257 1.84571 1.21783 1.20756 1.67105 1.25006 0.97219 0.85711 1.06473 1.19250 0.92158 0.85478 0.72681 1.93132 1.96639 1.75735 1.50027 1.93149 1.96493 1.75476 1.50291 1.22289 0.92357 0.96306 1.08575 1.16832 0.77728 0.83451 0.84738 1.90877 1.49465 1.67320 1.31087 1.46171 1.69673 1.11777 1.07799 1.21840 0.96679 0.78095 0.99696 0.88831 1.22595 0.97191 0.98379 0.99146 1.22372 0.96750 0.99876 0.96217 1.22344 0.95956 0.95427 0.98222 0.90305 1.20593 0.97039 0.87559 0.90886 1.42690 1.77472 1.13186 1.06726 1.19059 1.35403 0.98306 0.84544 0.89289 1.24672 1.01365 0.97218 0.95979 1.69698 1.52770 1.17888 1.17984 0.86550 0.79067 0.80426 0.82529 1.21052 1.21755 1.20291 1.22635 1.00081 0.97731 0.95347 0.89008 0.89406 0.89290 0.83617 0.76140 0.91194 0.91388 0.91457 0.91007 0.95509 0.95632 0.80629 0.93074 0.90585 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.49 36.00 0.38 -0.10 16 2 C 0.06 0.49 7.59 -79.77 -0.61 -0.12 16 3 N -0.34 -3.12 12.01 34.78 0.42 -2.70 16 4 O 0.13 1.03 11.06 18.64 0.21 1.23 16 5 C -0.08 -0.65 6.98 -34.63 -0.24 -0.89 16 6 C 0.36 2.39 5.68 36.00 0.20 2.59 16 7 F -0.17 -1.46 17.32 2.25 0.04 -1.42 16 8 F -0.17 -1.65 17.32 2.25 0.04 -1.61 16 9 C -0.19 -1.83 6.24 -102.89 -0.64 -2.47 16 10 C 0.59 6.69 7.62 -12.53 -0.10 6.59 16 11 O -0.51 -7.67 16.77 5.27 0.09 -7.58 16 12 N -0.70 -6.75 4.98 -53.80 -0.27 -7.02 16 13 C 0.14 1.51 3.23 -66.81 -0.22 1.29 16 14 H 0.09 1.08 7.59 -51.93 -0.39 0.69 16 15 C -0.13 -1.61 6.59 -25.61 -0.17 -1.78 16 16 C -0.11 -1.57 5.96 -25.07 -0.15 -1.72 16 17 C -0.10 -1.41 2.96 -88.56 -0.26 -1.67 16 18 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 19 C 0.17 3.05 5.71 -4.04 -0.02 3.03 16 20 N -0.76 -17.67 5.25 -59.91 -0.31 -17.98 16 21 C -0.24 -6.87 10.47 -15.06 -0.16 -7.03 16 22 H 0.09 2.69 8.06 -52.48 -0.42 2.26 16 23 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 24 N -0.94 -29.44 13.97 55.49 0.78 -28.67 16 25 Si 0.88 22.13 27.74 -169.99 -4.71 17.41 16 26 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 28 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 29 C -0.12 -1.27 5.99 -25.01 -0.15 -1.42 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.15 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.40 3.10 8.33 -40.82 -0.34 2.76 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.83 7.92 -51.93 -0.41 0.42 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.07 1.03 8.02 -51.92 -0.42 0.61 16 39 H 0.03 0.50 8.10 -51.93 -0.42 0.08 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.36 8.26 5.39 -40.82 -0.22 8.04 16 42 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 43 H 0.08 0.74 7.65 -51.93 -0.40 0.34 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 380.82 15.07 5.74 5.74 Total: -1.00 -35.16 380.82 -6.21 -41.37 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -6.00 Total: 4.92 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -2.23 Total: -3.70 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: 0.61 Total: -56.37 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: 0.29 Total: -6.34 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.08 Total: -3.03 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.71 Total: 17.41 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.16 -6.21 -41.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755738274.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.737 kcal (2) G-P(sol) polarization free energy of solvation -35.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds