Wall clock time and date at job start Wed Apr 1 2020 02:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99377 * 2 1 4 4 H 1.48500 * 109.46920 * 269.99676 * 3 2 1 5 5 H 1.48500 * 109.47573 * 30.00131 * 3 2 1 6 6 H 1.48507 * 109.46706 * 150.00146 * 3 2 1 7 7 C 1.38717 * 120.00143 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00100 * 0.02562 * 7 2 1 9 9 O 1.34781 * 119.99814 * 180.02562 * 7 2 1 10 10 C 1.35568 * 116.99906 * 185.05740 * 9 7 2 11 11 C 1.39169 * 119.89913 * 354.37454 * 10 9 7 12 12 C 1.37607 * 120.10372 * 179.97438 * 11 10 9 13 13 C 1.40023 * 119.89459 * 0.02562 * 12 11 10 14 14 C 1.46960 * 120.10013 * 179.97438 * 13 12 11 15 15 C 1.35020 * 120.00114 * 136.90480 * 14 13 12 16 16 C 1.46251 * 119.99746 * 348.50565 * 15 14 13 17 17 O 1.21719 * 120.00369 * 353.22329 * 16 15 14 18 18 N 1.34778 * 120.00051 * 173.22611 * 16 15 14 19 19 C 1.46499 * 120.00211 * 180.02562 * 18 16 15 20 20 H 1.09005 * 112.87847 * 23.69542 * 19 18 16 21 21 C 1.53907 * 113.64663 * 252.28185 * 19 18 16 22 22 C 1.53319 * 86.50507 * 219.30055 * 21 19 18 23 23 H 1.09004 * 111.13770 * 273.98550 * 22 21 19 24 24 O 1.40548 * 115.45726 * 145.78158 * 22 21 19 25 25 C 1.41559 * 119.50403 * 292.06264 * 24 22 21 26 26 C 1.52803 * 110.90148 * 312.25398 * 25 24 22 27 27 C 1.53186 * 108.60748 * 61.15977 * 26 25 24 28 28 C 1.52912 * 87.55109 * 26.42598 * 22 21 19 29 29 H 1.08997 * 114.72018 * 218.42708 * 28 22 21 30 30 C 1.40029 * 119.79768 * 0.25744 * 13 12 11 31 31 C 1.37592 * 119.89722 * 359.46284 * 30 13 12 32 32 H 0.97001 * 120.00334 * 359.97438 * 1 2 3 33 33 H 1.07995 * 119.95253 * 359.96789 * 11 10 9 34 34 H 1.07998 * 120.05350 * 179.97438 * 12 11 10 35 35 H 1.07999 * 119.99757 * 316.90429 * 14 13 12 36 36 H 1.08001 * 119.99868 * 168.78506 * 15 14 13 37 37 H 0.96996 * 119.99744 * 0.02562 * 18 16 15 38 38 H 1.08999 * 113.70846 * 333.69956 * 21 19 18 39 39 H 1.09001 * 113.70767 * 104.89990 * 21 19 18 40 40 H 1.09002 * 109.19735 * 191.89186 * 25 24 22 41 41 H 1.09002 * 109.19631 * 72.61746 * 25 24 22 42 42 H 1.08999 * 109.60820 * 301.42873 * 26 25 24 43 43 H 1.08994 * 109.76396 * 180.98302 * 26 25 24 44 44 H 1.09000 * 109.58431 * 179.78402 * 27 26 25 45 45 H 1.09001 * 109.58833 * 59.35994 * 27 26 25 46 46 H 1.08001 * 120.04490 * 179.72487 * 30 13 12 47 47 H 1.08001 * 119.95225 * 180.27126 * 31 30 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2489 1.6178 0.0000 4 1 2.4964 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0087 -1.2013 0.0005 8 1 1.4688 -2.1366 0.0005 9 8 3.3565 -1.2012 0.0011 10 6 3.9721 -2.4044 -0.1049 11 6 3.2173 -3.5736 -0.0897 12 6 3.8377 -4.7971 -0.1975 13 6 5.2307 -4.8646 -0.3221 14 6 5.8980 -6.1690 -0.4370 15 6 6.8922 -6.3420 -1.3341 16 6 7.1386 -5.3266 -2.3574 17 8 6.3739 -4.3876 -2.4797 18 7 8.2124 -5.4307 -3.1652 19 6 8.4596 -4.4133 -4.1900 20 1 7.9937 -3.4557 -3.9575 21 6 8.1874 -4.9024 -5.6237 22 6 9.4335 -4.1073 -6.0311 23 1 9.1852 -3.0662 -6.2377 24 8 10.1964 -4.6697 -7.0689 25 6 10.8966 -5.8791 -6.8429 26 6 11.6796 -5.8190 -5.5321 27 6 10.6901 -5.6150 -4.3806 28 6 9.9414 -4.2967 -4.6013 29 1 10.4563 -3.4322 -4.1823 30 6 5.9865 -3.6859 -0.3310 31 6 5.3570 -2.4667 -0.2285 32 1 -0.4851 0.8400 0.0004 33 1 2.1430 -3.5206 0.0070 34 1 3.2512 -5.7039 -0.1852 35 1 5.5932 -6.9891 0.1961 36 1 7.5026 -7.2323 -1.2986 37 1 8.8216 -6.1792 -3.0681 38 1 8.2955 -5.9800 -5.7471 39 1 7.2619 -4.5158 -6.0504 40 1 11.5895 -6.0514 -7.6665 41 1 10.1839 -6.7026 -6.7971 42 1 12.3815 -4.9857 -5.5633 43 1 12.2247 -6.7513 -5.3853 44 1 11.2323 -5.5736 -3.4360 45 1 9.9784 -6.4403 -4.3599 46 1 7.0616 -3.7336 -0.4225 47 1 5.9387 -1.5569 -0.2396 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491998993.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:47 Heat of formation + Delta-G solvation = -47.351972 kcal Electronic energy + Delta-G solvation = -29359.625762 eV Core-core repulsion = 25281.055852 eV Total energy + Delta-G solvation = -4078.569910 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.162 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.14707 -41.02225 -40.24933 -38.33457 -37.23906 -34.65662 -34.23229 -34.11063 -33.88682 -31.86225 -29.84295 -28.48297 -27.41325 -26.27204 -24.95353 -24.02379 -23.59727 -22.83111 -22.15953 -20.56885 -19.72504 -19.33223 -19.13273 -18.26850 -17.96234 -17.25476 -16.69349 -16.44376 -16.29102 -16.09374 -15.75318 -15.67801 -15.58255 -15.24604 -15.09986 -14.69179 -14.59301 -14.27240 -14.26370 -14.09963 -13.87930 -13.77020 -13.54565 -13.13214 -12.90383 -12.67145 -12.59073 -12.50975 -12.30048 -12.20156 -11.96420 -11.91072 -11.51289 -11.34454 -11.09087 -10.98073 -10.65431 -10.44663 -10.26144 -9.98150 -9.57965 -8.61693 -8.52810 -6.23778 -0.04633 0.67522 1.08225 1.27720 1.34116 1.49094 2.25845 2.29770 2.44799 2.79001 2.82143 3.03937 3.22216 3.29655 3.52096 3.67541 3.75867 3.95287 3.98287 4.03855 4.09762 4.13111 4.16194 4.27357 4.48406 4.52311 4.56418 4.57215 4.60730 4.64828 4.76972 4.81135 4.90781 4.92309 4.94526 5.02635 5.13336 5.17562 5.20589 5.26904 5.33777 5.40687 5.44425 5.58881 5.67187 5.77260 5.82214 5.89634 6.25575 6.55539 6.70361 6.81297 7.44099 7.57086 8.58791 Molecular weight = 343.16amu Principal moments of inertia in cm(-1) A = 0.015157 B = 0.002382 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.937113 B =11752.494785 C =12959.271500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.011 3.989 3 Si 0.970 3.030 4 H -0.268 1.268 5 H -0.262 1.262 6 H -0.264 1.264 7 C -0.401 4.401 8 H 0.082 0.918 9 O -0.244 6.244 10 C 0.133 3.867 11 C -0.253 4.253 12 C -0.053 4.053 13 C -0.151 4.151 14 C 0.002 3.998 15 C -0.228 4.228 16 C 0.527 3.473 17 O -0.566 6.566 18 N -0.703 5.703 19 C 0.125 3.875 20 H 0.091 0.909 21 C -0.182 4.182 22 C 0.091 3.909 23 H 0.119 0.881 24 O -0.391 6.391 25 C 0.058 3.942 26 C -0.151 4.151 27 C -0.109 4.109 28 C -0.134 4.134 29 H 0.095 0.905 30 C 0.012 3.988 31 C -0.209 4.209 32 H 0.286 0.714 33 H 0.109 0.891 34 H 0.142 0.858 35 H 0.168 0.832 36 H 0.174 0.826 37 H 0.414 0.586 38 H 0.093 0.907 39 H 0.060 0.940 40 H 0.105 0.895 41 H 0.049 0.951 42 H 0.070 0.930 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.126 0.874 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.510 -18.392 -8.931 34.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.188 4.188 3 Si 0.792 3.208 4 H -0.193 1.193 5 H -0.186 1.186 6 H -0.189 1.189 7 C -0.477 4.477 8 H 0.099 0.901 9 O -0.151 6.151 10 C 0.083 3.917 11 C -0.273 4.273 12 C -0.071 4.071 13 C -0.151 4.151 14 C -0.017 4.017 15 C -0.249 4.249 16 C 0.318 3.682 17 O -0.446 6.446 18 N -0.356 5.356 19 C 0.019 3.981 20 H 0.109 0.891 21 C -0.222 4.222 22 C 0.032 3.968 23 H 0.136 0.864 24 O -0.310 6.310 25 C -0.017 4.017 26 C -0.188 4.188 27 C -0.146 4.146 28 C -0.154 4.154 29 H 0.114 0.886 30 C -0.006 4.006 31 C -0.228 4.228 32 H 0.095 0.905 33 H 0.126 0.874 34 H 0.160 0.840 35 H 0.185 0.815 36 H 0.192 0.808 37 H 0.253 0.747 38 H 0.112 0.888 39 H 0.079 0.921 40 H 0.123 0.877 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.118 0.882 44 H 0.107 0.893 45 H 0.094 0.906 46 H 0.144 0.856 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 26.887 -17.313 -9.169 33.268 hybrid contribution -0.591 0.572 0.116 0.830 sum 26.296 -16.742 -9.053 32.461 Atomic orbital electron populations 1.69703 1.06824 1.29653 1.49931 1.25292 0.95927 1.02106 0.95483 0.85234 0.78820 0.77496 0.79231 1.19294 1.18645 1.18884 1.20753 0.78048 0.96219 1.52671 0.90082 1.83448 1.21396 1.27719 1.82567 1.19748 0.92895 0.85093 0.93923 1.21115 1.00014 0.93208 1.12922 1.21161 0.94167 0.96351 0.95453 1.18924 0.92833 0.94226 1.09158 1.22577 0.90727 0.93898 0.94531 1.23076 1.02884 1.01584 0.97315 1.19133 0.80735 0.85886 0.82490 1.90997 1.47062 1.34941 1.71649 1.45840 1.27071 1.27831 1.34863 1.22244 0.96475 0.92826 0.86559 0.89072 1.24076 0.99649 1.01962 0.96464 1.22681 0.89998 0.97651 0.86496 0.86380 1.86706 1.64334 1.41128 1.38793 1.22513 0.94832 0.85501 0.98899 1.22057 0.98211 1.04160 0.94399 1.21489 0.98175 0.94880 1.00092 1.23425 0.94767 1.00992 0.96180 0.88634 1.20736 0.98707 0.90243 0.90946 1.20243 0.90691 0.99354 1.12559 0.90471 0.87357 0.84004 0.81511 0.80821 0.74667 0.88810 0.92119 0.87707 0.93291 0.91121 0.88226 0.89269 0.90631 0.85605 0.86505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.71 13.96 21.62 0.30 -56.41 16 2 C 0.01 0.63 5.49 84.86 0.47 1.10 16 3 Si 0.97 47.56 28.62 68.60 1.96 49.52 16 4 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 5 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.26 -13.01 7.11 99.48 0.71 -12.31 16 7 C -0.40 -24.90 9.94 67.93 0.68 -24.23 16 8 H 0.08 5.26 5.41 -2.91 -0.02 5.24 16 9 O -0.24 -14.27 8.57 -20.24 -0.17 -14.45 16 10 C 0.13 6.86 6.66 22.72 0.15 7.01 16 11 C -0.25 -12.14 9.14 22.34 0.20 -11.94 16 12 C -0.05 -2.01 9.79 22.55 0.22 -1.79 16 13 C -0.15 -4.99 4.54 -20.13 -0.09 -5.09 16 14 C 0.00 0.04 9.80 23.82 0.23 0.27 16 15 C -0.23 -4.00 9.90 23.61 0.23 -3.77 16 16 C 0.53 12.67 6.76 86.32 0.58 13.25 16 17 O -0.57 -20.13 11.78 -4.41 -0.05 -20.18 16 18 N -0.70 -11.67 5.16 -443.55 -2.29 -13.96 16 19 C 0.13 2.32 4.08 45.70 0.19 2.50 16 20 H 0.09 2.28 7.46 -2.38 -0.02 2.26 16 21 C -0.18 -3.28 7.23 31.01 0.22 -3.06 16 22 C 0.09 1.47 4.64 30.66 0.14 1.61 16 23 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 24 O -0.39 -6.70 10.37 -144.84 -1.50 -8.20 16 25 C 0.06 0.61 6.67 71.92 0.48 1.09 16 26 C -0.15 -1.08 6.11 30.59 0.19 -0.89 16 27 C -0.11 -0.86 4.70 30.73 0.14 -0.71 16 28 C -0.13 -1.76 4.34 -10.34 -0.04 -1.80 16 29 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 30 C 0.01 0.43 6.60 22.55 0.15 0.58 16 31 C -0.21 -9.26 9.97 22.34 0.22 -9.03 16 32 H 0.29 16.07 8.31 -92.71 -0.77 15.30 16 33 H 0.11 5.61 5.62 -2.91 -0.02 5.59 16 34 H 0.14 4.30 8.06 -2.91 -0.02 4.27 16 35 H 0.17 2.26 8.06 -2.91 -0.02 2.23 16 36 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 37 H 0.41 3.89 6.30 -92.71 -0.58 3.31 16 38 H 0.09 1.50 7.17 -2.39 -0.02 1.48 16 39 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.05 0.48 7.73 -2.39 -0.02 0.46 16 42 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.08 0.50 5.71 -2.39 -0.01 0.48 16 46 H 0.13 3.97 7.01 -2.91 -0.02 3.95 16 47 H 0.12 4.92 8.06 -2.91 -0.02 4.90 16 Total: -1.00 -79.62 376.10 3.03 -76.58 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 0.42 Total: 21.97 kcal Atomic # 6 Polarization: -39.24 SS G_CDS: 4.37 Total: -34.87 kcal Atomic # 7 Polarization: -68.38 SS G_CDS: -1.99 Total: -70.37 kcal Atomic # 8 Polarization: -41.10 SS G_CDS: -1.73 Total: -42.83 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 1.96 Total: 49.52 kcal Total: -79.62 3.03 -76.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491998993.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.232 kcal (2) G-P(sol) polarization free energy of solvation -79.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds