Wall clock time and date at job start Wed Apr 1 2020 03:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86798 * 120.00609 * 2 1 4 4 H 1.48502 * 109.46737 * 274.98863 * 3 2 1 5 5 H 1.48495 * 109.46973 * 34.98340 * 3 2 1 6 6 H 1.48494 * 109.47503 * 154.98851 * 3 2 1 7 7 C 1.39933 * 119.99337 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00014 * 151.92112 * 7 2 1 9 9 C 1.41412 * 120.00164 * 331.90627 * 7 2 1 10 10 C 1.40774 * 120.20763 * 337.89794 * 9 7 2 11 11 C 1.37642 * 119.87933 * 179.97438 * 10 9 7 12 12 C 1.38528 * 120.32523 * 359.71996 * 11 10 9 13 13 C 1.39249 * 120.42567 * 0.55327 * 12 11 10 14 14 N 1.39956 * 119.94562 * 179.72026 * 13 12 11 15 15 C 1.34781 * 120.00088 * 320.99562 * 14 13 12 16 16 O 1.21591 * 120.00098 * 354.64569 * 15 14 13 17 17 N 1.34774 * 119.99973 * 174.64017 * 15 14 13 18 18 C 1.46500 * 119.99963 * 180.02562 * 17 15 14 19 19 H 1.08994 * 110.76659 * 328.19727 * 18 17 15 20 20 C 1.54528 * 110.70374 * 91.39561 * 18 17 15 21 21 C 1.51459 * 104.22607 * 97.74119 * 20 18 17 22 22 O 1.21284 * 125.30870 * 203.18345 * 21 20 18 23 23 N 1.34993 * 109.67953 * 22.88370 * 21 20 18 24 24 C 1.47568 * 127.89956 * 160.87643 * 23 21 20 25 25 C 1.53747 * 106.52909 * 238.36314 * 24 23 21 26 26 C 1.52823 * 109.90715 * 307.22160 * 25 24 23 27 27 C 1.53248 * 110.77663 * 61.55523 * 26 25 24 28 28 C 1.47475 * 110.70320 * 344.82849 * 23 21 20 29 29 H 1.08993 * 110.30532 * 240.92507 * 28 23 21 30 30 C 1.38273 * 120.10516 * 359.45278 * 13 12 11 31 31 H 0.97005 * 119.99572 * 0.02562 * 1 2 3 32 32 H 1.07999 * 120.06092 * 359.94808 * 10 9 7 33 33 H 1.08005 * 119.83648 * 180.02562 * 11 10 9 34 34 H 1.08001 * 119.79325 * 180.29677 * 12 11 10 35 35 H 0.96998 * 120.00024 * 141.00366 * 14 13 12 36 36 H 0.97003 * 120.00307 * 0.02562 * 17 15 14 37 37 H 1.08995 * 110.48366 * 216.43282 * 20 18 17 38 38 H 1.09006 * 110.47942 * 339.05702 * 20 18 17 39 39 H 1.09000 * 110.04308 * 357.61810 * 24 23 21 40 40 H 1.09003 * 110.03581 * 119.00909 * 24 23 21 41 41 H 1.09001 * 109.39820 * 187.08742 * 25 24 23 42 42 H 1.08994 * 109.39384 * 67.35173 * 25 24 23 43 43 H 1.09006 * 109.21204 * 301.21994 * 26 25 24 44 44 H 1.09005 * 109.21523 * 181.89309 * 26 25 24 45 45 H 1.09000 * 109.62604 * 57.72872 * 27 26 25 46 46 H 1.08999 * 109.63216 * 178.11608 * 27 26 25 47 47 H 1.08002 * 120.15684 * 180.25176 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2425 1.6176 0.0000 4 1 2.3845 2.1071 -1.3948 5 1 1.4967 2.6199 0.8027 6 1 3.5887 1.4119 0.5919 7 6 2.0078 -1.2119 -0.0005 8 1 2.9925 -1.2669 -0.4408 9 6 1.4256 -2.3647 0.5756 10 6 0.4021 -2.2377 1.5338 11 6 -0.1602 -3.3643 2.0899 12 6 0.2721 -4.6235 1.7072 13 6 1.2875 -4.7643 0.7647 14 7 1.7205 -6.0412 0.3897 15 6 1.8278 -7.0152 1.3151 16 8 1.6430 -6.7609 2.4897 17 7 2.1399 -8.2711 0.9386 18 6 2.2561 -9.3299 1.9444 19 1 2.6168 -8.9263 2.8905 20 6 0.9027 -10.0502 2.1382 21 6 1.0157 -11.2922 1.2788 22 8 0.0812 -11.9194 0.8270 23 7 2.3171 -11.5940 1.0849 24 6 2.8952 -12.8841 0.6617 25 6 3.8731 -13.3095 1.7692 26 6 4.8594 -12.1777 2.0554 27 6 4.1237 -10.9280 2.5511 28 6 3.1768 -10.4518 1.4471 29 1 3.7459 -10.1168 0.5801 30 6 1.8649 -3.6446 0.1948 31 1 -0.4850 0.8401 -0.0004 32 1 0.0590 -1.2581 1.8323 33 1 -0.9457 -3.2660 2.8246 34 1 -0.1784 -5.5017 2.1455 35 1 1.9434 -6.2253 -0.5362 36 1 2.2877 -8.4740 0.0016 37 1 0.7615 -10.3217 3.1843 38 1 0.0827 -9.4206 1.7926 39 1 2.1069 -13.6290 0.5532 40 1 3.4270 -12.7634 -0.2821 41 1 4.4216 -14.1948 1.4474 42 1 3.3145 -13.5409 2.6760 43 1 5.4025 -11.9356 1.1419 44 1 5.5676 -12.5031 2.8175 45 1 3.5504 -11.1714 3.4457 46 1 4.8462 -10.1449 2.7810 47 1 2.6497 -3.7529 -0.5392 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581927778.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:00 Heat of formation + Delta-G solvation = -62.774906 kcal Electronic energy + Delta-G solvation = -29298.350359 eV Core-core repulsion = 25251.404412 eV Total energy + Delta-G solvation = -4046.945947 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.17371 -41.11350 -39.16972 -38.53022 -36.70056 -35.99205 -34.94472 -34.04720 -32.76109 -31.75998 -30.39233 -29.69065 -27.33778 -27.11098 -24.68201 -23.64589 -22.78145 -22.34247 -21.95974 -21.74778 -20.34687 -19.44087 -19.29407 -17.91934 -17.45975 -17.19604 -16.76433 -16.64609 -16.60020 -16.15454 -15.96147 -15.57293 -15.40797 -15.10920 -14.86605 -14.72877 -14.60865 -14.17797 -14.08099 -13.89569 -13.71302 -13.46484 -13.24263 -13.11130 -12.87579 -12.77632 -12.48104 -12.30913 -12.20411 -11.97768 -11.90830 -11.69208 -11.54990 -11.53680 -11.25445 -11.08963 -11.03273 -10.66824 -10.19623 -9.70361 -9.42671 -8.73487 -8.70067 -6.29821 0.95207 1.01804 1.37644 1.40844 1.49802 1.55623 1.62965 1.91016 2.15335 2.22867 2.72418 3.18114 3.21339 3.35203 3.69778 3.75655 3.88256 3.96198 4.03608 4.13355 4.24217 4.34776 4.43569 4.56195 4.62380 4.66624 4.70401 4.77628 4.88824 4.95496 5.01593 5.04830 5.05598 5.14955 5.16720 5.22233 5.22896 5.32911 5.37284 5.46686 5.55749 5.76395 5.79279 6.02409 6.03437 6.08870 6.18081 6.38821 6.68880 6.93863 6.99150 7.01936 7.07226 7.56729 8.28511 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.025765 B = 0.002025 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.485635 B =13824.990102 C =14322.120670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.045 3.955 3 Si 0.975 3.025 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.501 4.501 8 H 0.081 0.919 9 C 0.098 3.902 10 C -0.205 4.205 11 C -0.093 4.093 12 C -0.240 4.240 13 C 0.189 3.811 14 N -0.674 5.674 15 C 0.704 3.296 16 O -0.608 6.608 17 N -0.722 5.722 18 C 0.164 3.836 19 H 0.118 0.882 20 C -0.165 4.165 21 C 0.521 3.479 22 O -0.576 6.576 23 N -0.619 5.619 24 C 0.124 3.876 25 C -0.131 4.131 26 C -0.116 4.116 27 C -0.126 4.126 28 C 0.130 3.870 29 H 0.110 0.890 30 C -0.260 4.260 31 H 0.291 0.709 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.415 0.585 36 H 0.411 0.589 37 H 0.128 0.872 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.091 0.909 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.483 -22.234 1.045 25.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.173 4.173 3 Si 0.795 3.205 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.529 4.529 8 H 0.099 0.901 9 C 0.095 3.905 10 C -0.225 4.225 11 C -0.112 4.112 12 C -0.262 4.262 13 C 0.095 3.905 14 N -0.322 5.322 15 C 0.405 3.595 16 O -0.486 6.486 17 N -0.378 5.378 18 C 0.058 3.942 19 H 0.136 0.864 20 C -0.207 4.207 21 C 0.311 3.689 22 O -0.456 6.456 23 N -0.353 5.353 24 C 0.004 3.996 25 C -0.170 4.170 26 C -0.153 4.153 27 C -0.165 4.165 28 C 0.026 3.974 29 H 0.128 0.872 30 C -0.282 4.282 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.126 0.874 34 H 0.116 0.884 35 H 0.252 0.748 36 H 0.248 0.752 37 H 0.146 0.854 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.089 0.911 46 H 0.110 0.890 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.632 -22.355 1.769 24.818 hybrid contribution -0.201 0.667 -0.828 1.082 sum 10.431 -21.688 0.941 24.085 Atomic orbital electron populations 1.69934 1.09383 1.31071 1.32955 1.26759 0.95164 1.04597 0.90790 0.85318 0.79517 0.76144 0.79525 1.18400 1.19165 1.18253 1.19730 1.03336 0.93981 1.35890 0.90142 1.17692 0.90611 0.92459 0.89702 1.21106 1.03065 0.96874 1.01448 1.20744 0.98914 0.92590 0.98919 1.20328 1.02943 0.96230 1.06672 1.17129 0.93599 0.82730 0.97059 1.42402 1.69787 1.08503 1.11527 1.15996 0.77770 0.81030 0.84689 1.90938 1.57780 1.82302 1.17624 1.44947 1.75817 1.05734 1.11345 1.21352 0.93658 0.85846 0.93376 0.86390 1.22883 1.00218 0.95313 1.02285 1.21284 0.82506 0.85946 0.79190 1.90693 1.43193 1.58668 1.53031 1.49045 1.05620 1.14164 1.66501 1.22013 0.96716 0.82365 0.98487 1.21988 0.97247 0.99486 0.98231 1.21473 0.97595 0.93746 1.02511 1.22002 0.98240 0.99226 0.97033 1.22059 0.91131 0.84171 1.00056 0.87186 1.20793 1.07457 0.91139 1.08832 0.89844 0.88729 0.87432 0.88400 0.74778 0.75203 0.85428 0.89424 0.90744 0.89217 0.88732 0.92327 0.90663 0.90222 0.91115 0.89026 0.87308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.92 11.48 21.82 0.25 -41.67 16 2 C 0.04 2.23 4.90 85.25 0.42 2.64 16 3 Si 0.97 37.36 29.64 68.60 2.03 39.39 16 4 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 5 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 6 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 7 C -0.50 -26.63 8.99 23.46 0.21 -26.41 16 8 H 0.08 4.09 7.98 -2.91 -0.02 4.06 16 9 C 0.10 5.32 5.57 -21.31 -0.12 5.20 16 10 C -0.21 -11.07 8.75 22.75 0.20 -10.87 16 11 C -0.09 -4.61 10.02 22.20 0.22 -4.38 16 12 C -0.24 -11.50 8.66 22.58 0.20 -11.30 16 13 C 0.19 8.39 6.15 38.10 0.23 8.63 16 14 N -0.67 -22.46 5.33 -317.32 -1.69 -24.15 16 15 C 0.70 22.36 8.26 179.05 1.48 23.84 16 16 O -0.61 -24.63 14.07 -4.00 -0.06 -24.68 16 17 N -0.72 -14.80 5.06 -454.66 -2.30 -17.10 16 18 C 0.16 2.88 3.09 45.65 0.14 3.02 16 19 H 0.12 2.27 7.23 -2.39 -0.02 2.25 16 20 C -0.17 -3.42 6.65 30.61 0.20 -3.21 16 21 C 0.52 12.04 8.08 87.86 0.71 12.75 16 22 O -0.58 -18.59 17.86 -3.04 -0.05 -18.64 16 23 N -0.62 -9.55 2.99 -789.18 -2.36 -11.91 16 24 C 0.12 1.41 6.99 86.43 0.60 2.01 16 25 C -0.13 -0.95 6.06 30.79 0.19 -0.76 16 26 C -0.12 -0.69 5.77 30.62 0.18 -0.51 16 27 C -0.13 -1.07 5.36 30.69 0.16 -0.91 16 28 C 0.13 1.51 3.25 44.96 0.15 1.66 16 29 H 0.11 0.96 7.85 -2.39 -0.02 0.94 16 30 C -0.26 -12.55 9.71 22.85 0.22 -12.32 16 31 H 0.29 13.51 8.30 -92.70 -0.77 12.74 16 32 H 0.09 5.26 6.38 -2.91 -0.02 5.24 16 33 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 34 H 0.10 4.62 6.82 -2.91 -0.02 4.60 16 35 H 0.42 10.56 8.84 -92.71 -0.82 9.74 16 36 H 0.41 6.08 8.53 -92.71 -0.79 5.29 16 37 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.09 2.22 8.05 -2.38 -0.02 2.20 16 39 H 0.07 1.07 8.02 -2.39 -0.02 1.05 16 40 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.07 0.35 8.14 -2.38 -0.02 0.33 16 44 H 0.08 0.37 8.14 -2.38 -0.02 0.35 16 45 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -73.79 383.26 0.62 -73.17 By element: Atomic # 1 Polarization: 37.13 SS G_CDS: -0.60 Total: 36.53 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: 5.40 Total: -10.93 kcal Atomic # 7 Polarization: -88.74 SS G_CDS: -6.10 Total: -94.84 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: -0.11 Total: -43.32 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 2.03 Total: 39.39 kcal Total: -73.79 0.62 -73.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581927778.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.396 kcal (2) G-P(sol) polarization free energy of solvation -73.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds