Wall clock time and date at job start Wed Apr 1 2020 02:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00543 * 2 1 4 4 H 1.48500 * 109.47332 * 270.00179 * 3 2 1 5 5 H 1.48507 * 109.46968 * 29.99989 * 3 2 1 6 6 H 1.48497 * 109.47467 * 149.99365 * 3 2 1 7 7 C 1.37879 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00318 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99761 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46993 * 180.02562 * 9 7 2 11 11 H 1.09007 * 109.47041 * 305.00111 * 10 9 7 12 12 N 1.46501 * 109.47008 * 64.99954 * 10 9 7 13 13 C 1.34773 * 119.99850 * 204.99700 * 12 10 9 14 14 O 1.21588 * 119.99966 * 0.02562 * 13 12 10 15 15 N 1.34779 * 119.99909 * 180.02562 * 13 12 10 16 16 C 1.46982 * 127.03017 * 359.97438 * 15 13 12 17 17 C 1.50774 * 106.55993 * 179.97438 * 16 15 13 18 18 O 1.21287 * 125.41995 * 180.02562 * 17 16 15 19 19 N 1.34298 * 109.15465 * 0.02562 * 17 16 15 20 20 C 1.46497 * 124.85474 * 179.97438 * 19 17 16 21 21 C 1.53000 * 117.50070 * 60.02781 * 20 19 17 22 22 C 1.52997 * 117.50064 * 351.40035 * 20 19 17 23 23 C 1.46229 * 110.29080 * 0.26457 * 19 17 16 24 24 C 1.50703 * 109.46986 * 185.00034 * 10 9 7 25 25 C 1.38234 * 119.99935 * 279.72450 * 24 10 9 26 26 C 1.38235 * 119.99606 * 179.80982 * 25 24 10 27 27 C 1.38236 * 120.00332 * 0.40118 * 26 25 24 28 28 C 1.38238 * 119.99879 * 359.85358 * 27 26 25 29 29 C 1.38234 * 119.99837 * 100.00362 * 24 10 9 30 30 H 0.97005 * 119.99286 * 0.02562 * 1 2 3 31 31 H 1.08993 * 109.47229 * 60.00262 * 9 7 2 32 32 H 1.09004 * 109.47039 * 300.00092 * 9 7 2 33 33 H 0.97000 * 119.99885 * 25.00635 * 12 10 9 34 34 H 1.09003 * 110.03644 * 60.72460 * 16 15 13 35 35 H 1.08991 * 110.04063 * 299.27399 * 16 15 13 36 36 H 1.09002 * 115.55899 * 205.71203 * 20 19 17 37 37 H 1.08990 * 117.49990 * 145.01695 * 21 20 19 38 38 H 1.09004 * 117.49237 * 359.97438 * 21 20 19 39 39 H 1.08999 * 117.49685 * 0.02562 * 22 20 19 40 40 H 1.08999 * 117.52022 * 214.96844 * 22 20 19 41 41 H 1.09000 * 109.75227 * 119.38761 * 23 19 17 42 42 H 1.08994 * 109.75327 * 240.08048 * 23 19 17 43 43 H 1.07999 * 119.99945 * 0.02562 * 25 24 10 44 44 H 1.07998 * 119.99937 * 180.22903 * 26 25 24 45 45 H 1.08000 * 120.00186 * 179.83147 * 27 26 25 46 46 H 1.07994 * 119.99972 * 179.97438 * 28 27 26 47 47 H 1.08003 * 120.00049 * 359.97438 * 29 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0018 11 1 2.9299 -3.5557 -0.8396 12 7 3.0051 -3.6535 1.2542 13 6 4.2297 -4.2142 1.3032 14 8 4.7038 -4.7268 0.3078 15 7 4.9287 -4.2066 2.4555 16 6 4.5083 -3.6337 3.7421 17 6 5.6359 -3.8816 4.7119 18 8 5.6466 -3.5473 5.8777 19 7 6.6263 -4.5315 4.0792 20 6 7.8878 -4.9433 4.6999 21 6 7.8099 -5.9037 5.8884 22 6 8.1783 -4.4358 6.1137 23 6 6.2685 -4.7631 2.6805 24 6 1.4957 -4.9638 -0.1220 25 6 0.8980 -5.5257 0.9906 26 6 0.2072 -6.7177 0.8761 27 6 0.1212 -7.3518 -0.3492 28 6 0.7234 -6.7925 -1.4607 29 6 1.4109 -5.5986 -1.3470 30 1 -0.4849 0.8402 -0.0004 31 1 0.6246 -2.5571 -0.8896 32 1 0.6239 -2.5566 0.8903 33 1 2.6269 -3.2443 2.0482 34 1 3.6007 -4.1261 4.0914 35 1 4.3355 -2.5629 3.6355 36 1 8.7331 -5.0511 4.0203 37 1 8.6040 -6.6432 5.9907 38 1 6.8200 -6.2287 6.2087 39 1 7.4306 -3.7958 6.5822 40 1 9.2146 -4.2098 6.3647 41 1 6.9897 -4.2695 2.0291 42 1 6.2589 -5.8335 2.4751 43 1 0.9677 -5.0318 1.9484 44 1 -0.2629 -7.1549 1.7445 45 1 -0.4161 -8.2844 -0.4380 46 1 0.6566 -7.2882 -2.4179 47 1 1.8814 -5.1616 -2.2154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279666153.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:03 Heat of formation + Delta-G solvation = -0.033555 kcal Electronic energy + Delta-G solvation = -29955.895293 eV Core-core repulsion = 25911.670015 eV Total energy + Delta-G solvation = -4044.225278 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.28285 -40.96987 -39.82653 -37.94249 -37.67091 -36.74181 -34.77316 -33.90771 -32.13843 -31.63723 -30.50357 -29.76193 -27.15017 -25.94793 -24.19586 -23.77066 -23.35848 -23.29030 -21.88816 -21.23434 -20.70854 -19.34429 -18.58582 -18.01119 -17.77885 -17.62044 -17.22343 -16.67453 -16.44532 -16.27579 -15.94974 -15.75710 -15.51633 -15.08087 -14.91750 -14.70034 -14.46115 -14.38797 -14.17054 -14.15884 -13.87796 -13.78836 -13.61299 -13.41203 -12.89906 -12.65018 -12.53268 -12.44585 -12.22041 -12.13051 -11.85480 -11.58430 -11.53090 -11.45217 -11.31218 -10.89887 -10.57624 -10.36623 -9.98243 -9.72450 -9.52878 -9.46147 -8.18873 -6.28314 0.52565 0.59330 1.07424 1.16317 1.40080 1.42109 1.51115 1.73815 2.05068 2.40699 2.78102 2.82099 3.02552 3.06560 3.16878 3.66962 3.90605 3.98234 4.00342 4.06588 4.13953 4.17763 4.23418 4.24199 4.31417 4.35425 4.42348 4.50946 4.66181 4.69805 4.77827 4.79161 4.81485 4.98811 5.15252 5.21212 5.22850 5.26679 5.40494 5.46130 5.61879 5.64146 5.67490 5.75942 5.79572 5.84441 5.98779 6.18196 6.22956 6.78110 6.84551 6.86979 7.40452 7.46188 8.91702 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.007721 B = 0.003886 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3625.694923 B = 7203.082597 C = 9891.689329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.013 3.987 3 Si 0.953 3.047 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.527 4.527 8 H 0.054 0.946 9 C 0.038 3.962 10 C 0.220 3.780 11 H 0.064 0.936 12 N -0.705 5.705 13 C 0.741 3.259 14 O -0.615 6.615 15 N -0.645 5.645 16 C 0.067 3.933 17 C 0.522 3.478 18 O -0.539 6.539 19 N -0.593 5.593 20 C 0.076 3.924 21 C -0.179 4.179 22 C -0.193 4.193 23 C 0.360 3.640 24 C -0.098 4.098 25 C -0.120 4.120 26 C -0.126 4.126 27 C -0.129 4.129 28 C -0.124 4.124 29 C -0.130 4.130 30 H 0.263 0.737 31 H 0.008 0.992 32 H 0.012 0.988 33 H 0.404 0.596 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.166 0.834 37 H 0.130 0.870 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.123 0.877 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.118 0.882 44 H 0.143 0.857 45 H 0.149 0.851 46 H 0.144 0.856 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.055 -14.774 8.052 20.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.565 4.565 8 H 0.073 0.927 9 C 0.000 4.000 10 C 0.114 3.886 11 H 0.082 0.918 12 N -0.358 5.358 13 C 0.442 3.558 14 O -0.495 6.495 15 N -0.386 5.386 16 C -0.059 4.059 17 C 0.309 3.691 18 O -0.416 6.416 19 N -0.326 5.326 20 C -0.026 4.026 21 C -0.217 4.217 22 C -0.230 4.230 23 C 0.152 3.848 24 C -0.099 4.099 25 C -0.138 4.138 26 C -0.144 4.144 27 C -0.147 4.147 28 C -0.142 4.142 29 C -0.148 4.148 30 H 0.072 0.928 31 H 0.026 0.974 32 H 0.031 0.969 33 H 0.240 0.760 34 H 0.140 0.860 35 H 0.131 0.869 36 H 0.183 0.817 37 H 0.148 0.852 38 H 0.096 0.904 39 H 0.117 0.883 40 H 0.141 0.859 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.136 0.864 44 H 0.161 0.839 45 H 0.167 0.833 46 H 0.161 0.839 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 11.266 -14.869 7.851 20.240 hybrid contribution -0.146 1.569 0.193 1.588 sum 11.120 -13.299 8.044 19.111 Atomic orbital electron populations 1.70066 1.07394 1.27640 1.51381 1.25726 0.95504 1.02462 0.94905 0.85636 0.78746 0.79578 0.78192 1.20413 1.20864 1.19235 1.21394 0.93019 0.91516 1.50549 0.92734 1.19145 0.93257 0.90974 0.96612 1.19669 0.91781 0.91923 0.85199 0.91768 1.44949 1.15791 1.60524 1.14502 1.15045 0.80725 0.79116 0.80879 1.90897 1.71115 1.53257 1.34186 1.46989 1.19128 1.63359 1.09152 1.22009 0.98525 1.02602 0.82762 1.20573 0.84195 0.76871 0.87420 1.90683 1.80496 1.54109 1.16358 1.47844 1.17403 1.56497 1.10831 1.21927 0.85441 1.04727 0.90474 1.23416 1.03486 0.93686 1.01099 1.23687 1.04368 0.98111 0.96822 1.21091 0.83052 0.99706 0.80978 1.20451 0.98438 0.96313 0.94718 1.21033 0.98101 0.96635 0.98036 1.21413 0.98980 0.95129 0.98890 1.21457 0.99944 1.00877 0.92446 1.21388 0.97508 0.95220 1.00051 1.21184 1.00232 0.96413 0.96998 0.92783 0.97363 0.96934 0.76007 0.85983 0.86902 0.81716 0.85188 0.90446 0.88274 0.85876 0.89381 0.89099 0.86363 0.83898 0.83307 0.83863 0.86613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.14 13.29 21.45 0.28 -52.86 16 2 C 0.01 0.70 5.46 84.65 0.46 1.16 16 3 Si 0.95 42.92 29.54 68.60 2.03 44.94 16 4 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.53 -27.78 8.84 25.60 0.23 -27.56 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.84 16 9 C 0.04 1.82 4.50 29.85 0.13 1.96 16 10 C 0.22 8.95 2.12 44.25 0.09 9.04 16 11 H 0.06 2.91 7.44 -2.38 -0.02 2.89 16 12 N -0.71 -24.98 3.99 -461.39 -1.84 -26.82 16 13 C 0.74 25.53 8.49 179.05 1.52 27.05 16 14 O -0.61 -25.21 16.40 -3.99 -0.07 -25.28 16 15 N -0.64 -17.12 3.36 -854.30 -2.87 -20.00 16 16 C 0.07 1.55 6.36 85.56 0.54 2.10 16 17 C 0.52 12.82 7.99 87.76 0.70 13.52 16 18 O -0.54 -16.00 14.83 -3.05 -0.05 -16.05 16 19 N -0.59 -12.01 3.27 -810.30 -2.65 -14.66 16 20 C 0.08 1.16 6.90 44.99 0.31 1.47 16 21 C -0.18 -2.57 10.36 30.60 0.32 -2.25 16 22 C -0.19 -3.19 9.79 30.60 0.30 -2.90 16 23 C 0.36 7.65 7.57 170.94 1.29 8.95 16 24 C -0.10 -3.58 4.91 -19.87 -0.10 -3.68 16 25 C -0.12 -3.85 9.33 22.27 0.21 -3.64 16 26 C -0.13 -3.36 10.05 22.27 0.22 -3.14 16 27 C -0.13 -3.20 10.05 22.27 0.22 -2.98 16 28 C -0.12 -3.41 10.05 22.27 0.22 -3.18 16 29 C -0.13 -4.42 9.67 22.27 0.22 -4.20 16 30 H 0.26 14.38 8.31 -92.70 -0.77 13.61 16 31 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.40 13.18 7.69 -92.71 -0.71 12.47 16 34 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.17 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.10 2.35 5.37 -2.39 -0.01 2.34 16 40 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.12 3.58 7.71 -2.91 -0.02 3.56 16 44 H 0.14 2.93 8.06 -2.91 -0.02 2.90 16 45 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 46 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 47 H 0.12 3.89 8.04 -2.91 -0.02 3.87 16 Total: -1.00 -70.31 396.30 2.01 -68.30 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: 0.27 Total: 30.70 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 6.90 Total: 11.72 kcal Atomic # 7 Polarization: -107.25 SS G_CDS: -7.07 Total: -114.33 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -0.11 Total: -41.33 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -70.31 2.01 -68.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279666153.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.264 kcal (2) G-P(sol) polarization free energy of solvation -70.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds