Wall clock time and date at job start Wed Apr 1 2020 02:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.47364 * 179.72223 * 3 2 1 5 5 H 1.48508 * 109.46883 * 299.72346 * 3 2 1 6 6 H 1.48497 * 109.46870 * 59.72156 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 N 1.46500 * 109.46944 * 180.02562 * 9 7 2 11 11 C 1.46503 * 120.00173 * 275.00148 * 10 9 7 12 12 C 1.52996 * 109.47258 * 84.99735 * 11 10 9 13 13 C 1.52990 * 117.49938 * 243.62396 * 12 11 10 14 14 C 1.52993 * 117.49799 * 175.00048 * 12 11 10 15 15 S 1.65608 * 119.99951 * 95.00129 * 10 9 7 16 16 O 1.42107 * 104.27334 * 206.07213 * 15 10 9 17 17 O 1.42094 * 104.27624 * 333.92562 * 15 10 9 18 18 C 1.81398 * 104.45207 * 90.00198 * 15 10 9 19 19 C 1.52998 * 109.46975 * 180.02562 * 18 15 10 20 20 H 1.08995 * 110.33209 * 307.24884 * 19 18 15 21 21 C 1.54478 * 110.37113 * 184.99754 * 19 18 15 22 22 C 1.54508 * 104.06382 * 217.18930 * 21 19 18 23 23 C 1.54478 * 104.06169 * 0.02562 * 22 21 19 24 24 H 1.09002 * 110.36524 * 265.14580 * 23 22 21 25 25 C 1.52997 * 110.37028 * 142.92321 * 23 22 21 26 26 C 1.53006 * 117.49587 * 248.74053 * 25 23 22 27 27 C 1.52999 * 117.49592 * 180.08609 * 25 23 22 28 28 O 1.44424 * 110.37142 * 69.61819 * 19 18 15 29 29 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 31 31 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 32 32 H 1.09006 * 109.47168 * 205.00140 * 11 10 9 33 33 H 1.09001 * 109.46585 * 324.99721 * 11 10 9 34 34 H 1.09007 * 115.54767 * 29.33392 * 12 11 10 35 35 H 1.09007 * 117.50117 * 0.02562 * 13 12 11 36 36 H 1.09003 * 117.49951 * 145.01850 * 13 12 11 37 37 H 1.09008 * 117.49817 * 214.97759 * 14 12 11 38 38 H 1.08998 * 117.50348 * 0.02562 * 14 12 11 39 39 H 1.09007 * 109.46864 * 300.00011 * 18 15 10 40 40 H 1.08995 * 109.47292 * 59.99700 * 18 15 10 41 41 H 1.09005 * 110.50909 * 335.83715 * 21 19 18 42 42 H 1.08996 * 110.51429 * 98.40447 * 21 19 18 43 43 H 1.09007 * 110.50919 * 118.64497 * 22 21 19 44 44 H 1.08998 * 110.50804 * 241.21623 * 22 21 19 45 45 H 1.09000 * 115.55309 * 34.41432 * 25 23 22 46 46 H 1.08999 * 117.49687 * 0.02562 * 26 25 23 47 47 H 1.08996 * 117.49597 * 145.02057 * 26 25 23 48 48 H 1.09002 * 117.50174 * 214.97592 * 27 25 23 49 49 H 1.09003 * 117.50256 * 359.96941 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0068 5 1 1.8957 2.3934 -1.2159 6 1 1.8855 2.3993 1.2091 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 7 2.2027 -3.6127 0.0131 11 6 2.7686 -4.1010 -1.2470 12 6 3.9868 -3.2543 -1.6210 13 6 3.9076 -2.4332 -2.9095 14 6 4.7924 -3.6800 -2.8501 15 16 2.6392 -4.3196 1.4457 16 8 3.9295 -4.8581 1.1919 17 8 2.4498 -3.2964 2.4133 18 6 1.4291 -5.6503 1.6811 19 6 1.7291 -6.3871 2.9880 20 1 2.7708 -6.7071 3.0118 21 6 0.7893 -7.6026 3.1480 22 6 0.4790 -7.6407 4.6612 23 6 1.2676 -6.4433 5.2362 24 1 2.2387 -6.7714 5.6069 25 6 0.4714 -5.7694 6.3555 26 6 -0.0770 -4.3666 6.0865 27 6 1.1042 -4.5569 7.0412 28 8 1.4346 -5.5413 4.1210 29 1 -0.4851 -0.8400 -0.0004 30 1 0.6205 -2.5547 0.8933 31 1 0.6280 -2.5591 -0.8867 32 1 3.0713 -5.1417 -1.1302 33 1 2.0188 -4.0269 -2.0347 34 1 4.5361 -2.8250 -0.7831 35 1 2.9875 -2.4958 -3.4905 36 1 4.4048 -1.4632 -2.9194 37 1 5.8717 -3.5302 -2.8210 38 1 4.4543 -4.5629 -3.3925 39 1 0.4262 -5.2256 1.7258 40 1 1.4908 -6.3493 0.8471 41 1 -0.1257 -7.4560 2.5740 42 1 1.2921 -8.5179 2.8360 43 1 -0.5894 -7.5129 4.8353 44 1 0.8272 -8.5762 5.0989 45 1 -0.1328 -6.4367 6.9701 46 1 0.1291 -3.9241 5.1119 47 1 -1.0419 -4.1110 6.5243 48 1 0.9160 -4.4262 8.1069 49 1 2.0879 -4.2395 6.6953 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414215764.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:56 Heat of formation + Delta-G solvation = -89.133547 kcal Electronic energy + Delta-G solvation = -29670.492301 eV Core-core repulsion = 25725.554557 eV Total energy + Delta-G solvation = -3944.937743 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.165 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.92499 -38.92671 -38.11835 -37.61099 -36.90834 -36.48441 -34.49886 -33.43840 -32.66524 -29.32950 -27.88263 -26.82215 -24.50128 -23.86386 -23.19466 -23.14427 -22.22182 -21.70202 -21.33372 -19.89013 -19.12254 -18.48886 -17.89438 -17.33325 -17.22126 -16.74990 -16.72377 -16.16289 -15.79666 -15.71551 -15.49510 -15.16976 -14.77546 -14.48394 -14.44110 -14.13323 -13.83540 -13.55930 -13.19472 -13.16700 -13.08293 -13.02917 -12.89428 -12.78077 -12.70121 -12.51526 -12.39301 -12.31779 -12.29254 -12.25833 -12.00581 -11.67999 -11.53586 -11.31107 -11.21358 -11.11608 -11.06601 -10.71300 -10.69940 -10.49790 -9.70454 -8.58033 -6.28011 -0.73074 1.47786 1.57272 1.72332 1.76734 2.53121 2.55208 2.85181 2.92868 3.01704 3.17990 3.23765 3.35058 3.50490 3.74591 3.77961 3.88700 3.91432 3.96723 3.98238 4.09420 4.16481 4.20063 4.22844 4.25271 4.47441 4.48850 4.51509 4.57400 4.74814 4.77276 4.78575 4.82010 4.83804 4.91576 4.95031 4.99050 5.07317 5.09646 5.14270 5.22725 5.30239 5.32905 5.33285 5.37353 5.78156 5.81358 5.95977 6.31577 6.63312 7.44341 8.79892 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.011292 B = 0.004081 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.074224 B = 6859.928405 C = 8561.858018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.029 4.029 3 Si 1.106 2.894 4 H -0.283 1.283 5 H -0.270 1.270 6 H -0.284 1.284 7 C -0.594 4.594 8 H 0.040 0.960 9 C 0.260 3.740 10 N -0.987 5.987 11 C 0.159 3.841 12 C -0.179 4.179 13 C -0.175 4.175 14 C -0.154 4.154 15 S 2.595 3.405 16 O -0.988 6.988 17 O -0.985 6.985 18 C -0.607 4.607 19 C 0.068 3.932 20 H 0.087 0.913 21 C -0.134 4.134 22 C -0.139 4.139 23 C 0.084 3.916 24 H 0.082 0.918 25 C -0.141 4.141 26 C -0.186 4.186 27 C -0.181 4.181 28 O -0.393 6.393 29 H 0.259 0.741 30 H 0.008 0.992 31 H 0.026 0.974 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.120 0.880 39 H 0.143 0.857 40 H 0.182 0.818 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.085 0.915 44 H 0.108 0.892 45 H 0.146 0.854 46 H 0.070 0.930 47 H 0.106 0.894 48 H 0.116 0.884 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.606 -20.895 4.674 21.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.227 4.227 3 Si 0.930 3.070 4 H -0.209 1.209 5 H -0.195 1.195 6 H -0.210 1.210 7 C -0.633 4.633 8 H 0.058 0.942 9 C 0.136 3.864 10 N -0.824 5.824 11 C 0.034 3.966 12 C -0.199 4.199 13 C -0.212 4.212 14 C -0.191 4.191 15 S 2.693 3.307 16 O -0.979 6.979 17 O -0.975 6.975 18 C -0.738 4.738 19 C 0.009 3.991 20 H 0.104 0.896 21 C -0.173 4.173 22 C -0.177 4.177 23 C 0.027 3.973 24 H 0.099 0.901 25 C -0.159 4.159 26 C -0.223 4.223 27 C -0.218 4.218 28 O -0.313 6.313 29 H 0.068 0.932 30 H 0.026 0.974 31 H 0.043 0.957 32 H 0.118 0.882 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.116 0.884 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.138 0.862 39 H 0.161 0.839 40 H 0.200 0.800 41 H 0.106 0.894 42 H 0.128 0.872 43 H 0.104 0.896 44 H 0.126 0.874 45 H 0.164 0.836 46 H 0.089 0.911 47 H 0.125 0.875 48 H 0.134 0.866 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.129 -18.734 5.189 19.472 hybrid contribution -0.265 -1.225 -0.090 1.257 sum 0.864 -19.959 5.099 20.618 Atomic orbital electron populations 1.70857 1.07422 1.29868 1.49572 1.26907 0.96639 1.05710 0.93436 0.83063 0.74013 0.72303 0.77647 1.20857 1.19481 1.20964 1.22559 0.94373 0.93177 1.53219 0.94198 1.18714 0.87642 0.84307 0.95715 1.57252 1.58727 1.44832 1.21551 1.20912 0.93375 0.96542 0.85783 1.22582 1.00604 1.04484 0.92263 1.22901 1.02251 0.95712 1.00340 1.23073 0.97960 0.98774 0.99298 1.05209 0.76250 0.76190 0.73087 1.93497 1.37638 1.81887 1.84830 1.93569 1.86995 1.55529 1.61423 1.30587 1.18660 1.18274 1.06328 1.22833 1.00801 0.91467 0.83981 0.89560 1.22979 0.99917 0.96948 0.97467 1.22973 1.01846 0.98382 0.94449 1.22810 0.98628 0.89302 0.86563 0.90064 1.22515 1.02924 0.91037 0.99443 1.22854 0.98758 0.99898 1.00808 1.23011 0.97272 1.02499 0.99001 1.89326 1.91899 1.31399 1.18725 0.93194 0.97426 0.95660 0.88150 0.89411 0.91730 0.88417 0.90342 0.88371 0.86188 0.83864 0.79991 0.89408 0.87154 0.89621 0.87391 0.83609 0.91098 0.87521 0.86550 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.98 13.65 21.45 0.29 -57.69 16 2 C -0.03 -1.71 5.46 84.66 0.46 -1.25 16 3 Si 1.11 53.97 29.90 68.60 2.05 56.02 16 4 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 5 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 7 C -0.59 -34.66 8.96 25.60 0.23 -34.43 16 8 H 0.04 2.42 7.15 -2.91 -0.02 2.40 16 9 C 0.26 13.21 4.35 85.63 0.37 13.58 16 10 N -0.99 -40.98 2.73 -519.85 -1.42 -42.40 16 11 C 0.16 5.41 5.56 86.38 0.48 5.89 16 12 C -0.18 -6.62 5.16 -10.80 -0.06 -6.68 16 13 C -0.17 -5.83 10.18 30.59 0.31 -5.52 16 14 C -0.15 -4.19 10.25 30.59 0.31 -3.87 16 15 S 2.60 103.98 5.24 -56.49 -0.30 103.68 16 16 O -0.99 -41.08 16.99 -127.65 -2.17 -43.25 16 17 O -0.98 -51.15 16.79 -127.57 -2.14 -53.29 16 18 C -0.61 -15.96 5.79 71.98 0.42 -15.55 16 19 C 0.07 1.68 3.24 31.10 0.10 1.78 16 20 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 21 C -0.13 -2.06 6.63 31.61 0.21 -1.85 16 22 C -0.14 -1.98 6.62 31.61 0.21 -1.77 16 23 C 0.08 1.82 3.64 31.10 0.11 1.93 16 24 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 25 C -0.14 -2.93 5.60 -10.79 -0.06 -2.99 16 26 C -0.19 -5.03 9.90 30.62 0.30 -4.73 16 27 C -0.18 -4.33 10.25 30.62 0.31 -4.02 16 28 O -0.39 -12.14 9.20 -148.98 -1.37 -13.51 16 29 H 0.26 15.77 7.22 -92.71 -0.67 15.10 16 30 H 0.01 0.43 7.47 -2.39 -0.02 0.41 16 31 H 0.03 1.27 7.87 -2.39 -0.02 1.25 16 32 H 0.10 2.69 7.61 -2.38 -0.02 2.67 16 33 H 0.09 2.68 7.74 -2.39 -0.02 2.66 16 34 H 0.06 2.89 7.91 -2.38 -0.02 2.87 16 35 H 0.10 3.09 8.03 -2.38 -0.02 3.07 16 36 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 37 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 38 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.14 3.80 8.14 -2.39 -0.02 3.78 16 40 H 0.18 3.10 8.14 -2.39 -0.02 3.08 16 41 H 0.09 1.27 7.87 -2.38 -0.02 1.25 16 42 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.09 1.15 7.87 -2.38 -0.02 1.13 16 44 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.15 2.04 8.13 -2.39 -0.02 2.02 16 46 H 0.07 2.53 7.07 -2.39 -0.02 2.52 16 47 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 48 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 49 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -82.65 407.05 -0.32 -82.97 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 1.01 Total: 26.94 kcal Atomic # 6 Polarization: -63.19 SS G_CDS: 3.72 Total: -59.47 kcal Atomic # 7 Polarization: -98.96 SS G_CDS: -1.13 Total: -100.08 kcal Atomic # 8 Polarization: -104.38 SS G_CDS: -5.68 Total: -110.06 kcal Atomic # 14 Polarization: 53.97 SS G_CDS: 2.05 Total: 56.02 kcal Atomic # 16 Polarization: 103.98 SS G_CDS: -0.30 Total: 103.68 kcal Total: -82.65 -0.32 -82.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414215764.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.164 kcal (2) G-P(sol) polarization free energy of solvation -82.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds