Wall clock time and date at job start Wed Apr 1 2020 01:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00187 * 2 1 4 4 H 1.48502 * 109.46996 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.46664 * 120.00046 * 3 2 1 6 6 H 1.48490 * 109.47479 * 239.99925 * 3 2 1 7 7 C 1.38817 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99730 * 155.49053 * 7 2 1 9 9 N 1.36940 * 119.99931 * 335.49820 * 7 2 1 10 10 C 1.46924 * 120.62840 * 331.81335 * 9 7 2 11 11 C 1.52765 * 109.00726 * 233.58467 * 10 9 7 12 12 C 1.53038 * 109.38424 * 305.59230 * 11 10 9 13 13 N 1.46498 * 109.46144 * 181.25955 * 12 11 10 14 14 C 1.33793 * 124.17802 * 299.62914 * 13 12 11 15 15 O 1.21540 * 123.76840 * 0.03902 * 14 13 12 16 16 N 1.34527 * 112.46189 * 179.86148 * 14 13 12 17 17 C 1.47314 * 106.61627 * 0.38541 * 16 14 13 18 18 H 1.08999 * 110.73080 * 118.36418 * 17 16 14 19 19 C 1.53002 * 110.60060 * 241.25237 * 17 16 14 20 20 C 1.50702 * 109.46590 * 289.17299 * 19 17 16 21 21 C 1.38230 * 119.99899 * 269.72284 * 20 19 17 22 22 C 1.38237 * 120.00080 * 179.74598 * 21 20 19 23 23 C 1.38236 * 119.99635 * 0.55526 * 22 21 20 24 24 C 1.38227 * 120.00140 * 359.69953 * 23 22 21 25 25 C 1.38235 * 119.99809 * 90.00226 * 20 19 17 26 26 C 1.34762 * 124.18080 * 119.92876 * 13 12 11 27 27 O 1.21237 * 127.15791 * 359.97438 * 26 13 12 28 28 C 1.53043 * 109.53784 * 61.24001 * 12 11 10 29 29 C 1.46924 * 120.62954 * 152.09633 * 9 7 2 30 30 H 0.97008 * 119.99855 * 174.23671 * 1 2 3 31 31 H 1.08997 * 109.58881 * 353.41746 * 10 9 7 32 32 H 1.08995 * 109.58530 * 113.84827 * 10 9 7 33 33 H 1.08999 * 109.56541 * 185.55449 * 11 10 9 34 34 H 1.09003 * 109.38272 * 65.51777 * 11 10 9 35 35 H 1.09000 * 109.45804 * 301.21593 * 12 11 10 36 36 H 0.96994 * 126.69375 * 180.20060 * 16 14 13 37 37 H 1.08999 * 109.46798 * 49.16721 * 19 17 16 38 38 H 1.08997 * 109.47332 * 169.17448 * 19 17 16 39 39 H 1.08000 * 120.00083 * 0.02562 * 21 20 19 40 40 H 1.07997 * 120.00272 * 180.27447 * 22 21 20 41 41 H 1.08004 * 120.00036 * 179.72432 * 23 22 21 42 42 H 1.07998 * 120.00200 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.00205 * 359.97438 * 25 20 19 44 44 H 1.09005 * 109.49682 * 178.68571 * 28 12 11 45 45 H 1.08993 * 109.52429 * 58.60461 * 28 12 11 46 46 H 1.09002 * 109.58713 * 246.15232 * 29 9 7 47 47 H 1.09003 * 109.58661 * 6.43566 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1039 1.6962 1.2125 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0172 -1.2442 -0.3886 9 7 1.4180 -2.3349 0.4908 10 6 0.3871 -2.2483 1.5341 11 6 0.7853 -3.1480 2.7028 12 6 1.0413 -4.5662 2.1878 13 7 1.3941 -5.4373 3.3116 14 6 2.4541 -5.2477 4.1057 15 8 3.2384 -4.3282 3.9774 16 7 2.5526 -6.1864 5.0643 17 6 1.4213 -7.1093 4.8680 18 1 1.7780 -8.1163 4.6515 19 6 0.5115 -7.1151 6.0982 20 6 1.2144 -7.8041 7.2394 21 6 1.0690 -9.1670 7.4187 22 6 1.7179 -9.8000 8.4624 23 6 2.5030 -9.0681 9.3335 24 6 2.6442 -7.7044 9.1573 25 6 1.9999 -7.0723 8.1102 26 6 0.6942 -6.5318 3.6698 27 8 -0.3083 -6.9648 3.1431 28 6 2.1920 -4.5444 1.1790 29 6 1.8057 -3.6603 -0.0110 30 1 -0.4850 -0.8359 -0.0844 31 1 0.3030 -1.2181 1.8801 32 1 -0.5696 -2.5799 1.1309 33 1 -0.0186 -3.1677 3.4386 34 1 1.6926 -2.7596 3.1656 35 1 0.1411 -4.9448 1.7038 36 1 3.2367 -6.2456 5.7493 37 1 0.2778 -6.0890 6.3819 38 1 -0.4109 -7.6469 5.8654 39 1 0.4520 -9.7381 6.7407 40 1 1.6079 -10.8655 8.5998 41 1 3.0064 -9.5618 10.1515 42 1 3.2572 -7.1325 9.8381 43 1 2.1102 -6.0068 7.9725 44 1 2.3892 -5.5581 0.8301 45 1 3.0865 -4.1430 1.6552 46 1 0.9669 -4.1094 -0.5429 47 1 2.6556 -3.5611 -0.6863 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617679306.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:10 Heat of formation + Delta-G solvation = 1.560714 kcal Electronic energy + Delta-G solvation = -30248.137457 eV Core-core repulsion = 26203.981312 eV Total energy + Delta-G solvation = -4044.156145 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.54070 -39.69756 -38.58606 -37.82513 -36.28083 -35.04757 -33.28820 -32.12566 -31.30745 -30.36251 -29.43998 -29.11661 -25.62787 -24.76237 -23.28044 -22.94696 -22.40832 -22.22146 -21.35868 -20.38062 -19.09457 -18.10707 -17.45830 -17.36955 -16.77012 -16.19950 -15.85554 -15.58858 -15.53408 -15.11792 -14.47643 -14.34391 -14.12093 -14.00302 -13.93160 -13.78026 -13.47754 -13.38716 -13.34170 -13.06316 -12.70696 -12.55001 -12.28948 -11.73368 -11.64824 -11.49492 -11.38825 -11.00689 -10.68092 -10.52145 -10.43463 -10.40638 -10.24818 -10.00967 -9.83800 -9.70073 -9.34343 -9.31619 -9.24350 -9.10609 -8.34790 -6.88300 -6.04197 -3.20465 0.86716 0.97640 1.57461 2.23401 2.98539 3.06566 3.35111 3.53186 3.57759 3.74955 3.78076 4.32593 4.39417 4.45760 4.59658 4.62593 4.63443 4.73961 4.97025 4.99541 5.08770 5.22115 5.26765 5.31496 5.36431 5.38844 5.49533 5.60810 5.61637 5.63250 5.66388 5.94537 6.04142 6.10909 6.13139 6.16935 6.27662 6.36368 6.44508 6.53064 6.57126 6.64813 6.68903 6.84665 7.02516 7.10728 7.26111 7.34162 8.03959 8.17533 8.60124 9.13097 9.86762 10.30056 11.24775 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.022659 B = 0.002464 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.418507 B =11362.915961 C =11885.156332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.024 4.024 3 Si 1.064 2.936 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.347 4.347 8 H 0.056 0.944 9 N -0.597 5.597 10 C 0.156 3.844 11 C -0.147 4.147 12 C 0.157 3.843 13 N -0.568 5.568 14 C 0.699 3.301 15 O -0.525 6.525 16 N -0.729 5.729 17 C 0.100 3.900 18 H 0.125 0.875 19 C -0.081 4.081 20 C -0.085 4.085 21 C -0.113 4.113 22 C -0.118 4.118 23 C -0.121 4.121 24 C -0.117 4.117 25 C -0.115 4.115 26 C 0.523 3.477 27 O -0.471 6.471 28 C -0.145 4.145 29 C 0.153 3.847 30 H 0.268 0.732 31 H 0.085 0.915 32 H 0.019 0.981 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.436 0.564 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.052 0.948 45 H 0.081 0.919 46 H 0.019 0.981 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.924 -20.998 18.141 27.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.226 4.226 3 Si 0.894 3.106 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.476 4.476 8 H 0.074 0.926 9 N -0.320 5.320 10 C 0.029 3.971 11 C -0.187 4.187 12 C 0.057 3.943 13 N -0.313 5.313 14 C 0.400 3.600 15 O -0.396 6.396 16 N -0.395 5.395 17 C -0.009 4.009 18 H 0.142 0.858 19 C -0.119 4.119 20 C -0.085 4.085 21 C -0.131 4.131 22 C -0.136 4.136 23 C -0.140 4.140 24 C -0.135 4.135 25 C -0.133 4.133 26 C 0.309 3.691 27 O -0.341 6.341 28 C -0.185 4.185 29 C 0.026 3.974 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.116 0.884 36 H 0.280 0.720 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.071 0.929 45 H 0.100 0.900 46 H 0.037 0.963 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.595 -18.964 17.705 26.073 hybrid contribution 0.563 -1.955 0.370 2.067 sum 3.158 -20.918 18.075 27.825 Atomic orbital electron populations 1.70791 1.06562 1.30283 1.48049 1.25855 0.96542 1.01460 0.98732 0.83539 0.74799 0.76024 0.76254 1.21113 1.22008 1.21969 1.19967 0.97263 0.88283 1.42060 0.92583 1.44113 1.45834 1.01429 1.40654 1.20838 0.90507 0.98984 0.86799 1.22452 1.02213 0.93705 1.00286 1.21436 0.99227 0.89896 0.83740 1.46869 1.26089 1.27233 1.31150 1.15962 0.81555 0.82721 0.79802 1.91052 1.43873 1.31992 1.72721 1.45628 1.30646 1.28659 1.34528 1.22027 0.87946 0.96446 0.94529 0.85765 1.20798 0.97641 1.02706 0.90748 1.19698 0.98336 0.93925 0.96520 1.21116 0.99796 0.93928 0.98251 1.21174 0.97250 0.99994 0.95181 1.21206 0.98966 0.94363 0.99415 1.21194 0.99544 0.94856 0.97901 1.21152 0.97091 1.00070 0.94981 1.20789 0.83631 0.80306 0.84393 1.90798 1.22197 1.63215 1.57873 1.22455 0.98583 0.99815 0.97671 1.20833 0.97904 0.86143 0.92519 0.92057 0.89629 0.96276 0.92929 0.90136 0.88403 0.71970 0.89420 0.88164 0.85694 0.85959 0.86101 0.85895 0.85809 0.92911 0.89997 0.96326 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.62 12.42 55.49 0.69 -26.93 16 2 C -0.02 -0.69 4.70 -17.43 -0.08 -0.77 16 3 Si 1.06 25.72 29.98 -169.99 -5.10 20.62 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.35 -9.84 9.49 -15.06 -0.14 -9.99 16 8 H 0.06 1.60 7.94 -52.49 -0.42 1.19 16 9 N -0.60 -15.23 2.85 -172.58 -0.49 -15.72 16 10 C 0.16 3.70 4.66 -3.93 -0.02 3.68 16 11 C -0.15 -2.93 5.33 -26.83 -0.14 -3.07 16 12 C 0.16 2.80 2.60 -67.89 -0.18 2.62 16 13 N -0.57 -8.55 2.51 -113.55 -0.28 -8.84 16 14 C 0.70 10.32 8.04 -88.02 -0.71 9.61 16 15 O -0.52 -9.87 14.91 5.33 0.08 -9.79 16 16 N -0.73 -7.25 6.04 -59.19 -0.36 -7.61 16 17 C 0.10 0.88 3.63 -68.20 -0.25 0.63 16 18 H 0.12 0.86 8.14 -51.93 -0.42 0.43 16 19 C -0.08 -0.60 5.09 -27.88 -0.14 -0.74 16 20 C -0.08 -0.59 5.04 -104.63 -0.53 -1.11 16 21 C -0.11 -0.72 9.70 -39.58 -0.38 -1.11 16 22 C -0.12 -0.71 10.05 -39.58 -0.40 -1.11 16 23 C -0.12 -0.74 10.05 -39.59 -0.40 -1.14 16 24 C -0.12 -0.75 10.05 -39.58 -0.40 -1.15 16 25 C -0.11 -0.80 9.13 -39.58 -0.36 -1.16 16 26 C 0.52 6.78 7.66 -10.56 -0.08 6.70 16 27 O -0.47 -7.18 17.51 5.59 0.10 -7.08 16 28 C -0.15 -2.71 5.33 -26.61 -0.14 -2.86 16 29 C 0.15 3.29 6.52 -3.71 -0.02 3.27 16 30 H 0.27 8.12 6.69 -40.82 -0.27 7.85 16 31 H 0.09 2.28 6.32 -51.93 -0.33 1.95 16 32 H 0.02 0.46 7.86 -51.93 -0.41 0.05 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 1.78 6.77 -51.93 -0.35 1.43 16 35 H 0.10 1.76 7.63 -51.93 -0.40 1.36 16 36 H 0.44 3.50 8.49 -40.82 -0.35 3.15 16 37 H 0.09 0.70 8.09 -51.93 -0.42 0.28 16 38 H 0.10 0.69 8.08 -51.93 -0.42 0.27 16 39 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 40 H 0.12 0.52 8.06 -52.49 -0.42 0.10 16 41 H 0.12 0.52 8.06 -52.48 -0.42 0.10 16 42 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 43 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.08 1.71 6.73 -51.93 -0.35 1.36 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 1.33 7.93 -51.93 -0.41 0.92 16 LS Contribution 379.97 15.07 5.73 5.73 Total: -1.00 -33.87 379.97 -10.73 -44.60 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.72 Total: 2.71 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -4.37 Total: 2.30 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.45 Total: -59.10 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: 0.18 Total: -16.87 kcal Atomic # 14 Polarization: 25.72 SS G_CDS: -5.10 Total: 20.62 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.87 -10.73 -44.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617679306.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.160 kcal (2) G-P(sol) polarization free energy of solvation -33.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds