Wall clock time and date at job start Wed Apr 1 2020 02:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99940 * 2 1 4 4 H 1.48507 * 109.46757 * 269.99935 * 3 2 1 5 5 H 1.48500 * 109.47328 * 29.99901 * 3 2 1 6 6 H 1.48498 * 109.46878 * 150.00251 * 3 2 1 7 7 C 1.37874 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00016 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00342 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47276 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47045 * 54.99794 * 10 9 7 12 12 N 1.46501 * 109.47034 * 294.99716 * 10 9 7 13 13 C 1.34773 * 119.99850 * 154.99652 * 12 10 9 14 14 O 1.21588 * 119.99966 * 0.02562 * 13 12 10 15 15 N 1.34779 * 119.99909 * 180.02562 * 13 12 10 16 16 C 1.46982 * 127.03017 * 359.97438 * 15 13 12 17 17 C 1.50774 * 106.55993 * 179.97438 * 16 15 13 18 18 O 1.21287 * 125.41995 * 180.02562 * 17 16 15 19 19 N 1.34298 * 109.15465 * 0.02562 * 17 16 15 20 20 C 1.46497 * 124.85474 * 179.97438 * 19 17 16 21 21 C 1.53000 * 117.50070 * 60.02781 * 20 19 17 22 22 C 1.52997 * 117.50064 * 351.40035 * 20 19 17 23 23 C 1.46229 * 110.29080 * 0.26457 * 19 17 16 24 24 C 1.50700 * 109.47317 * 174.99889 * 10 9 7 25 25 C 1.38240 * 119.99854 * 79.72433 * 24 10 9 26 26 C 1.38234 * 119.99731 * 179.78656 * 25 24 10 27 27 C 1.38240 * 119.99926 * 0.45042 * 26 25 24 28 28 C 1.38232 * 120.00135 * 359.80142 * 27 26 25 29 29 C 1.38235 * 120.00164 * 359.97438 * 28 27 26 30 30 H 0.96993 * 120.00244 * 359.97438 * 1 2 3 31 31 H 1.08994 * 109.47363 * 59.99778 * 9 7 2 32 32 H 1.09004 * 109.47257 * 299.99614 * 9 7 2 33 33 H 0.97000 * 119.99885 * 335.00587 * 12 10 9 34 34 H 1.09003 * 110.03644 * 60.72460 * 16 15 13 35 35 H 1.08991 * 110.04063 * 299.27399 * 16 15 13 36 36 H 1.09002 * 115.55899 * 205.71203 * 20 19 17 37 37 H 1.08990 * 117.49990 * 145.01695 * 21 20 19 38 38 H 1.09004 * 117.49237 * 359.97438 * 21 20 19 39 39 H 1.08999 * 117.49685 * 0.02562 * 22 20 19 40 40 H 1.08999 * 117.52022 * 214.96844 * 22 20 19 41 41 H 1.09000 * 109.75227 * 119.38761 * 23 19 17 42 42 H 1.08994 * 109.75327 * 240.08048 * 23 19 17 43 43 H 1.07995 * 119.99939 * 359.97438 * 25 24 10 44 44 H 1.08003 * 119.99720 * 180.27090 * 26 25 24 45 45 H 1.08000 * 119.99809 * 179.83684 * 27 26 25 46 46 H 1.07999 * 120.00056 * 180.02562 * 28 27 26 47 47 H 1.07992 * 120.00058 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9294 -3.5552 0.8423 12 7 3.0062 -3.6540 -1.2513 13 6 4.2309 -4.2146 -1.2991 14 8 4.7040 -4.7274 -0.3033 15 7 4.9312 -4.2067 -2.4506 16 6 4.5117 -3.6344 -3.7378 17 6 5.6411 -3.8804 -4.7060 18 8 5.6533 -3.5452 -5.8715 19 7 6.6312 -4.5296 -4.0722 20 6 7.8937 -4.9406 -4.6914 21 6 8.7827 -3.8427 -5.2790 22 6 8.0189 -4.7880 -6.2086 23 6 6.2662 -4.7737 -2.6774 24 6 1.4959 -4.9637 0.1244 25 6 0.8894 -5.5204 -0.9861 26 6 0.2057 -6.7166 -0.8734 27 6 0.1207 -7.3513 0.3517 28 6 0.7227 -6.7919 1.4632 29 6 1.4103 -5.5981 1.3496 30 1 -0.4850 0.8400 0.0004 31 1 0.6247 -2.5571 -0.8896 32 1 0.6240 -2.5567 0.8903 33 1 2.6286 -3.2450 -2.0457 34 1 4.3378 -2.5636 -3.6315 35 1 3.6050 -4.1275 -4.0881 36 1 8.3882 -5.7948 -4.2289 37 1 9.8619 -3.9746 -5.2031 38 1 8.4279 -2.8147 -5.2052 39 1 7.1622 -4.3815 -6.7460 40 1 8.5959 -5.5416 -6.7446 41 1 6.2520 -5.8461 -2.4826 42 1 6.9860 -4.2891 -2.0180 43 1 0.9522 -5.0224 -1.9423 44 1 -0.2644 -7.1538 -1.7419 45 1 -0.4157 -8.2845 0.4403 46 1 0.6566 -7.2880 2.4203 47 1 1.8803 -5.1609 2.2181 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279666150.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:59 Heat of formation + Delta-G solvation = -0.115153 kcal Electronic energy + Delta-G solvation = -29951.079271 eV Core-core repulsion = 25906.850454 eV Total energy + Delta-G solvation = -4044.228816 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.28219 -40.96831 -39.82545 -37.94255 -37.67176 -36.74201 -34.77498 -33.90834 -32.13770 -31.63630 -30.50147 -29.76095 -27.15084 -25.94759 -24.19596 -23.77230 -23.35914 -23.29022 -21.88776 -21.23336 -20.70870 -19.34140 -18.59854 -18.00502 -17.73492 -17.64153 -17.25670 -16.65578 -16.44719 -16.26604 -15.96887 -15.75090 -15.50705 -15.08701 -14.91768 -14.69846 -14.49160 -14.33944 -14.19588 -14.15604 -13.86574 -13.79449 -13.61173 -13.40759 -12.92462 -12.61795 -12.53889 -12.46576 -12.22089 -12.13059 -11.85374 -11.58533 -11.53000 -11.45483 -11.31834 -10.89749 -10.57589 -10.36793 -9.97964 -9.72173 -9.52766 -9.46121 -8.19150 -6.28582 0.52742 0.59634 1.07483 1.16304 1.39137 1.41634 1.50984 1.73956 2.05129 2.40336 2.78065 2.82097 3.02702 3.06616 3.16571 3.67312 3.90304 3.97840 4.00609 4.06825 4.13810 4.18298 4.22348 4.24213 4.32545 4.35676 4.42246 4.51043 4.66269 4.69965 4.77619 4.79336 4.81649 4.98633 5.15433 5.20783 5.23016 5.26742 5.40592 5.46004 5.62042 5.64398 5.67783 5.75972 5.79437 5.84501 5.98907 6.18168 6.23075 6.78148 6.84280 6.87084 7.40210 7.46315 8.91444 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.007655 B = 0.003901 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3657.031426 B = 7176.640085 C = 9868.566269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.014 3.986 3 Si 0.952 3.048 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.054 0.946 9 C 0.038 3.962 10 C 0.220 3.780 11 H 0.064 0.936 12 N -0.705 5.705 13 C 0.740 3.260 14 O -0.615 6.615 15 N -0.645 5.645 16 C 0.067 3.933 17 C 0.522 3.478 18 O -0.539 6.539 19 N -0.593 5.593 20 C 0.078 3.922 21 C -0.185 4.185 22 C -0.189 4.189 23 C 0.360 3.640 24 C -0.098 4.098 25 C -0.119 4.119 26 C -0.126 4.126 27 C -0.129 4.129 28 C -0.124 4.124 29 C -0.130 4.130 30 H 0.263 0.737 31 H 0.013 0.987 32 H 0.008 0.992 33 H 0.404 0.596 34 H 0.112 0.888 35 H 0.124 0.876 36 H 0.168 0.832 37 H 0.129 0.871 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.125 0.875 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.119 0.881 44 H 0.144 0.856 45 H 0.149 0.851 46 H 0.143 0.857 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.035 -14.772 -8.067 20.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.185 4.185 3 Si 0.778 3.222 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.072 0.928 9 C 0.000 4.000 10 C 0.114 3.886 11 H 0.082 0.918 12 N -0.358 5.358 13 C 0.442 3.558 14 O -0.495 6.495 15 N -0.386 5.386 16 C -0.059 4.059 17 C 0.309 3.691 18 O -0.417 6.417 19 N -0.326 5.326 20 C -0.024 4.024 21 C -0.223 4.223 22 C -0.226 4.226 23 C 0.152 3.848 24 C -0.099 4.099 25 C -0.138 4.138 26 C -0.144 4.144 27 C -0.147 4.147 28 C -0.142 4.142 29 C -0.148 4.148 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.027 0.973 33 H 0.240 0.760 34 H 0.130 0.870 35 H 0.141 0.859 36 H 0.185 0.815 37 H 0.147 0.853 38 H 0.092 0.908 39 H 0.118 0.882 40 H 0.143 0.857 41 H 0.112 0.888 42 H 0.103 0.897 43 H 0.137 0.863 44 H 0.161 0.839 45 H 0.167 0.833 46 H 0.161 0.839 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 11.246 -14.864 -7.856 20.227 hybrid contribution -0.085 1.687 -0.171 1.698 sum 11.160 -13.177 -8.028 19.043 Atomic orbital electron populations 1.70059 1.07373 1.27653 1.51378 1.25715 0.95493 1.02424 0.94903 0.85650 0.78597 0.79608 0.78390 1.19788 1.21023 1.19682 1.21391 0.92999 0.91543 1.50561 0.92789 1.19144 0.93256 0.90957 0.96627 1.19664 0.91766 0.91931 0.85208 0.91823 1.44948 1.15753 1.60567 1.14498 1.15045 0.80704 0.79122 0.80896 1.90898 1.71152 1.53265 1.34148 1.46986 1.19409 1.63059 1.09165 1.22010 0.98553 1.02582 0.82754 1.20575 0.84201 0.76886 0.87397 1.90683 1.80704 1.53950 1.16319 1.47848 1.17195 1.56612 1.10937 1.21935 0.84330 1.01081 0.95026 1.23419 0.99713 0.95437 1.03734 1.23686 1.03811 1.03324 0.91793 1.21093 0.83025 0.99628 0.81082 1.20448 0.98398 0.96335 0.94739 1.21035 0.98052 0.96618 0.98070 1.21416 0.99038 0.95058 0.98885 1.21456 0.99921 1.00898 0.92436 1.21385 0.97517 0.95213 1.00060 1.21181 1.00239 0.96438 0.96973 0.92771 0.96910 0.97350 0.76001 0.86993 0.85871 0.81497 0.85251 0.90820 0.88226 0.85669 0.88752 0.89711 0.86339 0.83872 0.83303 0.83877 0.86646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.14 13.29 21.45 0.28 -52.86 16 2 C 0.01 0.73 5.46 84.65 0.46 1.19 16 3 Si 0.95 42.98 29.54 68.60 2.03 45.01 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 7 C -0.53 -27.84 8.84 25.60 0.23 -27.61 16 8 H 0.05 2.85 7.74 -2.91 -0.02 2.82 16 9 C 0.04 1.82 4.49 29.85 0.13 1.96 16 10 C 0.22 8.95 2.11 44.25 0.09 9.04 16 11 H 0.06 2.89 7.44 -2.39 -0.02 2.87 16 12 N -0.71 -24.95 4.01 -461.41 -1.85 -26.80 16 13 C 0.74 25.50 8.49 179.05 1.52 27.02 16 14 O -0.61 -25.22 16.40 -3.99 -0.07 -25.28 16 15 N -0.64 -17.07 3.36 -854.30 -2.87 -19.94 16 16 C 0.07 1.55 6.36 85.56 0.54 2.09 16 17 C 0.52 12.79 7.99 87.76 0.70 13.50 16 18 O -0.54 -15.99 14.83 -3.05 -0.05 -16.04 16 19 N -0.59 -11.98 3.27 -810.30 -2.65 -14.62 16 20 C 0.08 1.19 6.90 44.99 0.31 1.50 16 21 C -0.18 -2.83 10.36 30.60 0.32 -2.51 16 22 C -0.19 -3.09 9.79 30.60 0.30 -2.79 16 23 C 0.36 7.62 7.57 170.94 1.29 8.92 16 24 C -0.10 -3.58 4.91 -19.86 -0.10 -3.67 16 25 C -0.12 -3.83 9.32 22.27 0.21 -3.62 16 26 C -0.13 -3.34 10.05 22.27 0.22 -3.12 16 27 C -0.13 -3.19 10.05 22.27 0.22 -2.96 16 28 C -0.12 -3.40 10.05 22.27 0.22 -3.18 16 29 C -0.13 -4.41 9.67 22.27 0.22 -4.20 16 30 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 31 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.40 13.16 7.69 -92.71 -0.71 12.44 16 34 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.17 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.10 2.33 5.37 -2.39 -0.01 2.32 16 40 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.12 3.57 7.73 -2.91 -0.02 3.55 16 44 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 45 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 46 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 47 H 0.12 3.89 8.04 -2.91 -0.02 3.86 16 Total: -1.00 -70.48 396.33 2.00 -68.48 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: 0.27 Total: 30.50 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 6.90 Total: 11.56 kcal Atomic # 7 Polarization: -107.14 SS G_CDS: -7.08 Total: -114.22 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -0.11 Total: -41.32 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -70.48 2.00 -68.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279666150.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.362 kcal (2) G-P(sol) polarization free energy of solvation -70.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds