Wall clock time and date at job start Wed Apr 1 2020 02:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99842 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47011 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99588 * 179.97438 * 10 9 7 12 12 O 1.21579 * 120.00272 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99440 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99563 * 180.02562 * 13 11 10 15 15 H 1.09003 * 110.86028 * 31.21067 * 14 13 11 16 16 C 1.54633 * 110.97011 * 267.37553 * 14 13 11 17 17 C 1.51278 * 104.19671 * 217.08687 * 16 14 13 18 18 O 1.21281 * 124.94516 * 196.21950 * 17 16 14 19 19 N 1.34423 * 110.11701 * 16.25376 * 17 16 14 20 20 C 1.46498 * 124.34906 * 180.39089 * 19 17 16 21 21 H 1.09003 * 115.54575 * 205.69351 * 20 19 17 22 22 C 1.52994 * 117.49912 * 351.39523 * 20 19 17 23 23 C 1.52995 * 117.50221 * 60.02045 * 20 19 17 24 24 H 1.08999 * 117.49964 * 0.02562 * 23 20 19 25 25 C 1.50703 * 117.49972 * 145.02222 * 23 20 19 26 26 C 1.38235 * 120.00025 * 59.72593 * 25 23 20 27 27 C 1.38234 * 119.99696 * 179.76990 * 26 25 23 28 28 C 1.38238 * 120.00263 * 0.50334 * 27 26 25 29 29 C 1.38232 * 119.99501 * 359.74782 * 28 27 26 30 30 C 1.38226 * 120.00461 * 0.02562 * 29 28 27 31 31 C 1.46763 * 111.29875 * 0.40295 * 19 17 16 32 32 H 0.97000 * 119.99838 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.47053 * 299.99554 * 9 7 2 34 34 H 1.08991 * 109.47398 * 59.99511 * 9 7 2 35 35 H 0.97000 * 120.00105 * 359.97438 * 10 9 7 36 36 H 0.97000 * 120.00253 * 359.97438 * 13 11 10 37 37 H 1.08999 * 110.48107 * 335.76535 * 16 14 13 38 38 H 1.09002 * 110.48224 * 98.40733 * 16 14 13 39 39 H 1.09005 * 117.49957 * 214.98312 * 22 20 19 40 40 H 1.09000 * 117.50341 * 0.02562 * 22 20 19 41 41 H 1.07994 * 119.99826 * 359.97438 * 26 25 23 42 42 H 1.08007 * 119.99712 * 180.23415 * 27 26 25 43 43 H 1.07997 * 120.00210 * 179.73069 * 28 27 26 44 44 H 1.08001 * 119.99624 * 179.97438 * 29 28 27 45 45 H 1.08008 * 120.00322 * 179.97438 * 30 29 28 46 46 H 1.09004 * 110.24646 * 223.98045 * 31 19 17 47 47 H 1.09003 * 110.23874 * 101.99153 * 31 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7537 -4.8833 0.0011 12 8 0.5584 -5.1055 0.0011 13 7 2.6296 -5.9078 0.0016 14 6 2.1412 -7.2889 0.0016 15 1 1.1907 -7.3645 -0.5266 16 6 2.0185 -7.8325 1.4440 17 6 2.4398 -9.2810 1.3317 18 8 2.2246 -10.1339 2.1668 19 7 3.0883 -9.4854 0.1721 20 6 3.6249 -10.7789 -0.2581 21 1 4.4634 -10.7322 -0.9531 22 6 3.6120 -11.9223 0.7583 23 6 2.6364 -11.9353 -0.4202 24 1 1.5866 -11.7336 -0.2072 25 6 2.8966 -12.9231 -1.5282 26 6 4.0766 -13.6428 -1.5495 27 6 4.3132 -14.5523 -2.5632 28 6 3.3744 -14.7345 -3.5614 29 6 2.1967 -14.0110 -3.5429 30 6 1.9580 -13.1049 -2.5267 31 6 3.1897 -8.2460 -0.6075 32 1 -0.4850 -0.8401 -0.0004 33 1 0.6241 -2.5567 0.8904 34 1 0.6247 -2.5570 -0.8895 35 1 3.1568 -3.4354 0.0002 36 1 3.5833 -5.7305 0.0012 37 1 2.6870 -7.2915 2.1136 38 1 0.9881 -7.7608 1.7922 39 1 4.4421 -12.6283 0.7322 40 1 3.2038 -11.7124 1.7469 41 1 4.8122 -13.4969 -0.7723 42 1 5.2336 -15.1174 -2.5778 43 1 3.5612 -15.4420 -4.3558 44 1 1.4634 -14.1531 -4.3229 45 1 1.0380 -12.5393 -2.5124 46 1 2.9602 -8.4397 -1.6553 47 1 4.1890 -7.8212 -0.5119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426446940.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:08 Heat of formation + Delta-G solvation = -6.017448 kcal Electronic energy + Delta-G solvation = -28316.810537 eV Core-core repulsion = 24272.325778 eV Total energy + Delta-G solvation = -4044.484759 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.18054 -39.83335 -39.24210 -36.99950 -36.80605 -34.50560 -33.78838 -32.46372 -31.34502 -31.12407 -29.66614 -27.79759 -26.41288 -24.25086 -23.45700 -22.97736 -22.72057 -21.74999 -20.77436 -20.54926 -19.41540 -18.42145 -17.64973 -17.17037 -16.77864 -16.68235 -15.80909 -15.45716 -15.35296 -14.95573 -14.90164 -14.46361 -14.09772 -13.91531 -13.84386 -13.76703 -13.73037 -13.53692 -13.36096 -13.21729 -13.01278 -12.37576 -12.27262 -12.20421 -11.84100 -11.67437 -11.59183 -11.37511 -11.27494 -11.04197 -10.80158 -10.75131 -10.20215 -9.94983 -9.68271 -9.36126 -9.29536 -9.03815 -8.82884 -8.70299 -8.57657 -7.99756 -6.54199 -4.27989 0.92557 1.02973 2.26265 2.41045 3.05114 3.25354 3.35747 3.38970 3.54673 3.63410 3.68821 4.07772 4.19570 4.28449 4.41038 4.44164 4.47286 4.56780 4.62973 4.64948 4.75464 4.77002 4.85480 4.92619 5.06864 5.10966 5.23153 5.24879 5.26032 5.27891 5.59506 5.63148 5.67924 5.69820 5.74435 5.82884 6.12345 6.15252 6.24995 6.32425 6.53954 6.62404 6.74580 6.79636 7.20951 7.23240 7.36546 7.77244 7.87131 8.25293 8.56608 8.72660 9.11956 9.46003 10.86114 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.022425 B = 0.001690 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.326563 B =16559.216877 C =17043.075132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 1.079 2.921 4 H -0.286 1.286 5 H -0.282 1.282 6 H -0.288 1.288 7 C -0.624 4.624 8 H 0.057 0.943 9 C 0.257 3.743 10 N -0.721 5.721 11 C 0.695 3.305 12 O -0.597 6.597 13 N -0.746 5.746 14 C 0.160 3.840 15 H 0.114 0.886 16 C -0.171 4.171 17 C 0.525 3.475 18 O -0.525 6.525 19 N -0.592 5.592 20 C 0.098 3.902 21 H 0.131 0.869 22 C -0.179 4.179 23 C -0.127 4.127 24 H 0.115 0.885 25 C -0.047 4.047 26 C -0.123 4.123 27 C -0.117 4.117 28 C -0.127 4.127 29 C -0.117 4.117 30 C -0.112 4.112 31 C 0.100 3.900 32 H 0.273 0.727 33 H 0.016 0.984 34 H 0.016 0.984 35 H 0.390 0.610 36 H 0.395 0.605 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.137 0.863 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.122 0.878 46 H 0.090 0.910 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.019 -27.893 -5.041 30.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.183 4.183 3 Si 0.906 3.094 4 H -0.213 1.213 5 H -0.208 1.208 6 H -0.214 1.214 7 C -0.662 4.662 8 H 0.075 0.925 9 C 0.135 3.865 10 N -0.373 5.373 11 C 0.395 3.605 12 O -0.476 6.476 13 N -0.403 5.403 14 C 0.052 3.948 15 H 0.132 0.868 16 C -0.212 4.212 17 C 0.313 3.687 18 O -0.402 6.402 19 N -0.324 5.324 20 C -0.006 4.006 21 H 0.149 0.851 22 C -0.216 4.216 23 C -0.147 4.147 24 H 0.133 0.867 25 C -0.047 4.047 26 C -0.140 4.140 27 C -0.135 4.135 28 C -0.145 4.145 29 C -0.135 4.135 30 C -0.130 4.130 31 C -0.024 4.024 32 H 0.084 0.916 33 H 0.034 0.966 34 H 0.034 0.966 35 H 0.222 0.778 36 H 0.230 0.770 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.120 0.880 40 H 0.155 0.845 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.140 0.860 46 H 0.108 0.892 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.585 -26.860 -4.620 29.237 hybrid contribution 1.128 -1.543 -0.157 1.918 sum 11.713 -28.403 -4.777 31.092 Atomic orbital electron populations 1.70728 1.06875 1.31133 1.44884 1.25871 0.96421 1.02707 0.93316 0.83403 0.74494 0.74623 0.76852 1.21286 1.20779 1.21400 1.22079 0.94597 0.91450 1.58082 0.92454 1.19074 0.88457 0.82534 0.96436 1.45529 1.10854 1.04022 1.76898 1.16115 0.85150 0.81035 0.78196 1.90887 1.14146 1.84123 1.58455 1.45029 1.09033 1.04035 1.82195 1.21421 0.98241 0.80515 0.94596 0.86827 1.22934 1.05663 0.92869 0.99750 1.20993 0.76448 0.90687 0.80536 1.90605 1.56594 1.49464 1.43502 1.47642 1.56648 1.08030 1.20096 1.21678 0.98192 0.78289 1.02441 0.85141 1.23981 1.01446 0.98602 0.97541 1.21581 0.98058 0.98358 0.96697 0.86730 1.19123 0.94478 0.96260 0.94832 1.21079 0.97167 0.96887 0.98911 1.21134 0.99362 0.98334 0.94675 1.21168 0.94375 1.00005 0.98924 1.21161 0.97432 0.96396 0.98469 1.21017 0.99316 0.98518 0.94153 1.22352 0.99910 0.83545 0.96581 0.91613 0.96616 0.96640 0.77769 0.77050 0.87146 0.87149 0.88007 0.84529 0.85884 0.86061 0.86153 0.85977 0.85986 0.89180 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.91 13.65 55.43 0.76 -26.16 16 2 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 3 Si 1.08 24.00 29.90 -169.99 -5.08 18.92 16 4 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.29 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.62 -16.74 9.28 -34.44 -0.32 -17.05 16 8 H 0.06 1.45 7.60 -52.49 -0.40 1.05 16 9 C 0.26 6.60 4.74 -5.19 -0.02 6.57 16 10 N -0.72 -14.46 5.55 -66.41 -0.37 -14.83 16 11 C 0.70 12.97 8.57 -86.91 -0.74 12.23 16 12 O -0.60 -13.74 15.98 5.30 0.08 -13.66 16 13 N -0.75 -9.21 5.16 -57.08 -0.29 -9.51 16 14 C 0.16 1.73 3.53 -66.30 -0.23 1.50 16 15 H 0.11 1.44 7.54 -51.93 -0.39 1.05 16 16 C -0.17 -1.93 6.59 -26.74 -0.18 -2.10 16 17 C 0.52 6.21 7.88 -10.86 -0.09 6.12 16 18 O -0.53 -7.72 14.68 5.56 0.08 -7.63 16 19 N -0.59 -5.52 3.27 -164.85 -0.54 -6.06 16 20 C 0.10 0.82 6.51 -67.94 -0.44 0.38 16 21 H 0.13 0.86 8.14 -51.93 -0.42 0.44 16 22 C -0.18 -1.59 9.10 -26.73 -0.24 -1.83 16 23 C -0.13 -1.14 5.86 -91.77 -0.54 -1.68 16 24 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 25 C -0.05 -0.39 5.61 -104.62 -0.59 -0.98 16 26 C -0.12 -0.91 9.29 -39.58 -0.37 -1.28 16 27 C -0.12 -0.80 10.05 -39.58 -0.40 -1.20 16 28 C -0.13 -0.86 10.05 -39.58 -0.40 -1.26 16 29 C -0.12 -0.85 10.05 -39.59 -0.40 -1.25 16 30 C -0.11 -0.92 9.74 -39.59 -0.39 -1.31 16 31 C 0.10 0.77 7.08 -3.12 -0.02 0.75 16 32 H 0.27 8.26 7.22 -40.82 -0.29 7.97 16 33 H 0.02 0.45 8.01 -51.92 -0.42 0.03 16 34 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 35 H 0.39 6.64 8.34 -40.82 -0.34 6.30 16 36 H 0.40 3.62 8.44 -40.82 -0.34 3.28 16 37 H 0.11 1.19 8.08 -51.93 -0.42 0.77 16 38 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.10 0.70 6.18 -51.93 -0.32 0.38 16 40 H 0.14 1.58 5.29 -51.93 -0.27 1.30 16 41 H 0.12 0.74 6.03 -52.49 -0.32 0.42 16 42 H 0.12 0.58 8.06 -52.48 -0.42 0.16 16 43 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 44 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 45 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 46 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.08 0.48 7.80 -51.93 -0.40 0.07 16 LS Contribution 392.22 15.07 5.91 5.91 Total: -1.00 -34.64 392.22 -11.43 -46.07 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -6.52 Total: 8.81 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -5.46 Total: -1.86 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -0.45 Total: -56.55 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: 0.17 Total: -21.29 kcal Atomic # 14 Polarization: 24.00 SS G_CDS: -5.08 Total: 18.92 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.64 -11.43 -46.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426446940.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.049 kcal (2) G-P(sol) polarization free energy of solvation -34.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds