Wall clock time and date at job start Wed Apr 1 2020 02:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99940 * 2 1 4 4 H 1.48507 * 109.46757 * 269.99935 * 3 2 1 5 5 H 1.48500 * 109.47328 * 29.99901 * 3 2 1 6 6 H 1.48498 * 109.46878 * 150.00251 * 3 2 1 7 7 C 1.37874 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00016 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00342 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47276 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47045 * 54.99794 * 10 9 7 12 12 N 1.46501 * 109.47034 * 294.99716 * 10 9 7 13 13 C 1.34773 * 119.99850 * 154.99652 * 12 10 9 14 14 O 1.21588 * 119.99966 * 0.02562 * 13 12 10 15 15 N 1.34779 * 119.99909 * 180.02562 * 13 12 10 16 16 C 1.46982 * 127.03017 * 359.97438 * 15 13 12 17 17 C 1.50774 * 106.55993 * 179.97438 * 16 15 13 18 18 O 1.21287 * 125.41995 * 180.02562 * 17 16 15 19 19 N 1.34298 * 109.15465 * 0.02562 * 17 16 15 20 20 C 1.46497 * 124.85474 * 179.97438 * 19 17 16 21 21 C 1.53000 * 117.50070 * 60.02781 * 20 19 17 22 22 C 1.52997 * 117.50064 * 351.40035 * 20 19 17 23 23 C 1.46229 * 110.29080 * 0.26457 * 19 17 16 24 24 C 1.50700 * 109.47317 * 174.99889 * 10 9 7 25 25 C 1.38240 * 119.99854 * 79.72433 * 24 10 9 26 26 C 1.38234 * 119.99731 * 179.78656 * 25 24 10 27 27 C 1.38240 * 119.99926 * 0.45042 * 26 25 24 28 28 C 1.38232 * 120.00135 * 359.80142 * 27 26 25 29 29 C 1.38235 * 120.00164 * 359.97438 * 28 27 26 30 30 H 0.96993 * 120.00244 * 359.97438 * 1 2 3 31 31 H 1.08994 * 109.47363 * 59.99778 * 9 7 2 32 32 H 1.09004 * 109.47257 * 299.99614 * 9 7 2 33 33 H 0.97000 * 119.99885 * 335.00587 * 12 10 9 34 34 H 1.09003 * 110.03644 * 60.72460 * 16 15 13 35 35 H 1.08991 * 110.04063 * 299.27399 * 16 15 13 36 36 H 1.09002 * 115.55899 * 205.71203 * 20 19 17 37 37 H 1.08990 * 117.49990 * 145.01695 * 21 20 19 38 38 H 1.09004 * 117.49237 * 359.97438 * 21 20 19 39 39 H 1.08999 * 117.49685 * 0.02562 * 22 20 19 40 40 H 1.08999 * 117.52022 * 214.96844 * 22 20 19 41 41 H 1.09000 * 109.75227 * 119.38761 * 23 19 17 42 42 H 1.08994 * 109.75327 * 240.08048 * 23 19 17 43 43 H 1.07995 * 119.99939 * 359.97438 * 25 24 10 44 44 H 1.08003 * 119.99720 * 180.27090 * 26 25 24 45 45 H 1.08000 * 119.99809 * 179.83684 * 27 26 25 46 46 H 1.07999 * 120.00056 * 180.02562 * 28 27 26 47 47 H 1.07992 * 120.00058 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9294 -3.5552 0.8423 12 7 3.0062 -3.6540 -1.2513 13 6 4.2309 -4.2146 -1.2991 14 8 4.7040 -4.7274 -0.3033 15 7 4.9312 -4.2067 -2.4506 16 6 4.5117 -3.6344 -3.7378 17 6 5.6411 -3.8804 -4.7060 18 8 5.6533 -3.5452 -5.8715 19 7 6.6312 -4.5296 -4.0722 20 6 7.8937 -4.9406 -4.6914 21 6 8.7827 -3.8427 -5.2790 22 6 8.0189 -4.7880 -6.2086 23 6 6.2662 -4.7737 -2.6774 24 6 1.4959 -4.9637 0.1244 25 6 0.8894 -5.5204 -0.9861 26 6 0.2057 -6.7166 -0.8734 27 6 0.1207 -7.3513 0.3517 28 6 0.7227 -6.7919 1.4632 29 6 1.4103 -5.5981 1.3496 30 1 -0.4850 0.8400 0.0004 31 1 0.6247 -2.5571 -0.8896 32 1 0.6240 -2.5567 0.8903 33 1 2.6286 -3.2450 -2.0457 34 1 4.3378 -2.5636 -3.6315 35 1 3.6050 -4.1275 -4.0881 36 1 8.3882 -5.7948 -4.2289 37 1 9.8619 -3.9746 -5.2031 38 1 8.4279 -2.8147 -5.2052 39 1 7.1622 -4.3815 -6.7460 40 1 8.5959 -5.5416 -6.7446 41 1 6.2520 -5.8461 -2.4826 42 1 6.9860 -4.2891 -2.0180 43 1 0.9522 -5.0224 -1.9423 44 1 -0.2644 -7.1538 -1.7419 45 1 -0.4157 -8.2845 0.4403 46 1 0.6566 -7.2880 2.4203 47 1 1.8803 -5.1609 2.2181 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279666150.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:00 Heat of formation + Delta-G solvation = 17.191784 kcal Electronic energy + Delta-G solvation = -29950.328785 eV Core-core repulsion = 25906.850454 eV Total energy + Delta-G solvation = -4043.478331 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.24753 -39.68750 -38.61822 -36.99928 -36.67691 -35.21474 -33.08703 -32.55979 -30.87038 -30.44756 -28.82207 -28.72906 -25.76739 -24.51354 -23.36140 -22.62897 -22.31739 -21.97871 -20.57121 -20.03132 -19.58755 -18.13946 -17.14750 -16.78453 -16.70806 -16.20353 -15.98797 -15.57390 -15.02213 -14.94435 -14.60970 -14.57252 -14.42638 -14.02669 -13.70355 -13.55675 -13.44406 -13.16402 -12.99781 -12.83844 -12.62618 -12.50497 -12.13185 -11.80746 -11.58305 -11.44928 -11.16994 -10.95790 -10.79622 -10.76312 -10.64153 -10.52341 -10.14012 -9.82577 -9.81460 -9.34202 -9.25596 -8.73328 -8.55254 -8.48778 -8.38401 -8.21105 -6.11984 -4.15700 1.74048 1.78722 2.12003 2.14620 2.75464 3.25087 3.33056 3.36529 3.41101 3.51953 3.95253 4.08623 4.29395 4.37809 4.43410 4.59245 4.67218 5.01408 5.05605 5.13128 5.22940 5.24683 5.25053 5.25919 5.30021 5.35500 5.41344 5.51283 5.60785 5.70700 5.88303 5.91725 5.92646 6.08651 6.24711 6.32921 6.40238 6.53758 6.71243 6.81487 6.82550 6.84007 7.02132 7.13740 7.38496 7.46541 7.59249 7.75298 7.84594 8.19267 8.23337 8.82375 8.90156 9.49725 10.98451 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.007655 B = 0.003901 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3657.031426 B = 7176.640085 C = 9868.566269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.202 3.798 11 H 0.089 0.911 12 N -0.708 5.708 13 C 0.738 3.262 14 O -0.581 6.581 15 N -0.648 5.648 16 C 0.067 3.933 17 C 0.524 3.476 18 O -0.513 6.513 19 N -0.600 5.600 20 C 0.085 3.915 21 C -0.188 4.188 22 C -0.186 4.186 23 C 0.360 3.640 24 C -0.073 4.073 25 C -0.106 4.106 26 C -0.125 4.125 27 C -0.134 4.134 28 C -0.123 4.123 29 C -0.107 4.107 30 H 0.262 0.738 31 H 0.025 0.975 32 H 0.037 0.963 33 H 0.399 0.601 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.135 0.865 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.130 0.870 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.113 0.887 46 H 0.116 0.884 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.085 -13.007 -7.397 18.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.098 3.902 11 H 0.107 0.893 12 N -0.360 5.360 13 C 0.439 3.561 14 O -0.459 6.459 15 N -0.391 5.391 16 C -0.060 4.060 17 C 0.311 3.689 18 O -0.388 6.388 19 N -0.333 5.333 20 C -0.018 4.018 21 C -0.227 4.227 22 C -0.223 4.223 23 C 0.151 3.849 24 C -0.074 4.074 25 C -0.125 4.125 26 C -0.143 4.143 27 C -0.152 4.152 28 C -0.141 4.141 29 C -0.125 4.125 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.055 0.945 33 H 0.233 0.767 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.153 0.847 37 H 0.121 0.879 38 H 0.115 0.885 39 H 0.147 0.853 40 H 0.118 0.882 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.134 0.866 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.258 -13.092 -7.153 18.105 hybrid contribution 0.206 1.200 -0.369 1.272 sum 10.465 -11.892 -7.522 17.536 Atomic orbital electron populations 1.69951 1.06004 1.26865 1.50136 1.24975 0.94781 0.99196 0.95081 0.86613 0.79933 0.83468 0.78133 1.20679 1.21185 1.19863 1.21119 0.93072 0.90342 1.51428 0.92381 1.19408 0.93166 0.90063 0.98721 1.20211 0.92959 0.91960 0.85100 0.89279 1.45158 1.15457 1.60242 1.15095 1.15131 0.80967 0.79472 0.80485 1.90926 1.70478 1.51852 1.32601 1.47177 1.18795 1.63550 1.09597 1.21914 0.97893 1.02435 0.83736 1.20566 0.83724 0.76840 0.87738 1.90677 1.80134 1.52710 1.15328 1.47758 1.16790 1.57423 1.11365 1.21475 0.85210 1.00010 0.95080 1.23398 0.98347 0.96796 1.04123 1.23736 1.04370 1.02538 0.91686 1.20943 0.84233 0.98869 0.80838 1.20566 0.96885 0.96599 0.93386 1.20885 0.97569 0.95565 0.98461 1.21040 0.99956 0.95987 0.97362 1.20998 1.00995 1.00029 0.93221 1.21044 0.98553 0.96211 0.98289 1.21016 0.99040 0.95035 0.97415 0.92822 0.95689 0.94460 0.76679 0.86988 0.87499 0.84749 0.87883 0.88496 0.85261 0.88175 0.90262 0.90160 0.86699 0.86779 0.86859 0.86592 0.86101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.08 13.29 55.43 0.74 -24.34 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -13.40 8.84 -34.44 -0.30 -13.71 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.55 4.49 -27.88 -0.13 0.42 16 10 C 0.20 3.94 2.11 -69.08 -0.15 3.80 16 11 H 0.09 1.90 7.44 -51.93 -0.39 1.52 16 12 N -0.71 -12.22 4.01 -59.81 -0.24 -12.46 16 13 C 0.74 12.62 8.49 -86.92 -0.74 11.88 16 14 O -0.58 -11.77 16.40 5.29 0.09 -11.69 16 15 N -0.65 -8.77 3.36 -184.00 -0.62 -9.39 16 16 C 0.07 0.79 6.36 -4.89 -0.03 0.76 16 17 C 0.52 6.56 7.99 -11.16 -0.09 6.47 16 18 O -0.51 -7.58 14.83 5.55 0.08 -7.50 16 19 N -0.60 -6.47 3.27 -169.96 -0.56 -7.02 16 20 C 0.09 0.74 6.90 -67.93 -0.47 0.27 16 21 C -0.19 -1.60 10.36 -26.73 -0.28 -1.87 16 22 C -0.19 -1.66 9.79 -26.73 -0.26 -1.93 16 23 C 0.36 4.07 7.57 -63.71 -0.48 3.59 16 24 C -0.07 -1.30 4.91 -104.62 -0.51 -1.82 16 25 C -0.11 -1.73 9.32 -39.58 -0.37 -2.10 16 26 C -0.13 -1.81 10.05 -39.58 -0.40 -2.20 16 27 C -0.13 -1.86 10.05 -39.58 -0.40 -2.25 16 28 C -0.12 -1.79 10.05 -39.58 -0.40 -2.19 16 29 C -0.11 -1.79 9.67 -39.58 -0.38 -2.17 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.40 6.35 7.69 -40.82 -0.31 6.04 16 34 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.13 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.13 1.52 5.37 -51.93 -0.28 1.24 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.11 1.74 7.73 -52.49 -0.41 1.34 16 44 H 0.11 1.36 8.06 -52.48 -0.42 0.93 16 45 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 46 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 47 H 0.12 1.93 8.04 -52.49 -0.42 1.51 16 LS Contribution 396.33 15.07 5.97 5.97 Total: -1.00 -31.80 396.33 -11.88 -43.68 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -6.84 Total: 8.51 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -5.48 Total: -1.50 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -0.68 Total: -53.22 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: 0.17 Total: -19.18 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.80 -11.88 -43.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279666150.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.872 kcal (2) G-P(sol) polarization free energy of solvation -31.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds