Wall clock time and date at job start Wed Apr 1 2020 02:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.47364 * 179.72223 * 3 2 1 5 5 H 1.48508 * 109.46883 * 299.72346 * 3 2 1 6 6 H 1.48497 * 109.46870 * 59.72156 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 N 1.46500 * 109.46944 * 180.02562 * 9 7 2 11 11 C 1.46503 * 120.00173 * 275.00148 * 10 9 7 12 12 C 1.52996 * 109.47258 * 84.99735 * 11 10 9 13 13 C 1.52990 * 117.49938 * 243.62396 * 12 11 10 14 14 C 1.52993 * 117.49799 * 175.00048 * 12 11 10 15 15 S 1.65608 * 119.99951 * 95.00129 * 10 9 7 16 16 O 1.42107 * 104.27334 * 206.07213 * 15 10 9 17 17 O 1.42094 * 104.27624 * 333.92562 * 15 10 9 18 18 C 1.81398 * 104.45207 * 90.00198 * 15 10 9 19 19 C 1.52998 * 109.46975 * 180.02562 * 18 15 10 20 20 H 1.08995 * 110.33209 * 307.24884 * 19 18 15 21 21 C 1.54478 * 110.37113 * 184.99754 * 19 18 15 22 22 C 1.54508 * 104.06382 * 217.18930 * 21 19 18 23 23 C 1.54478 * 104.06169 * 0.02562 * 22 21 19 24 24 H 1.09002 * 110.36524 * 265.14580 * 23 22 21 25 25 C 1.52997 * 110.37028 * 142.92321 * 23 22 21 26 26 C 1.53006 * 117.49587 * 248.74053 * 25 23 22 27 27 C 1.52999 * 117.49592 * 180.08609 * 25 23 22 28 28 O 1.44424 * 110.37142 * 69.61819 * 19 18 15 29 29 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 31 31 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 32 32 H 1.09006 * 109.47168 * 205.00140 * 11 10 9 33 33 H 1.09001 * 109.46585 * 324.99721 * 11 10 9 34 34 H 1.09007 * 115.54767 * 29.33392 * 12 11 10 35 35 H 1.09007 * 117.50117 * 0.02562 * 13 12 11 36 36 H 1.09003 * 117.49951 * 145.01850 * 13 12 11 37 37 H 1.09008 * 117.49817 * 214.97759 * 14 12 11 38 38 H 1.08998 * 117.50348 * 0.02562 * 14 12 11 39 39 H 1.09007 * 109.46864 * 300.00011 * 18 15 10 40 40 H 1.08995 * 109.47292 * 59.99700 * 18 15 10 41 41 H 1.09005 * 110.50909 * 335.83715 * 21 19 18 42 42 H 1.08996 * 110.51429 * 98.40447 * 21 19 18 43 43 H 1.09007 * 110.50919 * 118.64497 * 22 21 19 44 44 H 1.08998 * 110.50804 * 241.21623 * 22 21 19 45 45 H 1.09000 * 115.55309 * 34.41432 * 25 23 22 46 46 H 1.08999 * 117.49687 * 0.02562 * 26 25 23 47 47 H 1.08996 * 117.49597 * 145.02057 * 26 25 23 48 48 H 1.09002 * 117.50174 * 214.97592 * 27 25 23 49 49 H 1.09003 * 117.50256 * 359.96941 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0068 5 1 1.8957 2.3934 -1.2159 6 1 1.8855 2.3993 1.2091 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 7 2.2027 -3.6127 0.0131 11 6 2.7686 -4.1010 -1.2470 12 6 3.9868 -3.2543 -1.6210 13 6 3.9076 -2.4332 -2.9095 14 6 4.7924 -3.6800 -2.8501 15 16 2.6392 -4.3196 1.4457 16 8 3.9295 -4.8581 1.1919 17 8 2.4498 -3.2964 2.4133 18 6 1.4291 -5.6503 1.6811 19 6 1.7291 -6.3871 2.9880 20 1 2.7708 -6.7071 3.0118 21 6 0.7893 -7.6026 3.1480 22 6 0.4790 -7.6407 4.6612 23 6 1.2676 -6.4433 5.2362 24 1 2.2387 -6.7714 5.6069 25 6 0.4714 -5.7694 6.3555 26 6 -0.0770 -4.3666 6.0865 27 6 1.1042 -4.5569 7.0412 28 8 1.4346 -5.5413 4.1210 29 1 -0.4851 -0.8400 -0.0004 30 1 0.6205 -2.5547 0.8933 31 1 0.6280 -2.5591 -0.8867 32 1 3.0713 -5.1417 -1.1302 33 1 2.0188 -4.0269 -2.0347 34 1 4.5361 -2.8250 -0.7831 35 1 2.9875 -2.4958 -3.4905 36 1 4.4048 -1.4632 -2.9194 37 1 5.8717 -3.5302 -2.8210 38 1 4.4543 -4.5629 -3.3925 39 1 0.4262 -5.2256 1.7258 40 1 1.4908 -6.3493 0.8471 41 1 -0.1257 -7.4560 2.5740 42 1 1.2921 -8.5179 2.8360 43 1 -0.5894 -7.5129 4.8353 44 1 0.8272 -8.5762 5.0989 45 1 -0.1328 -6.4367 6.9701 46 1 0.1291 -3.9241 5.1119 47 1 -1.0419 -4.1110 6.5243 48 1 0.9160 -4.4262 8.1069 49 1 2.0879 -4.2395 6.6953 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414215764.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:57 Heat of formation + Delta-G solvation = -66.262212 kcal Electronic energy + Delta-G solvation = -29669.500525 eV Core-core repulsion = 25725.554557 eV Total energy + Delta-G solvation = -3943.945968 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.165 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.00126 -37.49754 -36.65651 -36.46336 -35.25274 -34.79091 -32.50279 -32.43366 -31.71029 -27.53438 -26.88902 -25.07994 -22.99013 -22.43054 -22.21825 -21.88266 -21.33531 -20.43385 -20.28316 -18.30518 -17.23144 -16.93833 -16.64602 -16.14860 -15.95535 -15.55145 -15.46231 -14.90166 -14.67571 -14.02590 -13.96757 -13.75197 -13.48667 -13.38276 -12.71900 -12.65179 -12.57208 -12.29017 -12.12324 -11.85812 -11.81385 -11.49356 -11.40281 -11.35308 -11.32706 -11.13891 -11.08079 -11.01811 -10.93195 -10.61134 -10.51612 -10.36346 -10.19276 -10.10740 -10.06229 -9.86697 -9.76738 -9.37095 -9.20790 -8.29282 -7.90596 -6.29462 -3.98857 0.77006 3.28641 3.47113 3.49840 3.54956 3.68437 3.78370 4.19852 4.30861 4.33695 4.52005 4.57929 4.61079 4.63873 4.75909 4.88640 4.93888 5.04858 5.05941 5.15194 5.24895 5.28685 5.30133 5.34214 5.45624 5.45997 5.54395 5.55284 5.63084 5.73003 5.73450 5.82855 5.84976 5.85952 5.91383 5.98161 6.16378 6.16931 6.36279 6.42034 6.45659 6.56638 6.68528 6.80467 6.93296 7.20849 7.47459 8.10725 8.57944 8.90254 9.68001 11.08563 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.011292 B = 0.004081 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.074224 B = 6859.928405 C = 8561.858018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.019 3.981 3 Si 1.071 2.929 4 H -0.289 1.289 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.589 4.589 8 H 0.057 0.943 9 C 0.247 3.753 10 N -0.981 5.981 11 C 0.167 3.833 12 C -0.143 4.143 13 C -0.164 4.164 14 C -0.192 4.192 15 S 2.606 3.394 16 O -0.970 6.970 17 O -0.919 6.919 18 C -0.643 4.643 19 C 0.086 3.914 20 H 0.081 0.919 21 C -0.142 4.142 22 C -0.147 4.147 23 C 0.101 3.899 24 H 0.075 0.925 25 C -0.162 4.162 26 C -0.164 4.164 27 C -0.176 4.176 28 O -0.353 6.353 29 H 0.266 0.734 30 H 0.027 0.973 31 H 0.023 0.977 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.113 0.887 46 H 0.113 0.887 47 H 0.090 0.910 48 H 0.092 0.908 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.042 -17.383 5.130 18.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.184 4.184 3 Si 0.900 3.100 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.213 1.213 7 C -0.628 4.628 8 H 0.076 0.924 9 C 0.125 3.875 10 N -0.819 5.819 11 C 0.040 3.960 12 C -0.163 4.163 13 C -0.201 4.201 14 C -0.230 4.230 15 S 2.696 3.304 16 O -0.960 6.960 17 O -0.909 6.909 18 C -0.768 4.768 19 C 0.027 3.973 20 H 0.099 0.901 21 C -0.181 4.181 22 C -0.185 4.185 23 C 0.044 3.956 24 H 0.092 0.908 25 C -0.180 4.180 26 C -0.201 4.201 27 C -0.213 4.213 28 O -0.272 6.272 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.124 0.876 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.157 0.843 40 H 0.154 0.846 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.131 0.869 46 H 0.131 0.869 47 H 0.109 0.891 48 H 0.110 0.890 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.504 -15.256 5.679 16.348 hybrid contribution -0.450 -2.222 -0.284 2.285 sum 1.054 -17.478 5.395 18.322 Atomic orbital electron populations 1.70761 1.06822 1.30225 1.47557 1.25699 0.96408 1.02448 0.93845 0.83514 0.74652 0.75001 0.76821 1.21510 1.21507 1.21313 1.22284 0.95011 0.91241 1.54285 0.92430 1.19140 0.87496 0.84121 0.96749 1.57425 1.59264 1.45054 1.20112 1.20597 0.93522 0.95205 0.86651 1.22610 0.99013 1.02355 0.92340 1.22860 1.01115 0.95054 1.01036 1.22961 0.97841 0.99155 1.03039 1.05244 0.75453 0.75463 0.74242 1.93536 1.35619 1.81861 1.84988 1.93645 1.85893 1.51674 1.59712 1.30912 1.21888 1.20604 1.03427 1.22482 0.99207 0.90376 0.85236 0.90145 1.22942 1.00419 0.97894 0.96808 1.22961 1.01898 0.98593 0.95032 1.22458 0.97516 0.88574 0.87098 0.90759 1.22298 1.04074 0.91710 0.99915 1.22965 0.97466 0.97362 1.02270 1.22972 0.98956 1.01362 0.97977 1.89313 1.91618 1.29218 1.17096 0.92426 0.95551 0.95949 0.91431 0.90959 0.87649 0.89056 0.89208 0.89389 0.89397 0.84298 0.84572 0.90030 0.90148 0.90174 0.90351 0.86908 0.86863 0.89121 0.88990 0.88351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.53 13.65 55.43 0.76 -26.77 16 2 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 3 Si 1.07 26.17 29.90 -169.99 -5.08 21.08 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.59 -16.45 8.96 -34.44 -0.31 -16.76 16 8 H 0.06 1.65 7.15 -52.49 -0.38 1.28 16 9 C 0.25 6.04 4.35 -5.20 -0.02 6.01 16 10 N -0.98 -19.95 2.73 -115.66 -0.32 -20.27 16 11 C 0.17 2.91 5.56 -4.04 -0.02 2.88 16 12 C -0.14 -2.63 5.16 -90.63 -0.47 -3.10 16 13 C -0.16 -2.75 10.18 -26.74 -0.27 -3.02 16 14 C -0.19 -2.82 10.25 -26.74 -0.27 -3.10 16 15 S 2.61 50.82 5.24 -107.50 -0.56 50.26 16 16 O -0.97 -19.85 16.99 -57.54 -0.98 -20.82 16 17 O -0.92 -22.26 16.79 -57.62 -0.97 -23.22 16 18 C -0.64 -9.00 5.79 37.16 0.22 -8.79 16 19 C 0.09 1.14 3.24 -25.96 -0.08 1.05 16 20 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 21 C -0.14 -1.38 6.63 -25.16 -0.17 -1.55 16 22 C -0.15 -1.33 6.62 -25.16 -0.17 -1.50 16 23 C 0.10 1.17 3.64 -25.96 -0.09 1.08 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 25 C -0.16 -1.79 5.60 -90.62 -0.51 -2.30 16 26 C -0.16 -2.14 9.90 -26.69 -0.26 -2.41 16 27 C -0.18 -2.08 10.25 -26.70 -0.27 -2.36 16 28 O -0.35 -5.42 9.20 -35.23 -0.32 -5.74 16 29 H 0.27 7.81 7.22 -40.82 -0.29 7.51 16 30 H 0.03 0.68 7.47 -51.93 -0.39 0.29 16 31 H 0.02 0.55 7.87 -51.93 -0.41 0.14 16 32 H 0.07 0.99 7.61 -51.93 -0.40 0.59 16 33 H 0.07 1.16 7.74 -51.93 -0.40 0.76 16 34 H 0.11 2.22 7.91 -51.92 -0.41 1.81 16 35 H 0.09 1.48 8.03 -51.92 -0.42 1.06 16 36 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 37 H 0.09 1.20 8.14 -51.92 -0.42 0.78 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.14 1.92 8.14 -51.92 -0.42 1.50 16 40 H 0.14 1.45 8.14 -51.93 -0.42 1.02 16 41 H 0.08 0.77 7.87 -51.93 -0.41 0.36 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.08 0.70 7.87 -51.93 -0.41 0.29 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.11 0.99 8.13 -51.93 -0.42 0.57 16 46 H 0.11 1.85 7.07 -51.93 -0.37 1.48 16 47 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 407.05 15.07 6.13 6.13 Total: -1.00 -34.94 407.05 -12.71 -47.66 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -8.57 Total: 5.09 kcal Atomic # 6 Polarization: -30.58 SS G_CDS: -2.81 Total: -33.38 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 0.44 Total: -47.05 kcal Atomic # 8 Polarization: -47.52 SS G_CDS: -2.27 Total: -49.79 kcal Atomic # 14 Polarization: 26.17 SS G_CDS: -5.08 Total: 21.08 kcal Atomic # 16 Polarization: 50.82 SS G_CDS: -0.56 Total: 50.26 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.94 -12.71 -47.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414215764.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.604 kcal (2) G-P(sol) polarization free energy of solvation -34.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds