Wall clock time and date at job start Wed Apr 1 2020 01:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00187 * 2 1 4 4 H 1.48502 * 109.46996 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.46664 * 120.00046 * 3 2 1 6 6 H 1.48490 * 109.47479 * 239.99925 * 3 2 1 7 7 C 1.38817 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99730 * 155.49053 * 7 2 1 9 9 N 1.36940 * 119.99931 * 335.49820 * 7 2 1 10 10 C 1.46924 * 120.62840 * 331.81335 * 9 7 2 11 11 C 1.52765 * 109.00726 * 233.58467 * 10 9 7 12 12 C 1.53038 * 109.38424 * 305.59230 * 11 10 9 13 13 N 1.46498 * 109.46144 * 181.25955 * 12 11 10 14 14 C 1.33793 * 124.17802 * 299.62914 * 13 12 11 15 15 O 1.21540 * 123.76840 * 0.03902 * 14 13 12 16 16 N 1.34527 * 112.46189 * 179.86148 * 14 13 12 17 17 C 1.47314 * 106.61627 * 0.38541 * 16 14 13 18 18 H 1.08999 * 110.73080 * 118.36418 * 17 16 14 19 19 C 1.53002 * 110.60060 * 241.25237 * 17 16 14 20 20 C 1.50702 * 109.46590 * 289.17299 * 19 17 16 21 21 C 1.38230 * 119.99899 * 269.72284 * 20 19 17 22 22 C 1.38237 * 120.00080 * 179.74598 * 21 20 19 23 23 C 1.38236 * 119.99635 * 0.55526 * 22 21 20 24 24 C 1.38227 * 120.00140 * 359.69953 * 23 22 21 25 25 C 1.38235 * 119.99809 * 90.00226 * 20 19 17 26 26 C 1.34762 * 124.18080 * 119.92876 * 13 12 11 27 27 O 1.21237 * 127.15791 * 359.97438 * 26 13 12 28 28 C 1.53043 * 109.53784 * 61.24001 * 12 11 10 29 29 C 1.46924 * 120.62954 * 152.09633 * 9 7 2 30 30 H 0.97008 * 119.99855 * 174.23671 * 1 2 3 31 31 H 1.08997 * 109.58881 * 353.41746 * 10 9 7 32 32 H 1.08995 * 109.58530 * 113.84827 * 10 9 7 33 33 H 1.08999 * 109.56541 * 185.55449 * 11 10 9 34 34 H 1.09003 * 109.38272 * 65.51777 * 11 10 9 35 35 H 1.09000 * 109.45804 * 301.21593 * 12 11 10 36 36 H 0.96994 * 126.69375 * 180.20060 * 16 14 13 37 37 H 1.08999 * 109.46798 * 49.16721 * 19 17 16 38 38 H 1.08997 * 109.47332 * 169.17448 * 19 17 16 39 39 H 1.08000 * 120.00083 * 0.02562 * 21 20 19 40 40 H 1.07997 * 120.00272 * 180.27447 * 22 21 20 41 41 H 1.08004 * 120.00036 * 179.72432 * 23 22 21 42 42 H 1.07998 * 120.00200 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.00205 * 359.97438 * 25 20 19 44 44 H 1.09005 * 109.49682 * 178.68571 * 28 12 11 45 45 H 1.08993 * 109.52429 * 58.60461 * 28 12 11 46 46 H 1.09002 * 109.58713 * 246.15232 * 29 9 7 47 47 H 1.09003 * 109.58661 * 6.43566 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1039 1.6962 1.2125 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0172 -1.2442 -0.3886 9 7 1.4180 -2.3349 0.4908 10 6 0.3871 -2.2483 1.5341 11 6 0.7853 -3.1480 2.7028 12 6 1.0413 -4.5662 2.1878 13 7 1.3941 -5.4373 3.3116 14 6 2.4541 -5.2477 4.1057 15 8 3.2384 -4.3282 3.9774 16 7 2.5526 -6.1864 5.0643 17 6 1.4213 -7.1093 4.8680 18 1 1.7780 -8.1163 4.6515 19 6 0.5115 -7.1151 6.0982 20 6 1.2144 -7.8041 7.2394 21 6 1.0690 -9.1670 7.4187 22 6 1.7179 -9.8000 8.4624 23 6 2.5030 -9.0681 9.3335 24 6 2.6442 -7.7044 9.1573 25 6 1.9999 -7.0723 8.1102 26 6 0.6942 -6.5318 3.6698 27 8 -0.3083 -6.9648 3.1431 28 6 2.1920 -4.5444 1.1790 29 6 1.8057 -3.6603 -0.0110 30 1 -0.4850 -0.8359 -0.0844 31 1 0.3030 -1.2181 1.8801 32 1 -0.5696 -2.5799 1.1309 33 1 -0.0186 -3.1677 3.4386 34 1 1.6926 -2.7596 3.1656 35 1 0.1411 -4.9448 1.7038 36 1 3.2367 -6.2456 5.7493 37 1 0.2778 -6.0890 6.3819 38 1 -0.4109 -7.6469 5.8654 39 1 0.4520 -9.7381 6.7407 40 1 1.6079 -10.8655 8.5998 41 1 3.0064 -9.5618 10.1515 42 1 3.2572 -7.1325 9.8381 43 1 2.1102 -6.0068 7.9725 44 1 2.3892 -5.5581 0.8301 45 1 3.0865 -4.1430 1.6552 46 1 0.9669 -4.1094 -0.5429 47 1 2.6556 -3.5611 -0.6863 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617679306.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:09 Heat of formation + Delta-G solvation = -19.146731 kcal Electronic energy + Delta-G solvation = -30249.035399 eV Core-core repulsion = 26203.981312 eV Total energy + Delta-G solvation = -4045.054088 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.64179 -40.24852 -39.73313 -39.42095 -37.40158 -36.48289 -34.53946 -33.39593 -32.08436 -31.74352 -31.21492 -29.82356 -27.23868 -25.85317 -24.73437 -24.11585 -23.53647 -23.37017 -21.96934 -21.68038 -20.73614 -19.46981 -19.15576 -18.15121 -17.56260 -17.31238 -16.89580 -16.66887 -16.20357 -16.18603 -15.87397 -15.77219 -15.43079 -15.32820 -15.28322 -15.16945 -14.91976 -14.41007 -14.24550 -14.18794 -13.88521 -13.56806 -13.29042 -13.19791 -12.87768 -12.85200 -12.55292 -12.19952 -12.12100 -12.08226 -11.96089 -11.88829 -11.82147 -11.61075 -11.41886 -11.09932 -10.81418 -10.55807 -10.46552 -9.78987 -9.61878 -8.98459 -8.27665 -5.42406 0.33253 0.52882 0.58863 1.09735 1.57164 1.65174 1.84022 1.90207 2.09526 2.63766 2.83345 2.88921 3.18412 3.46606 3.48810 3.74242 3.76330 3.78967 3.91716 4.00371 4.08487 4.15723 4.20794 4.24318 4.34565 4.37500 4.42876 4.46323 4.58163 4.66025 4.75238 4.78223 4.83527 4.84851 4.92768 4.95528 5.09599 5.14857 5.14903 5.20835 5.36094 5.60758 5.67883 5.69403 5.78252 5.81888 6.04777 6.13978 6.28341 6.37933 7.02352 7.07512 7.73939 8.17703 8.98712 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.022659 B = 0.002464 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.418507 B =11362.915961 C =11885.156332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.074 4.074 3 Si 1.113 2.887 4 H -0.289 1.289 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.356 4.356 8 H 0.049 0.951 9 N -0.617 5.617 10 C 0.162 3.838 11 C -0.131 4.131 12 C 0.165 3.835 13 N -0.574 5.574 14 C 0.697 3.303 15 O -0.571 6.571 16 N -0.704 5.704 17 C 0.115 3.885 18 H 0.159 0.841 19 C -0.073 4.073 20 C -0.091 4.091 21 C -0.117 4.117 22 C -0.125 4.125 23 C -0.128 4.128 24 C -0.128 4.128 25 C -0.125 4.125 26 C 0.523 3.477 27 O -0.491 6.491 28 C -0.130 4.130 29 C 0.149 3.851 30 H 0.255 0.745 31 H 0.050 0.950 32 H 0.016 0.984 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.101 0.899 36 H 0.448 0.552 37 H 0.080 0.920 38 H 0.111 0.889 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.123 0.877 44 H 0.081 0.919 45 H 0.060 0.940 46 H 0.028 0.972 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.487 -23.449 19.649 30.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.270 4.270 3 Si 0.937 3.063 4 H -0.215 1.215 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.485 4.485 8 H 0.067 0.933 9 N -0.341 5.341 10 C 0.036 3.964 11 C -0.170 4.170 12 C 0.064 3.936 13 N -0.319 5.319 14 C 0.398 3.602 15 O -0.446 6.446 16 N -0.369 5.369 17 C 0.006 3.994 18 H 0.176 0.824 19 C -0.111 4.111 20 C -0.091 4.091 21 C -0.135 4.135 22 C -0.143 4.143 23 C -0.146 4.146 24 C -0.146 4.146 25 C -0.143 4.143 26 C 0.311 3.689 27 O -0.362 6.362 28 C -0.169 4.169 29 C 0.023 3.977 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.034 0.966 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.119 0.881 36 H 0.295 0.705 37 H 0.099 0.901 38 H 0.129 0.871 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.154 0.846 42 H 0.151 0.849 43 H 0.141 0.859 44 H 0.099 0.901 45 H 0.079 0.921 46 H 0.046 0.954 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.167 -21.501 19.257 29.037 hybrid contribution 0.368 -1.318 -0.043 1.369 sum 3.535 -22.819 19.214 30.039 Atomic orbital electron populations 1.70900 1.07388 1.29488 1.50389 1.27175 0.96676 1.04679 0.98474 0.82885 0.73913 0.72256 0.77214 1.21455 1.21104 1.19938 1.20187 0.97039 0.89684 1.41603 0.93344 1.44336 1.46088 1.02223 1.41469 1.20652 0.90184 0.97858 0.87714 1.22171 1.01565 0.94503 0.98802 1.21062 0.98960 0.89079 0.84520 1.46722 1.26800 1.27650 1.30714 1.16059 0.80941 0.82861 0.80361 1.91032 1.45416 1.34103 1.74046 1.45502 1.30931 1.27324 1.33191 1.22178 0.87085 0.96910 0.93180 0.82440 1.20743 0.97650 1.02680 0.90031 1.19631 0.98751 0.94251 0.96508 1.21339 0.99803 0.93765 0.98606 1.21457 0.96899 1.01005 0.94929 1.21487 0.98857 0.94358 0.99851 1.21404 0.99752 0.95347 0.98051 1.21252 0.97452 1.00206 0.95421 1.21376 0.83156 0.79370 0.84997 1.90796 1.23119 1.63533 1.58794 1.22221 0.97840 1.00380 0.96505 1.20963 0.97961 0.84939 0.93788 0.93464 0.93148 0.96639 0.91184 0.92342 0.88073 0.70511 0.90119 0.87112 0.84208 0.84264 0.84590 0.84898 0.85877 0.90054 0.92122 0.95430 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.25 12.42 21.65 0.27 -57.99 16 2 C -0.07 -4.31 4.70 84.86 0.40 -3.91 16 3 Si 1.11 52.67 29.98 68.60 2.06 54.72 16 4 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.36 -20.68 9.49 84.03 0.80 -19.89 16 8 H 0.05 2.83 7.94 -2.91 -0.02 2.81 16 9 N -0.62 -32.28 2.85 -699.92 -2.00 -34.28 16 10 C 0.16 7.98 4.66 86.22 0.40 8.38 16 11 C -0.13 -5.29 5.33 30.53 0.16 -5.13 16 12 C 0.17 5.79 2.60 45.02 0.12 5.91 16 13 N -0.57 -16.48 2.51 -750.39 -1.88 -18.36 16 14 C 0.70 19.77 8.04 179.44 1.44 21.21 16 15 O -0.57 -21.49 14.91 -3.84 -0.06 -21.55 16 16 N -0.70 -12.41 6.04 -459.59 -2.78 -15.18 16 17 C 0.11 1.67 3.63 44.37 0.16 1.83 16 18 H 0.16 1.45 8.14 -2.39 -0.02 1.43 16 19 C -0.07 -0.87 5.09 29.85 0.15 -0.72 16 20 C -0.09 -1.02 5.04 -19.87 -0.10 -1.12 16 21 C -0.12 -1.13 9.70 22.27 0.22 -0.92 16 22 C -0.13 -1.15 10.05 22.27 0.22 -0.92 16 23 C -0.13 -1.24 10.05 22.27 0.22 -1.01 16 24 C -0.13 -1.38 10.05 22.27 0.22 -1.16 16 25 C -0.13 -1.48 9.13 22.27 0.20 -1.28 16 26 C 0.52 12.34 7.66 87.94 0.67 13.02 16 27 O -0.49 -13.90 17.51 -2.90 -0.05 -13.95 16 28 C -0.13 -4.78 5.33 30.67 0.16 -4.61 16 29 C 0.15 6.46 6.52 86.36 0.56 7.03 16 30 H 0.26 16.04 6.69 -92.70 -0.62 15.42 16 31 H 0.05 2.81 6.32 -2.39 -0.02 2.79 16 32 H 0.02 0.77 7.86 -2.39 -0.02 0.75 16 33 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.06 2.65 6.77 -2.39 -0.02 2.64 16 35 H 0.10 3.52 7.63 -2.39 -0.02 3.50 16 36 H 0.45 6.12 8.49 -92.71 -0.79 5.33 16 37 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 38 H 0.11 1.17 8.08 -2.39 -0.02 1.15 16 39 H 0.14 0.88 8.06 -2.91 -0.02 0.86 16 40 H 0.14 0.74 8.06 -2.91 -0.02 0.72 16 41 H 0.14 0.82 8.06 -2.91 -0.02 0.80 16 42 H 0.13 1.07 8.06 -2.91 -0.02 1.05 16 43 H 0.12 1.40 8.06 -2.91 -0.02 1.38 16 44 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 45 H 0.06 2.53 6.73 -2.39 -0.02 2.52 16 46 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.06 2.53 7.93 -2.39 -0.02 2.51 16 Total: -1.00 -75.46 379.97 1.94 -73.52 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.35 Total: 16.35 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: 6.02 Total: 16.71 kcal Atomic # 7 Polarization: -119.42 SS G_CDS: -6.39 Total: -125.81 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: -0.11 Total: -35.50 kcal Atomic # 14 Polarization: 52.67 SS G_CDS: 2.06 Total: 54.72 kcal Total: -75.46 1.94 -73.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617679306.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.371 kcal (2) G-P(sol) polarization free energy of solvation -75.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds