Wall clock time and date at job start Wed Apr 1 2020 03:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86799 * 119.99990 * 2 1 4 4 H 1.48499 * 109.47258 * 270.00049 * 3 2 1 5 5 H 1.48500 * 109.47021 * 30.00296 * 3 2 1 6 6 H 1.48499 * 109.47049 * 149.99914 * 3 2 1 7 7 C 1.39930 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00225 * 196.78483 * 7 2 1 9 9 C 1.41411 * 120.00446 * 16.78802 * 7 2 1 10 10 C 1.40780 * 120.20892 * 25.17612 * 9 7 2 11 11 C 1.37639 * 119.88549 * 180.02562 * 10 9 7 12 12 C 1.38535 * 120.32150 * 359.97438 * 11 10 9 13 13 C 1.39248 * 120.42632 * 0.02917 * 12 11 10 14 14 N 1.39954 * 119.94568 * 179.97438 * 13 12 11 15 15 C 1.34772 * 120.00394 * 145.76510 * 14 13 12 16 16 O 1.21584 * 120.00044 * 354.85061 * 15 14 13 17 17 N 1.34782 * 120.00367 * 174.84446 * 15 14 13 18 18 C 1.46495 * 119.99934 * 180.02562 * 17 15 14 19 19 H 1.09002 * 109.73766 * 34.59664 * 18 17 15 20 20 C 1.53345 * 109.60457 * 274.18548 * 18 17 15 21 21 C 1.53066 * 108.42585 * 307.78053 * 20 18 17 22 22 C 1.50181 * 109.89066 * 311.09568 * 21 20 18 23 23 O 1.21275 * 118.24551 * 197.60765 * 22 21 20 24 24 N 1.33350 * 123.50628 * 17.58250 * 22 21 20 25 25 C 1.45751 * 124.10724 * 357.78068 * 24 22 21 26 26 H 1.09002 * 109.30045 * 258.96585 * 25 24 22 27 27 C 1.53006 * 109.30104 * 139.38737 * 25 24 22 28 28 C 1.52997 * 117.49683 * 356.24627 * 27 25 24 29 29 C 1.52988 * 117.50186 * 64.90740 * 27 25 24 30 30 C 1.38275 * 120.11014 * 0.22543 * 13 12 11 31 31 H 0.96994 * 120.00192 * 0.02562 * 1 2 3 32 32 H 1.07999 * 120.05368 * 359.97438 * 10 9 7 33 33 H 1.07999 * 119.83746 * 179.97438 * 11 10 9 34 34 H 1.07992 * 119.78474 * 179.97438 * 12 11 10 35 35 H 0.97006 * 120.00119 * 325.76311 * 14 13 12 36 36 H 0.97003 * 119.99352 * 0.02562 * 17 15 14 37 37 H 1.09003 * 109.67218 * 188.04396 * 20 18 17 38 38 H 1.08999 * 109.69932 * 67.53088 * 20 18 17 39 39 H 1.09007 * 109.39958 * 190.97093 * 21 20 18 40 40 H 1.08995 * 109.33668 * 71.18443 * 21 20 18 41 41 H 0.96999 * 117.94754 * 177.79848 * 24 22 21 42 42 H 1.09001 * 115.54902 * 210.58671 * 27 25 24 43 43 H 1.09005 * 117.50112 * 215.00538 * 28 27 25 44 44 H 1.09000 * 117.50159 * 0.03177 * 28 27 25 45 45 H 1.09007 * 117.49928 * 359.97438 * 29 27 25 46 46 H 1.09005 * 117.50151 * 144.99975 * 29 27 25 47 47 H 1.07993 * 120.16271 * 179.72636 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6526 0.7001 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2118 -0.0005 8 1 3.0534 -1.2319 0.2696 9 6 1.3461 -2.4103 -0.3548 10 6 0.2108 -2.3734 -1.1865 11 6 -0.4285 -3.5438 -1.5266 12 6 0.0400 -4.7593 -1.0550 13 6 1.1617 -4.8111 -0.2315 14 7 1.6261 -6.0444 0.2397 15 6 2.9477 -6.2467 0.4095 16 8 3.7424 -5.3933 0.0657 17 7 3.3884 -7.3952 0.9604 18 6 4.8249 -7.6148 1.1454 19 1 5.3140 -6.6703 1.3838 20 6 5.4264 -8.1954 -0.1402 21 6 4.6029 -9.4190 -0.5498 22 6 4.4160 -10.3278 0.6311 23 8 4.0795 -11.4746 0.4251 24 7 4.6006 -9.9413 1.8939 25 6 5.0492 -8.6105 2.2841 26 1 6.1118 -8.6447 2.5246 27 6 4.2661 -8.1540 3.5167 28 6 3.1585 -9.0756 4.0312 29 6 4.4675 -8.9411 4.8131 30 6 1.8145 -3.6456 0.1257 31 1 -0.4850 0.8400 -0.0004 32 1 -0.1583 -1.4282 -1.5562 33 1 -1.2996 -3.5146 -2.1644 34 1 -0.4685 -5.6723 -1.3270 35 1 0.9967 -6.7537 0.4442 36 1 2.7543 -8.0762 1.2344 37 1 6.4598 -8.4919 0.0396 38 1 5.3916 -7.4477 -0.9324 39 1 5.1237 -9.9571 -1.3420 40 1 3.6286 -9.0929 -0.9137 41 1 4.4256 -10.5863 2.5969 42 1 4.1058 -7.0791 3.6003 43 1 2.2694 -8.6070 4.4533 44 1 2.9880 -10.0073 3.4918 45 1 5.1576 -9.7846 4.7877 46 1 4.4398 -8.3841 5.7496 47 1 2.6819 -3.6845 0.7678 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563790658.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:06 Heat of formation + Delta-G solvation = -34.581601 kcal Electronic energy + Delta-G solvation = -30065.934045 eV Core-core repulsion = 26020.210651 eV Total energy + Delta-G solvation = -4045.723394 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.20059 -41.03237 -39.29513 -38.79983 -37.00807 -36.08097 -34.90753 -34.47413 -33.05951 -31.71610 -30.62904 -29.28458 -27.21784 -26.12990 -24.23423 -23.35340 -23.00820 -22.64791 -21.82677 -21.51858 -20.22179 -19.60584 -19.16228 -18.33748 -17.49452 -17.36336 -16.82179 -16.74174 -16.44974 -16.31155 -16.02422 -15.82508 -15.55359 -15.22612 -14.99404 -14.76401 -14.62957 -14.38346 -14.10072 -13.92596 -13.48489 -13.02245 -12.98648 -12.89834 -12.75453 -12.53490 -12.41554 -12.34863 -12.19653 -12.16225 -11.94873 -11.51964 -11.24518 -11.21028 -11.20503 -10.96369 -10.83394 -10.74168 -10.23670 -10.05537 -9.35962 -8.69753 -8.55547 -6.33911 0.95727 1.06709 1.37934 1.50744 1.51632 1.54201 1.67452 2.15912 2.22443 2.24843 2.77453 2.83511 3.25843 3.37976 3.49325 3.57402 3.78004 3.88515 3.98769 4.03506 4.11441 4.32125 4.43121 4.49802 4.55172 4.66562 4.73962 4.79318 4.83624 4.92828 5.03243 5.07561 5.08785 5.14343 5.15806 5.20175 5.22773 5.24588 5.35573 5.49424 5.71847 5.75765 5.86013 6.08225 6.14645 6.20124 6.23011 6.39800 6.72293 6.97715 7.04035 7.09219 7.12907 7.63422 8.35858 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.015558 B = 0.002649 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.281494 B =10566.158817 C =11113.074685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.038 3.962 3 Si 0.980 3.020 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.502 4.502 8 H 0.064 0.936 9 C 0.091 3.909 10 C -0.201 4.201 11 C -0.091 4.091 12 C -0.254 4.254 13 C 0.179 3.821 14 N -0.673 5.673 15 C 0.701 3.299 16 O -0.609 6.609 17 N -0.717 5.717 18 C 0.154 3.846 19 H 0.100 0.900 20 C -0.132 4.132 21 C -0.128 4.128 22 C 0.526 3.474 23 O -0.600 6.600 24 N -0.701 5.701 25 C 0.176 3.824 26 H 0.123 0.877 27 C -0.172 4.172 28 C -0.181 4.181 29 C -0.163 4.163 30 C -0.232 4.232 31 H 0.288 0.712 32 H 0.103 0.897 33 H 0.120 0.880 34 H 0.128 0.872 35 H 0.414 0.586 36 H 0.405 0.595 37 H 0.105 0.895 38 H 0.068 0.932 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.405 0.595 42 H 0.106 0.894 43 H 0.094 0.906 44 H 0.100 0.900 45 H 0.110 0.890 46 H 0.100 0.900 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.221 -17.462 7.232 20.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.177 4.177 3 Si 0.801 3.199 4 H -0.186 1.186 5 H -0.188 1.188 6 H -0.187 1.187 7 C -0.531 4.531 8 H 0.082 0.918 9 C 0.088 3.912 10 C -0.221 4.221 11 C -0.110 4.110 12 C -0.275 4.275 13 C 0.085 3.915 14 N -0.320 5.320 15 C 0.401 3.599 16 O -0.488 6.488 17 N -0.373 5.373 18 C 0.049 3.951 19 H 0.118 0.882 20 C -0.171 4.171 21 C -0.168 4.168 22 C 0.315 3.685 23 O -0.482 6.482 24 N -0.354 5.354 25 C 0.071 3.929 26 H 0.141 0.859 27 C -0.191 4.191 28 C -0.218 4.218 29 C -0.200 4.200 30 C -0.254 4.254 31 H 0.099 0.901 32 H 0.121 0.879 33 H 0.138 0.862 34 H 0.146 0.854 35 H 0.251 0.749 36 H 0.241 0.759 37 H 0.123 0.877 38 H 0.087 0.913 39 H 0.126 0.874 40 H 0.112 0.888 41 H 0.243 0.757 42 H 0.124 0.876 43 H 0.112 0.888 44 H 0.119 0.881 45 H 0.128 0.872 46 H 0.118 0.882 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.657 -17.005 6.711 20.227 hybrid contribution -0.571 0.240 0.476 0.781 sum 8.085 -16.765 7.187 19.952 Atomic orbital electron populations 1.69860 1.08732 1.30456 1.35882 1.26679 0.95559 1.04188 0.91243 0.85239 0.78992 0.76083 0.79582 1.18596 1.18762 1.18718 1.19744 0.97533 0.92655 1.43207 0.91794 1.17813 0.91806 0.92447 0.89110 1.21300 1.00242 0.97477 1.03045 1.20798 0.98854 0.92229 0.99109 1.20420 1.01960 0.97875 1.07283 1.17237 0.95221 0.83470 0.95531 1.42368 1.06165 1.14718 1.68792 1.16071 0.82291 0.82787 0.78731 1.90967 1.55159 1.45806 1.56852 1.44877 1.08408 1.17872 1.66188 1.21210 0.80095 0.99251 0.94566 0.88219 1.22084 1.00573 0.96532 0.97862 1.21536 1.03387 0.95829 0.96067 1.20360 0.75194 0.87691 0.85266 1.90758 1.50049 1.21620 1.85760 1.45657 1.67682 1.14714 1.07367 1.20829 1.00100 0.80274 0.91649 0.85946 1.22551 1.03378 0.98718 0.94453 1.23056 0.93476 1.01368 1.03951 1.23103 0.99426 1.02542 0.94902 1.20926 1.04601 0.91946 1.07947 0.90102 0.87942 0.86185 0.85443 0.74914 0.75944 0.87670 0.91327 0.87371 0.88841 0.75655 0.87588 0.88793 0.88146 0.87212 0.88163 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.88 10.94 21.82 0.24 -43.64 16 2 C 0.04 1.99 5.16 85.25 0.44 2.43 16 3 Si 0.98 39.79 29.59 68.60 2.03 41.82 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 5 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 6 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 7 C -0.50 -28.85 9.05 23.46 0.21 -28.64 16 8 H 0.06 3.69 7.90 -2.91 -0.02 3.66 16 9 C 0.09 5.19 5.57 -21.30 -0.12 5.07 16 10 C -0.20 -10.79 8.69 22.75 0.20 -10.60 16 11 C -0.09 -4.16 10.02 22.20 0.22 -3.94 16 12 C -0.25 -10.60 9.97 22.58 0.23 -10.38 16 13 C 0.18 7.90 6.25 38.10 0.24 8.14 16 14 N -0.67 -22.23 5.34 -317.33 -1.70 -23.92 16 15 C 0.70 22.84 8.27 179.05 1.48 24.32 16 16 O -0.61 -26.15 13.76 -3.98 -0.05 -26.20 16 17 N -0.72 -14.97 3.47 -457.39 -1.59 -16.56 16 18 C 0.15 2.64 2.33 45.08 0.10 2.74 16 19 H 0.10 2.07 7.58 -2.39 -0.02 2.05 16 20 C -0.13 -2.12 5.80 30.73 0.18 -1.95 16 21 C -0.13 -2.17 5.60 29.71 0.17 -2.00 16 22 C 0.53 9.77 7.49 87.72 0.66 10.43 16 23 O -0.60 -16.32 17.78 -3.01 -0.05 -16.37 16 24 N -0.70 -8.71 4.29 -446.64 -1.92 -10.63 16 25 C 0.18 1.93 3.09 45.11 0.14 2.07 16 26 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 27 C -0.17 -2.01 4.95 -10.80 -0.05 -2.06 16 28 C -0.18 -1.98 9.67 30.62 0.30 -1.68 16 29 C -0.16 -1.45 10.05 30.61 0.31 -1.14 16 30 C -0.23 -12.29 8.39 22.85 0.19 -12.10 16 31 H 0.29 13.79 8.30 -92.71 -0.77 13.02 16 32 H 0.10 5.73 6.17 -2.91 -0.02 5.71 16 33 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 34 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 35 H 0.41 10.16 8.84 -92.70 -0.82 9.34 16 36 H 0.40 6.84 8.21 -92.71 -0.76 6.08 16 37 H 0.10 1.19 8.13 -2.39 -0.02 1.17 16 38 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.09 1.75 7.77 -2.39 -0.02 1.73 16 41 H 0.40 4.50 6.68 -92.71 -0.62 3.88 16 42 H 0.11 1.69 8.06 -2.39 -0.02 1.67 16 43 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 44 H 0.10 1.04 6.18 -2.39 -0.01 1.02 16 45 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 46 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 47 H 0.09 4.86 6.48 -2.91 -0.02 4.84 16 Total: -1.00 -74.36 382.09 0.69 -73.67 By element: Atomic # 1 Polarization: 42.27 SS G_CDS: -1.16 Total: 41.11 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: 4.88 Total: -19.28 kcal Atomic # 7 Polarization: -89.79 SS G_CDS: -4.96 Total: -94.75 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -0.11 Total: -42.58 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Total: -74.36 0.69 -73.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563790658.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.091 kcal (2) G-P(sol) polarization free energy of solvation -74.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds