Wall clock time and date at job start Wed Apr 1 2020 02:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99842 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47011 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99588 * 179.97438 * 10 9 7 12 12 O 1.21579 * 120.00272 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99440 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99563 * 180.02562 * 13 11 10 15 15 H 1.09003 * 110.86028 * 31.21067 * 14 13 11 16 16 C 1.54633 * 110.97011 * 267.37553 * 14 13 11 17 17 C 1.51278 * 104.19671 * 217.08687 * 16 14 13 18 18 O 1.21281 * 124.94516 * 196.21950 * 17 16 14 19 19 N 1.34423 * 110.11701 * 16.25376 * 17 16 14 20 20 C 1.46498 * 124.34906 * 180.39089 * 19 17 16 21 21 H 1.09003 * 115.54575 * 205.69351 * 20 19 17 22 22 C 1.52994 * 117.49912 * 351.39523 * 20 19 17 23 23 C 1.52995 * 117.50221 * 60.02045 * 20 19 17 24 24 H 1.08999 * 117.49964 * 0.02562 * 23 20 19 25 25 C 1.50703 * 117.49972 * 145.02222 * 23 20 19 26 26 C 1.38235 * 120.00025 * 59.72593 * 25 23 20 27 27 C 1.38234 * 119.99696 * 179.76990 * 26 25 23 28 28 C 1.38238 * 120.00263 * 0.50334 * 27 26 25 29 29 C 1.38232 * 119.99501 * 359.74782 * 28 27 26 30 30 C 1.38226 * 120.00461 * 0.02562 * 29 28 27 31 31 C 1.46763 * 111.29875 * 0.40295 * 19 17 16 32 32 H 0.97000 * 119.99838 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.47053 * 299.99554 * 9 7 2 34 34 H 1.08991 * 109.47398 * 59.99511 * 9 7 2 35 35 H 0.97000 * 120.00105 * 359.97438 * 10 9 7 36 36 H 0.97000 * 120.00253 * 359.97438 * 13 11 10 37 37 H 1.08999 * 110.48107 * 335.76535 * 16 14 13 38 38 H 1.09002 * 110.48224 * 98.40733 * 16 14 13 39 39 H 1.09005 * 117.49957 * 214.98312 * 22 20 19 40 40 H 1.09000 * 117.50341 * 0.02562 * 22 20 19 41 41 H 1.07994 * 119.99826 * 359.97438 * 26 25 23 42 42 H 1.08007 * 119.99712 * 180.23415 * 27 26 25 43 43 H 1.07997 * 120.00210 * 179.73069 * 28 27 26 44 44 H 1.08001 * 119.99624 * 179.97438 * 29 28 27 45 45 H 1.08008 * 120.00322 * 179.97438 * 30 29 28 46 46 H 1.09004 * 110.24646 * 223.98045 * 31 19 17 47 47 H 1.09003 * 110.23874 * 101.99153 * 31 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7537 -4.8833 0.0011 12 8 0.5584 -5.1055 0.0011 13 7 2.6296 -5.9078 0.0016 14 6 2.1412 -7.2889 0.0016 15 1 1.1907 -7.3645 -0.5266 16 6 2.0185 -7.8325 1.4440 17 6 2.4398 -9.2810 1.3317 18 8 2.2246 -10.1339 2.1668 19 7 3.0883 -9.4854 0.1721 20 6 3.6249 -10.7789 -0.2581 21 1 4.4634 -10.7322 -0.9531 22 6 3.6120 -11.9223 0.7583 23 6 2.6364 -11.9353 -0.4202 24 1 1.5866 -11.7336 -0.2072 25 6 2.8966 -12.9231 -1.5282 26 6 4.0766 -13.6428 -1.5495 27 6 4.3132 -14.5523 -2.5632 28 6 3.3744 -14.7345 -3.5614 29 6 2.1967 -14.0110 -3.5429 30 6 1.9580 -13.1049 -2.5267 31 6 3.1897 -8.2460 -0.6075 32 1 -0.4850 -0.8401 -0.0004 33 1 0.6241 -2.5567 0.8904 34 1 0.6247 -2.5570 -0.8895 35 1 3.1568 -3.4354 0.0002 36 1 3.5833 -5.7305 0.0012 37 1 2.6870 -7.2915 2.1136 38 1 0.9881 -7.7608 1.7922 39 1 4.4421 -12.6283 0.7322 40 1 3.2038 -11.7124 1.7469 41 1 4.8122 -13.4969 -0.7723 42 1 5.2336 -15.1174 -2.5778 43 1 3.5612 -15.4420 -4.3558 44 1 1.4634 -14.1531 -4.3229 45 1 1.0380 -12.5393 -2.5124 46 1 2.9602 -8.4397 -1.6553 47 1 4.1890 -7.8212 -0.5119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426446940.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:06 Heat of formation + Delta-G solvation = -29.105111 kcal Electronic energy + Delta-G solvation = -28317.811694 eV Core-core repulsion = 24272.325778 eV Total energy + Delta-G solvation = -4045.485915 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.07540 -40.91071 -40.23169 -37.89450 -37.72279 -36.37300 -35.03547 -34.30647 -31.99533 -31.79250 -30.52994 -28.99654 -28.03140 -25.00189 -24.78913 -24.15310 -23.32982 -22.86800 -21.98510 -21.39719 -20.35363 -19.98898 -18.70757 -18.25299 -17.95311 -17.62416 -16.83756 -16.46945 -16.37616 -16.01458 -15.84753 -15.62833 -15.32553 -15.13716 -15.09797 -14.80037 -14.60001 -14.38214 -14.33793 -14.24424 -14.10166 -13.87811 -13.78800 -13.06258 -12.98609 -12.87567 -12.53835 -12.47594 -12.20849 -12.13679 -11.87527 -11.83773 -11.43071 -11.39947 -10.91543 -10.87017 -10.74377 -10.33259 -10.03578 -9.82795 -9.73968 -9.24908 -8.76244 -6.51547 0.37155 0.49635 1.32987 1.50165 1.58909 1.67608 1.83954 1.87209 2.12985 2.57707 2.64074 3.01824 3.11794 3.18098 3.35649 3.48202 3.56890 3.71018 3.79394 3.87790 3.94005 4.00109 4.14484 4.24862 4.29475 4.42001 4.47861 4.59042 4.63641 4.67812 4.71124 4.77571 4.85350 4.95308 5.02104 5.02633 5.16102 5.16993 5.39412 5.48234 5.52378 5.55121 5.59243 5.63594 5.70401 5.90459 6.05977 6.11093 6.17253 6.39513 6.96176 7.17027 7.33886 7.62316 8.63417 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.022425 B = 0.001690 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.326563 B =16559.216877 C =17043.075132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.033 4.033 3 Si 1.132 2.868 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.260 1.260 7 C -0.627 4.627 8 H 0.078 0.922 9 C 0.271 3.729 10 N -0.717 5.717 11 C 0.696 3.304 12 O -0.645 6.645 13 N -0.715 5.715 14 C 0.159 3.841 15 H 0.094 0.906 16 C -0.168 4.168 17 C 0.522 3.478 18 O -0.559 6.559 19 N -0.585 5.585 20 C 0.102 3.898 21 H 0.160 0.840 22 C -0.180 4.180 23 C -0.128 4.128 24 H 0.090 0.910 25 C -0.058 4.058 26 C -0.127 4.127 27 C -0.121 4.121 28 C -0.132 4.132 29 C -0.126 4.126 30 C -0.130 4.130 31 C 0.110 3.890 32 H 0.255 0.745 33 H -0.018 1.018 34 H -0.017 1.017 35 H 0.408 0.592 36 H 0.417 0.583 37 H 0.119 0.881 38 H 0.090 0.910 39 H 0.125 0.875 40 H 0.109 0.891 41 H 0.138 0.862 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.135 0.865 45 H 0.119 0.881 46 H 0.110 0.890 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.928 -28.565 -6.345 33.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.232 4.232 3 Si 0.952 3.048 4 H -0.196 1.196 5 H -0.213 1.213 6 H -0.184 1.184 7 C -0.665 4.665 8 H 0.096 0.904 9 C 0.147 3.853 10 N -0.370 5.370 11 C 0.396 3.604 12 O -0.527 6.527 13 N -0.373 5.373 14 C 0.052 3.948 15 H 0.112 0.888 16 C -0.209 4.209 17 C 0.311 3.689 18 O -0.439 6.439 19 N -0.316 5.316 20 C -0.001 4.001 21 H 0.177 0.823 22 C -0.217 4.217 23 C -0.148 4.148 24 H 0.109 0.891 25 C -0.058 4.058 26 C -0.145 4.145 27 C -0.139 4.139 28 C -0.150 4.150 29 C -0.143 4.143 30 C -0.148 4.148 31 C -0.013 4.013 32 H 0.064 0.936 33 H -0.001 1.001 34 H 0.001 0.999 35 H 0.243 0.757 36 H 0.256 0.744 37 H 0.137 0.863 38 H 0.109 0.891 39 H 0.143 0.857 40 H 0.127 0.873 41 H 0.156 0.844 42 H 0.161 0.839 43 H 0.158 0.842 44 H 0.153 0.847 45 H 0.137 0.863 46 H 0.128 0.872 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 14.587 -27.597 -5.953 31.778 hybrid contribution -0.119 -1.482 0.241 1.507 sum 14.469 -29.080 -5.712 32.979 Atomic orbital electron populations 1.70875 1.08316 1.30017 1.47546 1.27603 0.96340 1.07111 0.92103 0.82758 0.74159 0.70050 0.77872 1.19649 1.21348 1.18428 1.22448 0.95663 0.91632 1.56754 0.90421 1.18543 0.88803 0.84566 0.93372 1.45095 1.10862 1.03501 1.77554 1.16229 0.85082 0.81489 0.77622 1.90866 1.16711 1.84811 1.60274 1.44648 1.09309 1.03174 1.80159 1.21446 0.98880 0.79998 0.94486 0.88822 1.22852 1.04780 0.93150 1.00148 1.20999 0.76591 0.90328 0.81013 1.90604 1.58068 1.50250 1.44948 1.47695 1.55598 1.09097 1.19220 1.21971 0.98452 0.77339 1.02321 0.82254 1.23900 1.02013 0.99609 0.96143 1.21435 0.96902 0.99257 0.97222 0.89138 1.19125 0.95247 0.96717 0.94700 1.21274 0.96993 0.96741 0.99515 1.21456 1.00163 0.98079 0.94209 1.21490 0.94019 0.99996 0.99474 1.21396 0.98191 0.96198 0.98556 1.21150 0.99511 0.99301 0.94875 1.22430 1.00231 0.81845 0.96776 0.93614 1.00052 0.99887 0.75652 0.74429 0.86279 0.89122 0.85746 0.87301 0.84449 0.83889 0.84165 0.84662 0.86304 0.87212 0.86892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.06 13.65 21.45 0.29 -56.76 16 2 C -0.03 -1.83 5.46 84.65 0.46 -1.36 16 3 Si 1.13 47.00 29.90 68.60 2.05 49.05 16 4 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 5 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 7 C -0.63 -33.44 9.28 25.60 0.24 -33.20 16 8 H 0.08 3.75 7.60 -2.91 -0.02 3.73 16 9 C 0.27 14.34 4.74 85.63 0.41 14.75 16 10 N -0.72 -28.46 5.55 -482.29 -2.68 -31.13 16 11 C 0.70 25.87 8.57 179.05 1.53 27.40 16 12 O -0.64 -30.67 15.98 -3.97 -0.06 -30.74 16 13 N -0.72 -16.36 5.16 -452.76 -2.33 -18.70 16 14 C 0.16 3.26 3.53 46.05 0.16 3.43 16 15 H 0.09 2.39 7.54 -2.39 -0.02 2.37 16 16 C -0.17 -3.79 6.59 30.59 0.20 -3.58 16 17 C 0.52 12.29 7.88 87.90 0.69 12.99 16 18 O -0.56 -17.01 14.68 -3.03 -0.04 -17.05 16 19 N -0.59 -9.91 3.27 -794.05 -2.60 -12.50 16 20 C 0.10 1.50 6.51 44.99 0.29 1.80 16 21 H 0.16 1.48 8.14 -2.39 -0.02 1.46 16 22 C -0.18 -3.03 9.10 30.59 0.28 -2.75 16 23 C -0.13 -2.25 5.86 -11.54 -0.07 -2.32 16 24 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 25 C -0.06 -0.91 5.61 -19.86 -0.11 -1.02 16 26 C -0.13 -1.62 9.29 22.27 0.21 -1.41 16 27 C -0.12 -1.34 10.05 22.27 0.22 -1.12 16 28 C -0.13 -1.51 10.05 22.27 0.22 -1.29 16 29 C -0.13 -1.68 10.05 22.27 0.22 -1.46 16 30 C -0.13 -2.09 9.74 22.27 0.22 -1.87 16 31 C 0.11 1.36 7.08 86.83 0.61 1.97 16 32 H 0.25 16.19 7.22 -92.71 -0.67 15.52 16 33 H -0.02 -1.09 8.01 -2.38 -0.02 -1.11 16 34 H -0.02 -0.98 8.01 -2.39 -0.02 -1.00 16 35 H 0.41 13.07 8.34 -92.71 -0.77 12.29 16 36 H 0.42 6.16 8.44 -92.71 -0.78 5.38 16 37 H 0.12 2.47 8.08 -2.39 -0.02 2.45 16 38 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.12 1.47 6.18 -2.38 -0.01 1.45 16 40 H 0.11 2.57 5.29 -2.39 -0.01 2.56 16 41 H 0.14 1.25 6.03 -2.91 -0.02 1.24 16 42 H 0.14 0.91 8.06 -2.91 -0.02 0.88 16 43 H 0.14 0.98 8.06 -2.91 -0.02 0.95 16 44 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 45 H 0.12 1.84 8.06 -2.91 -0.02 1.82 16 46 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 47 H 0.11 0.77 7.80 -2.39 -0.02 0.75 16 Total: -1.00 -79.53 392.22 -0.01 -79.54 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: -0.44 Total: 27.36 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 5.80 Total: 10.93 kcal Atomic # 7 Polarization: -111.78 SS G_CDS: -7.32 Total: -119.10 kcal Atomic # 8 Polarization: -47.68 SS G_CDS: -0.11 Total: -47.79 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.05 Total: 49.05 kcal Total: -79.53 -0.01 -79.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426446940.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.439 kcal (2) G-P(sol) polarization free energy of solvation -79.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds