Wall clock time and date at job start Wed Apr 1 2020 01:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 O 1.42901 * 110.27464 * 57.91490 * 9 7 2 11 11 C 1.54595 * 110.31131 * 295.71695 * 9 7 2 12 12 C 1.54942 * 102.91828 * 219.12946 * 11 9 7 13 13 N 1.48530 * 103.23043 * 37.41654 * 12 11 9 14 14 C 1.46896 * 110.99709 * 200.27905 * 13 12 11 15 15 C 1.52993 * 109.47157 * 287.39135 * 14 13 12 16 16 C 1.53006 * 109.47225 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.47057 * 180.02562 * 16 15 14 18 18 N 1.30975 * 126.44408 * 90.00203 * 17 16 15 19 19 C 1.35211 * 105.58189 * 179.97438 * 18 17 16 20 20 C 1.48426 * 126.41152 * 179.97438 * 19 18 17 21 21 C 1.39321 * 120.11982 * 359.72462 * 20 19 18 22 22 C 1.38021 * 119.87743 * 179.70090 * 21 20 19 23 23 C 1.38325 * 120.12292 * 0.57786 * 22 21 20 24 24 C 1.38327 * 120.23473 * 359.72302 * 23 22 21 25 25 C 1.38022 * 120.12207 * 359.97249 * 24 23 22 26 26 N 1.30758 * 107.17525 * 0.02562 * 19 18 17 27 27 O 1.21293 * 110.09794 * 359.74483 * 26 19 18 28 28 C 1.47906 * 105.81807 * 320.78782 * 13 12 11 29 29 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 30 30 H 0.96702 * 113.99960 * 300.69820 * 10 9 7 31 31 H 1.08993 * 110.72523 * 337.48628 * 11 9 7 32 32 H 1.09004 * 110.72137 * 100.77177 * 11 9 7 33 33 H 1.09003 * 110.66425 * 278.97335 * 12 11 9 34 34 H 1.09003 * 110.80581 * 155.92323 * 12 11 9 35 35 H 1.08998 * 109.47321 * 47.39763 * 14 13 12 36 36 H 1.09001 * 109.47137 * 167.39118 * 14 13 12 37 37 H 1.08998 * 109.47519 * 300.00507 * 15 14 13 38 38 H 1.09002 * 109.47453 * 60.00665 * 15 14 13 39 39 H 1.08998 * 109.47131 * 300.00554 * 16 15 14 40 40 H 1.09003 * 109.46922 * 60.00560 * 16 15 14 41 41 H 1.07998 * 120.06471 * 0.02562 * 21 20 19 42 42 H 1.08006 * 119.94489 * 180.32065 * 22 21 20 43 43 H 1.07994 * 119.88159 * 179.74620 * 23 22 21 44 44 H 1.08003 * 119.93770 * 180.02562 * 24 23 22 45 45 H 1.07996 * 120.05638 * 180.02562 * 25 24 23 46 46 H 1.08999 * 109.92231 * 265.97917 * 28 13 12 47 47 H 1.09002 * 109.91823 * 144.68135 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 8 0.3820 -2.5742 -1.1267 11 6 0.4434 -2.6467 1.3152 12 6 0.6096 -4.1487 1.6573 13 7 2.0112 -4.4352 1.2579 14 6 2.2162 -5.8753 1.0530 15 6 2.2237 -6.5872 2.4072 16 6 2.4378 -8.0870 2.1937 17 6 2.4446 -8.7883 3.5276 18 7 1.4059 -9.2895 4.1483 19 6 1.8879 -9.8144 5.2974 20 6 1.0997 -10.5012 6.3510 21 6 -0.2782 -10.6496 6.2084 22 6 -1.0054 -11.2946 7.1883 23 6 -0.3704 -11.7826 8.3161 24 6 0.9965 -11.6323 8.4657 25 6 1.7343 -10.9946 7.4890 26 7 3.1781 -9.6027 5.3072 27 8 3.5126 -9.0198 4.2974 28 6 2.2345 -3.6842 0.0034 29 1 -0.4850 0.8401 0.0004 30 1 -0.2737 -1.8646 -1.1668 31 1 0.8671 -2.0227 2.1019 32 1 -0.6061 -2.4023 1.1508 33 1 -0.0871 -4.7546 1.0780 34 1 0.4709 -4.3203 2.7248 35 1 1.4093 -6.2732 0.4377 36 1 3.1700 -6.0387 0.5513 37 1 3.0306 -6.1892 3.0225 38 1 1.2698 -6.4238 2.9088 39 1 1.6312 -8.4853 1.5783 40 1 3.3919 -8.2501 1.6923 41 1 -0.7758 -10.2654 5.3302 42 1 -2.0729 -11.4148 7.0764 43 1 -0.9438 -12.2829 9.0823 44 1 1.4875 -12.0156 9.3481 45 1 2.8015 -10.8782 7.6067 46 1 2.0391 -4.3276 -0.8544 47 1 3.2598 -3.3157 -0.0313 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592147979.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:23 Heat of formation + Delta-G solvation = 21.986319 kcal Electronic energy + Delta-G solvation = -28376.092134 eV Core-core repulsion = 24332.821710 eV Total energy + Delta-G solvation = -4043.270425 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -46.65862 -40.15169 -40.13443 -37.43728 -36.86102 -35.60123 -34.10724 -33.38910 -32.00396 -31.71819 -30.76332 -29.81770 -27.62399 -25.96920 -25.82463 -24.32193 -23.23373 -23.07284 -21.88428 -21.53914 -21.18451 -19.21188 -19.07950 -18.92292 -17.67161 -17.11269 -16.89346 -16.64180 -16.30358 -16.13215 -15.93969 -15.72673 -15.31324 -14.82778 -14.62497 -14.43185 -14.31425 -14.23203 -13.94564 -13.82155 -13.47720 -13.38692 -13.16390 -13.01303 -12.76046 -12.69000 -12.50270 -12.39907 -12.38074 -12.29093 -12.19160 -11.99741 -11.96545 -11.83277 -11.55237 -11.29576 -11.03456 -10.58047 -10.07825 -10.00595 -9.72956 -9.28739 -8.20134 -6.33019 -0.39913 0.27930 0.35620 1.35917 1.41266 1.43230 1.52788 1.74117 2.39981 2.40867 2.79641 2.85125 3.01216 3.16856 3.72628 3.90150 3.95625 3.97426 4.01974 4.11936 4.13258 4.21113 4.30046 4.38531 4.42681 4.47400 4.52743 4.56584 4.59451 4.67890 4.72530 4.75358 4.82588 4.88339 4.92351 5.02627 5.10018 5.17767 5.23859 5.32556 5.39352 5.43516 5.44475 5.47405 5.62490 5.79654 5.90270 6.01745 6.18233 6.31060 6.71710 7.02382 7.36848 7.47094 8.85967 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.019863 B = 0.001748 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.288658 B =16011.590650 C =16403.768077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.025 3.975 3 Si 0.959 3.041 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.552 4.552 8 H 0.055 0.945 9 C 0.224 3.776 10 O -0.601 6.601 11 C -0.113 4.113 12 C 0.043 3.957 13 N -0.521 5.521 14 C 0.048 3.952 15 C -0.100 4.100 16 C -0.020 4.020 17 C 0.204 3.796 18 N -0.497 5.497 19 C 0.202 3.798 20 C -0.052 4.052 21 C -0.089 4.089 22 C -0.123 4.123 23 C -0.096 4.096 24 C -0.122 4.122 25 C -0.098 4.098 26 N -0.399 5.399 27 O 0.077 5.923 28 C 0.064 3.936 29 H 0.268 0.732 30 H 0.377 0.623 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.040 0.960 34 H 0.081 0.919 35 H 0.043 0.957 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.126 0.874 40 H 0.137 0.863 41 H 0.129 0.871 42 H 0.155 0.845 43 H 0.160 0.840 44 H 0.156 0.844 45 H 0.125 0.875 46 H 0.040 0.960 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.482 -24.306 12.955 27.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.174 4.174 3 Si 0.784 3.216 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.590 4.590 8 H 0.073 0.927 9 C 0.184 3.816 10 O -0.411 6.411 11 C -0.152 4.152 12 C -0.084 4.084 13 N -0.246 5.246 14 C -0.080 4.080 15 C -0.139 4.139 16 C -0.059 4.059 17 C -0.016 4.016 18 N -0.230 5.230 19 C -0.068 4.068 20 C -0.054 4.054 21 C -0.108 4.108 22 C -0.141 4.141 23 C -0.114 4.114 24 C -0.140 4.140 25 C -0.118 4.118 26 N -0.108 5.108 27 O 0.018 5.982 28 C -0.064 4.064 29 H 0.078 0.922 30 H 0.227 0.773 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.061 0.939 36 H 0.111 0.889 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.144 0.856 40 H 0.155 0.845 41 H 0.147 0.853 42 H 0.173 0.827 43 H 0.178 0.822 44 H 0.173 0.827 45 H 0.143 0.857 46 H 0.059 0.941 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.196 -24.913 13.907 28.557 hybrid contribution -0.482 1.711 -0.788 1.944 sum 0.714 -23.202 13.119 26.663 Atomic orbital electron populations 1.69699 1.06818 1.28049 1.51114 1.25705 0.95844 1.02298 0.93597 0.85548 0.78713 0.79142 0.78152 1.20189 1.20763 1.19590 1.21988 0.93481 0.92155 1.51369 0.92662 1.19654 0.86796 0.92462 0.82700 1.86072 1.50742 1.54846 1.49416 1.22776 0.99109 0.94223 0.99123 1.23195 0.89016 0.95978 1.00225 1.64711 1.22964 1.08198 1.28685 1.22303 1.02385 0.86809 0.96523 1.21387 1.02952 0.91785 0.97771 1.20456 1.08392 0.92810 0.84228 1.29338 0.79935 0.94620 0.97714 1.72003 1.29261 1.15969 1.05750 1.24352 0.87996 0.99822 0.94621 1.17623 0.93165 1.02103 0.92468 1.21344 0.91851 0.97556 1.00096 1.21491 1.01528 0.97554 0.93501 1.21787 0.94669 0.97207 0.97751 1.21449 0.94720 0.98646 0.99162 1.21309 1.00610 0.97133 0.92728 1.74844 1.15684 1.15420 1.04811 1.85255 1.36615 1.53973 1.22324 1.22653 0.99207 0.94224 0.90297 0.92243 0.77262 0.93691 0.93521 0.94151 0.90090 0.93865 0.88861 0.90762 0.92333 0.85567 0.84547 0.85259 0.82718 0.82192 0.82654 0.85688 0.94139 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.55 10.89 21.45 0.23 -49.31 16 2 C 0.03 1.34 5.27 84.66 0.45 1.79 16 3 Si 0.96 42.69 29.54 68.60 2.03 44.72 16 4 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 7 C -0.55 -29.88 8.10 25.60 0.21 -29.67 16 8 H 0.06 2.98 7.34 -2.92 -0.02 2.96 16 9 C 0.22 11.11 0.99 -10.66 -0.01 11.10 16 10 O -0.60 -31.54 12.92 -148.98 -1.93 -33.47 16 11 C -0.11 -5.29 5.50 31.80 0.17 -5.11 16 12 C 0.04 1.61 5.91 86.65 0.51 2.13 16 13 N -0.52 -18.37 5.24 -883.00 -4.63 -23.00 16 14 C 0.05 1.18 4.70 86.30 0.41 1.59 16 15 C -0.10 -2.06 5.29 30.59 0.16 -1.90 16 16 C -0.02 -0.29 5.84 29.85 0.17 -0.12 16 17 C 0.20 4.39 7.75 88.36 0.68 5.07 16 18 N -0.50 -12.67 11.26 -302.50 -3.41 -16.07 16 19 C 0.20 5.31 7.80 137.30 1.07 6.38 16 20 C -0.05 -1.17 5.88 -20.04 -0.12 -1.29 16 21 C -0.09 -1.69 9.70 22.48 0.22 -1.47 16 22 C -0.12 -1.61 10.03 22.24 0.22 -1.38 16 23 C -0.10 -1.01 10.04 22.31 0.22 -0.79 16 24 C -0.12 -1.55 10.03 22.24 0.22 -1.33 16 25 C -0.10 -1.83 9.69 22.48 0.22 -1.61 16 26 N -0.40 -10.73 11.86 -59.13 -0.70 -11.43 16 27 O 0.08 1.85 11.29 74.54 0.84 2.69 16 28 C 0.06 2.67 6.13 86.45 0.53 3.20 16 29 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 30 H 0.38 20.39 7.07 -74.06 -0.52 19.86 16 31 H 0.04 2.25 7.86 -2.39 -0.02 2.23 16 32 H 0.05 2.28 8.06 -2.39 -0.02 2.26 16 33 H 0.04 1.45 7.81 -2.39 -0.02 1.43 16 34 H 0.08 2.72 7.80 -2.39 -0.02 2.71 16 35 H 0.04 1.04 7.83 -2.39 -0.02 1.02 16 36 H 0.09 1.98 8.08 -2.39 -0.02 1.96 16 37 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.06 1.38 7.37 -2.39 -0.02 1.36 16 39 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.13 2.52 7.88 -2.91 -0.02 2.50 16 42 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 43 H 0.16 0.64 8.06 -2.91 -0.02 0.62 16 44 H 0.16 1.09 8.06 -2.91 -0.02 1.06 16 45 H 0.13 2.35 7.87 -2.91 -0.02 2.32 16 46 H 0.04 1.63 7.59 -2.39 -0.02 1.61 16 47 H 0.07 3.14 7.39 -2.39 -0.02 3.12 16 Total: -1.00 -66.09 389.85 -1.75 -67.84 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: 0.46 Total: 31.45 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: 5.35 Total: -13.42 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -8.50 Total: -99.82 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -1.08 Total: -30.77 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -66.09 -1.75 -67.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147979.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.825 kcal (2) G-P(sol) polarization free energy of solvation -66.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds