Wall clock time and date at job start Wed Apr 1 2020 02:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99377 * 2 1 4 4 H 1.48500 * 109.46920 * 269.99676 * 3 2 1 5 5 H 1.48500 * 109.47573 * 30.00131 * 3 2 1 6 6 H 1.48507 * 109.46706 * 150.00146 * 3 2 1 7 7 C 1.38717 * 120.00143 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00100 * 0.02562 * 7 2 1 9 9 O 1.34781 * 119.99814 * 180.02562 * 7 2 1 10 10 C 1.35568 * 116.99906 * 185.05740 * 9 7 2 11 11 C 1.39169 * 119.89913 * 354.37454 * 10 9 7 12 12 C 1.37607 * 120.10372 * 179.97438 * 11 10 9 13 13 C 1.40023 * 119.89459 * 0.02562 * 12 11 10 14 14 C 1.46960 * 120.10013 * 179.97438 * 13 12 11 15 15 C 1.35020 * 120.00114 * 136.90480 * 14 13 12 16 16 C 1.46251 * 119.99746 * 348.50565 * 15 14 13 17 17 O 1.21719 * 120.00369 * 353.22329 * 16 15 14 18 18 N 1.34778 * 120.00051 * 173.22611 * 16 15 14 19 19 C 1.46499 * 120.00211 * 180.02562 * 18 16 15 20 20 H 1.09005 * 112.87847 * 23.69542 * 19 18 16 21 21 C 1.53907 * 113.64663 * 252.28185 * 19 18 16 22 22 C 1.53319 * 86.50507 * 219.30055 * 21 19 18 23 23 H 1.09004 * 111.13770 * 273.98550 * 22 21 19 24 24 O 1.40548 * 115.45726 * 145.78158 * 22 21 19 25 25 C 1.41559 * 119.50403 * 292.06264 * 24 22 21 26 26 C 1.52803 * 110.90148 * 312.25398 * 25 24 22 27 27 C 1.53186 * 108.60748 * 61.15977 * 26 25 24 28 28 C 1.52912 * 87.55109 * 26.42598 * 22 21 19 29 29 H 1.08997 * 114.72018 * 218.42708 * 28 22 21 30 30 C 1.40029 * 119.79768 * 0.25744 * 13 12 11 31 31 C 1.37592 * 119.89722 * 359.46284 * 30 13 12 32 32 H 0.97001 * 120.00334 * 359.97438 * 1 2 3 33 33 H 1.07995 * 119.95253 * 359.96789 * 11 10 9 34 34 H 1.07998 * 120.05350 * 179.97438 * 12 11 10 35 35 H 1.07999 * 119.99757 * 316.90429 * 14 13 12 36 36 H 1.08001 * 119.99868 * 168.78506 * 15 14 13 37 37 H 0.96996 * 119.99744 * 0.02562 * 18 16 15 38 38 H 1.08999 * 113.70846 * 333.69956 * 21 19 18 39 39 H 1.09001 * 113.70767 * 104.89990 * 21 19 18 40 40 H 1.09002 * 109.19735 * 191.89186 * 25 24 22 41 41 H 1.09002 * 109.19631 * 72.61746 * 25 24 22 42 42 H 1.08999 * 109.60820 * 301.42873 * 26 25 24 43 43 H 1.08994 * 109.76396 * 180.98302 * 26 25 24 44 44 H 1.09000 * 109.58431 * 179.78402 * 27 26 25 45 45 H 1.09001 * 109.58833 * 59.35994 * 27 26 25 46 46 H 1.08001 * 120.04490 * 179.72487 * 30 13 12 47 47 H 1.08001 * 119.95225 * 180.27126 * 31 30 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2489 1.6178 0.0000 4 1 2.4964 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0087 -1.2013 0.0005 8 1 1.4688 -2.1366 0.0005 9 8 3.3565 -1.2012 0.0011 10 6 3.9721 -2.4044 -0.1049 11 6 3.2173 -3.5736 -0.0897 12 6 3.8377 -4.7971 -0.1975 13 6 5.2307 -4.8646 -0.3221 14 6 5.8980 -6.1690 -0.4370 15 6 6.8922 -6.3420 -1.3341 16 6 7.1386 -5.3266 -2.3574 17 8 6.3739 -4.3876 -2.4797 18 7 8.2124 -5.4307 -3.1652 19 6 8.4596 -4.4133 -4.1900 20 1 7.9937 -3.4557 -3.9575 21 6 8.1874 -4.9024 -5.6237 22 6 9.4335 -4.1073 -6.0311 23 1 9.1852 -3.0662 -6.2377 24 8 10.1964 -4.6697 -7.0689 25 6 10.8966 -5.8791 -6.8429 26 6 11.6796 -5.8190 -5.5321 27 6 10.6901 -5.6150 -4.3806 28 6 9.9414 -4.2967 -4.6013 29 1 10.4563 -3.4322 -4.1823 30 6 5.9865 -3.6859 -0.3310 31 6 5.3570 -2.4667 -0.2285 32 1 -0.4851 0.8400 0.0004 33 1 2.1430 -3.5206 0.0070 34 1 3.2512 -5.7039 -0.1852 35 1 5.5932 -6.9891 0.1961 36 1 7.5026 -7.2323 -1.2986 37 1 8.8216 -6.1792 -3.0681 38 1 8.2955 -5.9800 -5.7471 39 1 7.2619 -4.5158 -6.0504 40 1 11.5895 -6.0514 -7.6665 41 1 10.1839 -6.7026 -6.7971 42 1 12.3815 -4.9857 -5.5633 43 1 12.2247 -6.7513 -5.3853 44 1 11.2323 -5.5736 -3.4360 45 1 9.9784 -6.4403 -4.3599 46 1 7.0616 -3.7336 -0.4225 47 1 5.9387 -1.5569 -0.2396 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491998993.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:48 Heat of formation + Delta-G solvation = -25.935061 kcal Electronic energy + Delta-G solvation = -29358.697055 eV Core-core repulsion = 25281.055852 eV Total energy + Delta-G solvation = -4077.641203 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.162 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.41144 -39.60940 -38.78949 -36.93815 -36.21696 -33.63450 -33.16514 -32.97097 -32.26161 -30.21487 -28.35883 -27.85874 -25.74004 -25.16770 -24.14874 -23.06351 -21.98740 -21.83858 -20.91938 -19.35304 -18.69012 -17.82533 -17.45695 -17.35935 -16.84763 -16.57239 -15.69420 -15.26437 -15.08326 -14.76503 -14.62499 -14.47793 -14.11374 -13.87198 -13.70675 -13.67081 -13.40105 -13.31566 -12.91101 -12.85232 -12.56003 -12.27285 -12.22456 -12.10084 -11.95390 -11.66893 -11.49275 -11.20348 -10.95822 -10.89893 -10.76989 -10.66912 -10.40114 -10.14582 -9.63184 -9.54109 -9.46576 -9.22738 -8.99016 -8.75723 -8.01914 -6.98845 -6.42092 -4.05965 1.15500 2.32390 2.60697 3.15163 3.23209 3.27414 3.41581 3.45872 3.52157 3.97836 4.20932 4.24441 4.27896 4.39470 4.48614 4.61462 4.68247 4.88128 4.89119 4.95727 5.02651 5.11883 5.14243 5.15012 5.24760 5.31939 5.37222 5.43801 5.49597 5.55691 5.61166 5.66222 5.74160 5.75331 5.82091 6.01088 6.17403 6.25019 6.34850 6.48964 6.49943 6.66181 6.91635 7.15749 7.17407 7.30853 7.37773 7.59295 7.66956 7.84467 8.06209 8.46660 8.93061 9.57303 10.65219 Molecular weight = 343.16amu Principal moments of inertia in cm(-1) A = 0.015157 B = 0.002382 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.937113 B =11752.494785 C =12959.271500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.387 4.387 8 H 0.108 0.892 9 O -0.213 6.213 10 C 0.177 3.823 11 C -0.238 4.238 12 C -0.043 4.043 13 C -0.182 4.182 14 C 0.027 3.973 15 C -0.266 4.266 16 C 0.540 3.460 17 O -0.511 6.511 18 N -0.725 5.725 19 C 0.133 3.867 20 H 0.120 0.880 21 C -0.185 4.185 22 C 0.091 3.909 23 H 0.123 0.877 24 O -0.372 6.372 25 C 0.069 3.931 26 C -0.156 4.156 27 C -0.109 4.109 28 C -0.150 4.150 29 H 0.092 0.908 30 C 0.010 3.990 31 C -0.203 4.203 32 H 0.280 0.720 33 H 0.132 0.868 34 H 0.109 0.891 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.395 0.605 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.045 0.955 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.103 0.897 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.150 -14.966 -8.654 28.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.463 4.463 8 H 0.125 0.875 9 O -0.117 6.117 10 C 0.124 3.876 11 C -0.257 4.257 12 C -0.061 4.061 13 C -0.182 4.182 14 C 0.008 3.992 15 C -0.287 4.287 16 C 0.330 3.670 17 O -0.387 6.387 18 N -0.378 5.378 19 C 0.027 3.973 20 H 0.138 0.862 21 C -0.225 4.225 22 C 0.033 3.967 23 H 0.140 0.860 24 O -0.290 6.290 25 C -0.008 4.008 26 C -0.194 4.194 27 C -0.147 4.147 28 C -0.169 4.169 29 H 0.111 0.889 30 C -0.008 4.008 31 C -0.222 4.222 32 H 0.090 0.910 33 H 0.150 0.850 34 H 0.127 0.873 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.231 0.769 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.111 0.889 41 H 0.064 0.936 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.121 0.879 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 22.448 -13.811 -8.875 27.810 hybrid contribution 0.397 -0.046 0.232 0.463 sum 22.846 -13.857 -8.643 28.082 Atomic orbital electron populations 1.69625 1.05613 1.28564 1.47616 1.24495 0.95042 0.98883 0.95614 0.86179 0.80345 0.81345 0.79045 1.19812 1.20748 1.18310 1.20829 0.76892 0.96704 1.51865 0.87461 1.83503 1.22689 1.26244 1.79227 1.19269 0.91623 0.85249 0.91455 1.21070 1.00929 0.91796 1.11909 1.20801 0.92909 0.96703 0.95719 1.18352 0.93384 0.91981 1.14533 1.22354 0.90017 0.95087 0.91770 1.22606 1.04761 1.01305 1.00077 1.18542 0.80664 0.86063 0.81754 1.90990 1.44976 1.32590 1.70118 1.46002 1.28016 1.27649 1.36143 1.22300 0.94589 0.93928 0.86469 0.86205 1.24110 0.99962 1.01432 0.96964 1.22733 0.90304 0.97936 0.85770 0.85951 1.86721 1.64076 1.39900 1.38337 1.22269 0.94516 0.86521 0.97470 1.22083 0.98584 1.03141 0.95609 1.21426 0.97978 0.96177 0.99085 1.23490 0.96382 0.99487 0.97575 0.88919 1.20437 0.97514 0.90810 0.92045 1.19997 0.91750 0.97709 1.12747 0.90994 0.85023 0.87324 0.85909 0.86162 0.76881 0.89719 0.90170 0.88914 0.93642 0.90759 0.90430 0.90735 0.91326 0.87942 0.86852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.60 13.96 55.48 0.77 -24.82 16 2 C 0.06 1.80 5.49 -17.51 -0.10 1.71 16 3 Si 0.91 22.05 28.62 -169.99 -4.86 17.19 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.26 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.39 -11.16 9.94 30.91 0.31 -10.85 16 8 H 0.11 3.15 5.41 -52.49 -0.28 2.87 16 9 O -0.21 -5.80 8.57 0.75 0.01 -5.79 16 10 C 0.18 4.31 6.66 -38.89 -0.26 4.05 16 11 C -0.24 -5.39 9.14 -39.47 -0.36 -5.75 16 12 C -0.04 -0.82 9.79 -39.14 -0.38 -1.20 16 13 C -0.18 -3.23 4.54 -105.02 -0.48 -3.70 16 14 C 0.03 0.36 9.80 -37.19 -0.36 0.00 16 15 C -0.27 -3.15 9.90 -37.51 -0.37 -3.52 16 16 C 0.54 7.46 6.76 -13.04 -0.09 7.38 16 17 O -0.51 -9.43 11.78 5.17 0.06 -9.37 16 18 N -0.72 -7.36 5.16 -54.18 -0.28 -7.64 16 19 C 0.13 1.34 4.08 -66.84 -0.27 1.07 16 20 H 0.12 1.48 7.46 -51.93 -0.39 1.09 16 21 C -0.19 -1.77 7.23 -26.09 -0.19 -1.96 16 22 C 0.09 0.79 4.64 -26.63 -0.12 0.67 16 23 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 24 O -0.37 -3.49 10.37 -34.07 -0.35 -3.84 16 25 C 0.07 0.46 6.67 37.06 0.25 0.70 16 26 C -0.16 -0.86 6.11 -26.74 -0.16 -1.02 16 27 C -0.11 -0.65 4.70 -26.53 -0.12 -0.78 16 28 C -0.15 -1.16 4.34 -89.92 -0.39 -1.55 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 C 0.01 0.20 6.60 -39.15 -0.26 -0.06 16 31 C -0.20 -4.36 9.97 -39.47 -0.39 -4.76 16 32 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.13 3.10 5.62 -52.49 -0.29 2.80 16 34 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.40 2.92 6.30 -40.82 -0.26 2.67 16 38 H 0.08 0.78 7.17 -51.93 -0.37 0.41 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.29 7.73 -51.93 -0.40 -0.11 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.39 5.71 -51.93 -0.30 0.10 16 46 H 0.10 1.75 7.01 -52.49 -0.37 1.38 16 47 H 0.11 2.31 8.06 -52.49 -0.42 1.88 16 LS Contribution 376.10 15.07 5.67 5.67 Total: -1.00 -33.01 376.10 -9.20 -42.21 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -6.45 Total: 5.99 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -3.76 Total: -19.58 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 0.49 Total: -32.46 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.29 Total: -19.01 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.86 Total: 17.19 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.01 -9.20 -42.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491998993.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.270 kcal (2) G-P(sol) polarization free energy of solvation -33.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds