Wall clock time and date at job start Wed Apr 1 2020 02:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86803 * 119.99633 * 2 1 4 4 H 1.48504 * 109.46934 * 269.99649 * 3 2 1 5 5 H 1.48498 * 109.47431 * 30.00145 * 3 2 1 6 6 H 1.48498 * 109.46895 * 150.00394 * 3 2 1 7 7 C 1.38650 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99571 * 180.02562 * 7 2 1 9 9 O 1.34833 * 120.00175 * 359.97438 * 7 2 1 10 10 C 1.35749 * 116.99897 * 185.05932 * 9 7 2 11 11 C 1.38876 * 120.07317 * 354.47023 * 10 9 7 12 12 C 1.38098 * 119.93504 * 180.02562 * 11 10 9 13 13 C 1.38302 * 120.06521 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.92653 * 180.02562 * 13 12 11 15 15 N 1.46501 * 109.46951 * 89.99985 * 14 13 12 16 16 C 1.35319 * 125.87060 * 125.32693 * 15 14 13 17 17 C 1.35342 * 106.17664 * 180.11292 * 16 15 14 18 18 C 1.50701 * 126.75328 * 179.85340 * 17 16 15 19 19 H 1.09001 * 109.47334 * 204.71595 * 18 17 16 20 20 C 1.53003 * 109.46728 * 324.71039 * 18 17 16 21 21 C 1.53001 * 109.47086 * 180.02562 * 20 18 17 22 22 C 1.53005 * 109.46907 * 299.99805 * 21 20 18 23 23 C 1.53003 * 109.47088 * 60.00196 * 22 21 20 24 24 C 1.52997 * 109.47429 * 84.71076 * 18 17 16 25 25 H 1.09002 * 109.47017 * 59.99930 * 24 18 17 26 26 O 1.42896 * 109.47035 * 300.00263 * 24 18 17 27 27 N 1.33768 * 106.49935 * 359.59019 * 17 16 15 28 28 N 1.28633 * 108.88375 * 0.26235 * 27 17 16 29 29 C 1.38303 * 120.13992 * 0.29021 * 13 12 11 30 30 C 1.38103 * 120.06809 * 359.45931 * 29 13 12 31 31 H 0.97004 * 119.99975 * 359.97438 * 1 2 3 32 32 H 1.08010 * 120.02893 * 0.04234 * 11 10 9 33 33 H 1.07992 * 119.96484 * 179.97438 * 12 11 10 34 34 H 1.08999 * 109.47457 * 329.99553 * 14 13 12 35 35 H 1.09001 * 109.46670 * 209.99173 * 14 13 12 36 36 H 1.08004 * 126.90677 * 359.96655 * 16 15 14 37 37 H 1.09001 * 109.47451 * 299.99978 * 20 18 17 38 38 H 1.08996 * 109.47408 * 59.99933 * 20 18 17 39 39 H 1.08996 * 109.47283 * 59.99573 * 21 20 18 40 40 H 1.09002 * 109.47437 * 180.02562 * 21 20 18 41 41 H 1.09001 * 109.47505 * 300.00426 * 22 21 20 42 42 H 1.09001 * 109.47114 * 179.97438 * 22 21 20 43 43 H 1.09001 * 109.47451 * 179.97438 * 23 22 21 44 44 H 1.09004 * 109.47255 * 59.99770 * 23 22 21 45 45 H 0.96698 * 114.00715 * 180.02562 * 26 24 18 46 46 H 1.07999 * 119.96194 * 179.70845 * 29 13 12 47 47 H 1.07999 * 120.03661 * 180.27061 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4403 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0701 -3.5046 0.1056 11 6 3.4573 -3.4395 0.0923 12 6 4.2025 -4.5971 0.1999 13 6 3.5688 -5.8204 0.3214 14 6 4.3851 -7.0816 0.4392 15 7 4.6566 -7.3574 1.8522 16 6 4.3743 -8.5093 2.5037 17 6 4.7866 -8.3311 3.7804 18 6 4.6896 -9.3277 4.9067 19 1 4.6788 -8.7989 5.8598 20 6 3.4013 -10.1398 4.7595 21 6 3.3023 -11.1511 5.9033 22 6 4.5071 -12.0931 5.8567 23 6 5.7955 -11.2810 6.0040 24 6 5.8944 -10.2696 4.8597 25 1 6.8122 -9.6910 4.9645 26 8 5.9085 -10.9628 3.6102 27 7 5.3026 -7.0986 3.8445 28 7 5.2105 -6.5479 2.6857 29 6 2.1875 -5.8891 0.3295 30 6 1.4367 -4.7345 0.2274 31 1 -0.4850 0.8401 0.0004 32 1 3.9527 -2.4843 -0.0019 33 1 5.2812 -4.5471 0.1892 34 1 5.3274 -6.9557 -0.0940 35 1 3.8311 -7.9146 0.0064 36 1 3.9108 -9.3922 2.0889 37 1 2.5429 -9.4688 4.7931 38 1 3.4120 -10.6685 3.8064 39 1 3.2915 -10.6220 6.8562 40 1 2.3847 -11.7300 5.7982 41 1 4.5181 -12.6222 4.9038 42 1 4.4369 -12.8133 6.6719 43 1 6.6538 -11.9521 5.9713 44 1 5.7846 -10.7519 6.9569 45 1 6.6468 -11.5792 3.5106 46 1 1.6956 -6.8463 0.4197 47 1 0.3581 -4.7883 0.2382 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881285739.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:36 Heat of formation + Delta-G solvation = 6.613979 kcal Electronic energy + Delta-G solvation = -29073.975388 eV Core-core repulsion = 25030.038369 eV Total energy + Delta-G solvation = -4043.937019 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.12457 -40.87315 -40.08665 -38.61547 -35.97865 -35.60944 -34.32352 -33.42330 -31.92802 -31.57392 -30.78484 -29.76269 -27.95506 -26.88100 -24.47784 -23.71961 -23.63989 -23.06521 -22.30936 -21.43533 -20.42569 -19.91092 -18.93650 -18.18493 -17.65302 -17.51348 -16.60742 -16.47065 -16.31697 -15.99936 -15.68768 -15.59856 -15.52083 -15.31235 -15.10085 -14.57423 -14.36847 -14.23742 -13.90019 -13.72966 -13.54400 -13.40669 -13.22779 -13.05624 -12.70198 -12.60977 -12.53389 -12.44401 -12.39819 -12.16581 -12.08470 -11.74534 -11.59368 -11.33684 -11.26458 -11.12370 -10.85806 -10.82073 -10.55841 -9.92793 -9.86571 -9.10178 -8.53041 -6.21565 0.39487 0.52993 0.83971 1.32182 1.40139 1.49679 1.65857 1.75030 2.13637 2.78546 3.10492 3.28110 3.42457 3.49045 3.66461 3.80404 3.85871 3.91483 4.06618 4.09531 4.14684 4.22795 4.28919 4.35694 4.38223 4.49985 4.51865 4.60389 4.63135 4.67313 4.69074 4.87701 4.94497 4.96989 4.99860 5.08389 5.18010 5.18610 5.27477 5.30521 5.34991 5.42504 5.45054 5.46176 5.62789 5.63646 5.64754 5.80145 5.96438 6.09826 6.91427 6.99915 7.67677 7.68999 8.69579 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.022062 B = 0.002006 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.842552 B =13951.349489 C =14001.705002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.021 4.021 3 Si 1.018 2.982 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.416 4.416 8 H 0.101 0.899 9 O -0.227 6.227 10 C 0.125 3.875 11 C -0.249 4.249 12 C -0.034 4.034 13 C -0.195 4.195 14 C 0.170 3.830 15 N -0.279 5.279 16 C -0.020 4.020 17 C -0.028 4.028 18 C 0.009 3.991 19 H 0.085 0.915 20 C -0.103 4.103 21 C -0.118 4.118 22 C -0.111 4.111 23 C -0.146 4.146 24 C 0.124 3.876 25 H 0.040 0.960 26 O -0.567 6.567 27 N -0.318 5.318 28 N -0.120 5.120 29 C -0.041 4.041 30 C -0.210 4.210 31 H 0.274 0.726 32 H 0.118 0.882 33 H 0.134 0.866 34 H 0.119 0.881 35 H 0.152 0.848 36 H 0.219 0.781 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.389 0.611 46 H 0.157 0.843 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.810 -28.159 7.138 31.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.180 1.180 7 C -0.492 4.492 8 H 0.118 0.882 9 O -0.132 6.132 10 C 0.074 3.926 11 C -0.269 4.269 12 C -0.053 4.053 13 C -0.197 4.197 14 C 0.052 3.948 15 N -0.073 5.073 16 C -0.172 4.172 17 C -0.167 4.167 18 C -0.012 4.012 19 H 0.103 0.897 20 C -0.141 4.141 21 C -0.156 4.156 22 C -0.149 4.149 23 C -0.184 4.184 24 C 0.064 3.936 25 H 0.058 0.942 26 O -0.374 6.374 27 N -0.183 5.183 28 N -0.099 5.099 29 C -0.059 4.059 30 C -0.229 4.229 31 H 0.083 0.917 32 H 0.136 0.864 33 H 0.152 0.848 34 H 0.137 0.863 35 H 0.170 0.830 36 H 0.235 0.765 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.090 0.910 45 H 0.239 0.761 46 H 0.174 0.826 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 11.491 -26.182 7.162 29.476 hybrid contribution 0.068 0.273 -0.140 0.314 sum 11.559 -25.909 7.022 29.226 Atomic orbital electron populations 1.70177 1.07952 1.28960 1.48323 1.26604 0.96898 1.02747 0.95654 0.84594 0.77724 0.74526 0.79432 1.18415 1.19420 1.18006 1.21820 0.92514 0.81382 1.53467 0.88185 1.83940 1.36021 1.12658 1.80625 1.20019 0.91550 0.88113 0.92900 1.21235 0.93184 1.00031 1.12417 1.20917 0.99653 0.91082 0.93658 1.19465 0.93634 0.94334 1.12247 1.21133 1.02036 0.97343 0.74304 1.47850 1.37510 1.09934 1.11975 1.23784 1.07033 0.93192 0.93179 1.22184 1.04163 0.93932 0.96423 1.19522 0.96528 0.91277 0.93841 0.89696 1.21476 0.94705 0.97318 1.00565 1.21542 0.99032 0.97120 0.97905 1.21430 0.93342 0.97529 1.02565 1.22228 0.99430 0.98364 0.98397 1.21540 0.95766 0.91864 0.84432 0.94234 1.86453 1.53999 1.60569 1.36382 1.74990 1.20325 1.08645 1.14379 1.78268 1.17178 1.19218 0.95202 1.20942 0.92883 0.97385 0.94720 1.20466 1.00182 0.90446 1.11822 0.91675 0.86447 0.84784 0.86286 0.83030 0.76465 0.92797 0.90274 0.92161 0.90908 0.91130 0.91210 0.90037 0.91045 0.76149 0.82563 0.86476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.58 13.67 21.61 0.30 -56.28 16 2 C -0.02 -1.21 5.49 84.83 0.47 -0.74 16 3 Si 1.02 43.59 29.55 68.60 2.03 45.62 16 4 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 7 C -0.42 -24.60 9.49 67.92 0.64 -23.96 16 8 H 0.10 5.49 5.20 -2.91 -0.02 5.47 16 9 O -0.23 -13.77 9.76 -22.75 -0.22 -13.99 16 10 C 0.13 6.30 6.65 22.58 0.15 6.45 16 11 C -0.25 -11.13 9.17 22.39 0.21 -10.92 16 12 C -0.03 -1.21 9.69 22.25 0.22 -1.00 16 13 C -0.20 -5.75 5.25 -19.83 -0.10 -5.85 16 14 C 0.17 3.35 6.58 85.63 0.56 3.91 16 15 N -0.28 -7.11 3.43 -351.47 -1.21 -8.32 16 16 C -0.02 -0.44 10.42 83.49 0.87 0.43 16 17 C -0.03 -0.71 5.90 41.60 0.25 -0.46 16 18 C 0.01 0.16 2.48 -11.54 -0.03 0.14 16 19 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 20 C -0.10 -1.52 4.66 30.60 0.14 -1.38 16 21 C -0.12 -1.34 5.92 30.60 0.18 -1.16 16 22 C -0.11 -1.01 5.78 30.60 0.18 -0.83 16 23 C -0.15 -1.41 5.64 30.61 0.17 -1.24 16 24 C 0.12 1.77 3.20 30.61 0.10 1.87 16 25 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 26 O -0.57 -7.04 11.32 -148.98 -1.69 -8.73 16 27 N -0.32 -10.76 12.41 -48.61 -0.60 -11.37 16 28 N -0.12 -4.10 12.92 37.02 0.48 -3.62 16 29 C -0.04 -1.28 9.69 22.25 0.22 -1.07 16 30 C -0.21 -8.79 9.99 22.39 0.22 -8.56 16 31 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 32 H 0.12 5.40 5.64 -2.91 -0.02 5.39 16 33 H 0.13 4.07 8.06 -2.91 -0.02 4.04 16 34 H 0.12 1.94 8.08 -2.39 -0.02 1.92 16 35 H 0.15 1.64 8.01 -2.39 -0.02 1.62 16 36 H 0.22 2.94 7.49 -2.91 -0.02 2.91 16 37 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 1.09 6.92 -2.39 -0.02 1.07 16 39 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 40 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.07 0.65 7.68 -2.39 -0.02 0.63 16 42 H 0.07 0.51 8.14 -2.39 -0.02 0.50 16 43 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 45 H 0.39 1.97 9.08 -74.06 -0.67 1.30 16 46 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 47 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -80.96 386.12 3.85 -77.12 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.33 Total: 23.93 kcal Atomic # 6 Polarization: -48.80 SS G_CDS: 4.44 Total: -44.36 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -1.03 Total: -79.58 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -1.91 Total: -22.73 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -80.96 3.85 -77.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881285739.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.731 kcal (2) G-P(sol) polarization free energy of solvation -80.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds