Wall clock time and date at job start Wed Apr 1 2020 03:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86807 * 119.99877 * 2 1 4 4 H 1.48496 * 109.46854 * 270.00123 * 3 2 1 5 5 H 1.48503 * 109.46714 * 29.99943 * 3 2 1 6 6 H 1.48495 * 109.47373 * 150.00044 * 3 2 1 7 7 C 1.39929 * 120.00527 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00740 * 194.34794 * 7 2 1 9 9 C 1.41409 * 119.99642 * 14.34659 * 7 2 1 10 10 C 1.40767 * 120.21403 * 27.35730 * 9 7 2 11 11 C 1.37638 * 119.87740 * 179.97438 * 10 9 7 12 12 C 1.38544 * 120.31654 * 0.27606 * 11 10 9 13 13 C 1.39205 * 120.43231 * 359.44910 * 12 11 10 14 14 N 1.40214 * 119.94303 * 180.25700 * 13 12 11 15 15 C 1.33797 * 124.17643 * 6.23200 * 14 13 12 16 16 O 1.21537 * 123.77021 * 359.96349 * 15 14 13 17 17 N 1.34518 * 112.45546 * 179.97438 * 15 14 13 18 18 C 1.47316 * 106.62365 * 0.02562 * 17 15 14 19 19 H 1.08998 * 110.59681 * 241.47284 * 18 17 15 20 20 C 1.53003 * 110.59860 * 118.52552 * 18 17 15 21 21 N 1.46896 * 109.47271 * 57.85434 * 20 18 17 22 22 C 1.46844 * 111.00144 * 200.07931 * 21 20 18 23 23 C 1.53040 * 109.52405 * 174.16068 * 22 21 20 24 24 C 1.53114 * 109.27810 * 59.18126 * 23 22 21 25 25 C 1.53121 * 109.15783 * 302.34333 * 24 23 22 26 26 C 1.46844 * 111.00038 * 75.86658 * 21 20 18 27 27 C 1.34759 * 124.17805 * 185.93099 * 14 13 12 28 28 O 1.21244 * 127.16000 * 0.02562 * 27 14 13 29 29 C 1.38230 * 120.11129 * 0.54602 * 13 12 11 30 30 H 0.96997 * 120.00568 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.06048 * 359.95470 * 10 9 7 32 32 H 1.07997 * 119.84060 * 179.97438 * 11 10 9 33 33 H 1.08001 * 119.78334 * 179.70038 * 12 11 10 34 34 H 0.97008 * 126.68813 * 180.02562 * 17 15 14 35 35 H 1.09001 * 109.46927 * 177.85572 * 20 18 17 36 36 H 1.08996 * 109.46931 * 297.85376 * 20 18 17 37 37 H 1.09000 * 109.46411 * 294.17910 * 22 21 20 38 38 H 1.08997 * 109.46232 * 54.14783 * 22 21 20 39 39 H 1.09003 * 109.50026 * 299.23495 * 23 22 21 40 40 H 1.08997 * 109.53294 * 179.14262 * 23 22 21 41 41 H 1.09000 * 109.52526 * 182.44344 * 24 23 22 42 42 H 1.08991 * 109.52470 * 62.24957 * 24 23 22 43 43 H 1.08995 * 109.50519 * 297.71277 * 25 24 23 44 44 H 1.09003 * 109.50057 * 177.59582 * 25 24 23 45 45 H 1.08996 * 109.46670 * 305.85855 * 26 21 20 46 46 H 1.09002 * 109.46209 * 65.83456 * 26 21 20 47 47 H 1.08001 * 120.15549 * 179.70774 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4396 2.6527 0.7001 6 1 3.5398 1.4403 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0627 -1.2265 0.2312 9 6 1.3341 -2.4172 -0.3045 10 6 0.1953 -2.4029 -1.1320 11 6 -0.4550 -3.5803 -1.4238 12 6 0.0024 -4.7797 -0.9024 13 6 1.1305 -4.8096 -0.0874 14 7 1.5876 -6.0299 0.4304 15 6 1.0796 -7.2232 0.1018 16 8 0.1643 -7.3749 -0.6832 17 7 1.6952 -8.2364 0.7374 18 6 2.7345 -7.6309 1.5880 19 1 3.7237 -7.9808 1.2926 20 6 2.4707 -7.9403 3.0630 21 7 2.4259 -9.3957 3.2575 22 6 1.7248 -9.7390 4.5013 23 6 1.5697 -11.2584 4.5983 24 6 2.9548 -11.9105 4.5746 25 6 3.6824 -11.4981 3.2920 26 6 3.7764 -9.9718 3.2328 27 6 2.5965 -6.1460 1.3162 28 8 3.2550 -5.2491 1.7979 29 6 1.7973 -3.6378 0.2172 30 1 -0.4851 0.8400 0.0004 31 1 -0.1675 -1.4697 -1.5368 32 1 -1.3288 -3.5686 -2.0583 33 1 -0.5174 -5.6978 -1.1331 34 1 1.4940 -9.1816 0.6523 35 1 3.2697 -7.5168 3.6716 36 1 1.5171 -7.5044 3.3607 37 1 2.2997 -9.3774 5.3539 38 1 0.7397 -9.2725 4.5036 39 1 0.9830 -11.6189 3.7533 40 1 1.0629 -11.5143 5.5288 41 1 2.8474 -12.9949 4.5998 42 1 3.5279 -11.5801 5.4408 43 1 3.1292 -11.8625 2.4265 44 1 4.6855 -11.9248 3.2894 45 1 4.2814 -9.6743 2.3138 46 1 4.3416 -9.6093 4.0914 47 1 2.6699 -3.6596 0.8533 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927244838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:30 Heat of formation + Delta-G solvation = -12.475633 kcal Electronic energy + Delta-G solvation = -30000.931047 eV Core-core repulsion = 25956.166240 eV Total energy + Delta-G solvation = -4044.764807 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.37774 -39.36412 -38.36972 -37.52225 -36.01754 -34.88319 -33.73133 -32.87566 -31.23137 -29.83829 -29.14152 -28.62194 -25.47857 -25.11628 -23.50022 -23.10956 -22.72832 -21.65944 -20.22716 -20.12792 -19.80085 -18.01405 -17.12154 -17.01812 -16.25900 -16.09768 -15.48451 -15.33754 -15.15787 -15.01257 -14.79340 -14.70846 -14.50728 -14.19069 -13.87203 -13.69550 -13.32619 -13.13778 -13.01416 -12.86967 -12.59348 -12.18688 -11.92551 -11.73889 -11.58086 -11.40965 -11.18598 -11.11919 -11.04286 -10.95641 -10.77232 -10.74318 -10.51503 -9.93535 -9.89103 -9.49608 -9.41384 -9.11142 -8.99231 -8.72326 -7.46754 -7.06788 -6.70975 -4.35514 1.78181 2.52279 2.63298 2.82446 3.10094 3.14361 3.21433 3.22873 3.46450 3.65176 3.97107 4.18252 4.38153 4.41798 4.46823 4.62864 4.67341 4.67783 4.87334 5.02971 5.07462 5.18292 5.24531 5.35084 5.38119 5.48413 5.54179 5.56449 5.60061 5.67834 5.75313 5.79656 5.97097 5.99392 6.34011 6.59544 6.64804 6.67710 6.85243 6.96174 7.02859 7.10925 7.24479 7.42087 7.55979 7.70104 7.98580 8.05467 8.06399 8.22617 8.49427 8.64912 8.91079 8.94759 10.24388 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.019728 B = 0.002526 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.938679 B =11081.037064 C =11895.812099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.460 4.460 8 H 0.079 0.921 9 C 0.119 3.881 10 C -0.159 4.159 11 C -0.096 4.096 12 C -0.243 4.243 13 C 0.135 3.865 14 N -0.506 5.506 15 C 0.698 3.302 16 O -0.531 6.531 17 N -0.712 5.712 18 C 0.102 3.898 19 H 0.121 0.879 20 C 0.057 3.943 21 N -0.535 5.535 22 C 0.056 3.944 23 C -0.116 4.116 24 C -0.122 4.122 25 C -0.116 4.116 26 C 0.049 3.951 27 C 0.517 3.483 28 O -0.450 6.450 29 C -0.233 4.233 30 H 0.280 0.720 31 H 0.121 0.879 32 H 0.096 0.904 33 H 0.131 0.869 34 H 0.441 0.559 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.036 0.964 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.037 0.963 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.856 -20.123 8.429 22.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.490 4.490 8 H 0.097 0.903 9 C 0.116 3.884 10 C -0.179 4.179 11 C -0.115 4.115 12 C -0.264 4.264 13 C 0.047 3.953 14 N -0.243 5.243 15 C 0.400 3.600 16 O -0.404 6.404 17 N -0.377 5.377 18 C -0.009 4.009 19 H 0.139 0.861 20 C -0.072 4.072 21 N -0.260 5.260 22 C -0.071 4.071 23 C -0.154 4.154 24 C -0.160 4.160 25 C -0.154 4.154 26 C -0.079 4.079 27 C 0.303 3.697 28 O -0.319 6.319 29 C -0.254 4.254 30 H 0.091 0.909 31 H 0.139 0.861 32 H 0.114 0.886 33 H 0.148 0.852 34 H 0.286 0.714 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.054 0.946 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.095 0.905 46 H 0.056 0.944 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.247 -19.673 7.894 21.837 hybrid contribution 0.708 0.719 0.734 1.248 sum 5.955 -18.953 8.628 21.659 Atomic orbital electron populations 1.69806 1.07473 1.29118 1.36061 1.25884 0.94784 1.01226 0.92329 0.86272 0.80431 0.80520 0.79247 1.19316 1.20355 1.18628 1.19524 0.96968 0.90532 1.41946 0.90333 1.17429 0.91229 0.91384 0.88330 1.21475 0.98936 0.96859 1.00621 1.20604 0.98735 0.92585 0.99607 1.20918 0.99507 0.99299 1.06662 1.17570 0.97134 0.80875 0.99729 1.43732 1.32407 1.07786 1.40346 1.15942 0.82222 0.80648 0.81232 1.90881 1.29174 1.83774 1.36608 1.45397 1.37279 1.08911 1.46159 1.21991 0.94932 0.90816 0.93131 0.86117 1.22185 1.03404 0.88735 0.92885 1.61767 1.17905 1.09754 1.36560 1.22108 0.98796 0.96573 0.89637 1.21584 0.97301 0.94289 1.02255 1.21586 0.96298 1.00273 0.97837 1.21579 1.00569 0.94665 0.98597 1.22213 0.89092 0.95319 1.01228 1.20684 0.79742 0.90680 0.78637 1.90760 1.45450 1.45462 1.50266 1.21325 1.05064 0.90927 1.08072 0.90918 0.86138 0.88592 0.85171 0.71430 0.91689 0.89490 0.94614 0.90438 0.90915 0.91512 0.91828 0.92331 0.90948 0.91515 0.90525 0.94449 0.85706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.96 10.94 55.55 0.61 -20.35 16 2 C 0.07 1.91 5.19 -17.35 -0.09 1.82 16 3 Si 0.91 19.06 29.58 -169.99 -5.03 14.03 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.46 -12.50 9.06 -37.74 -0.34 -12.84 16 8 H 0.08 2.08 7.89 -52.49 -0.41 1.66 16 9 C 0.12 3.28 5.55 -106.85 -0.59 2.69 16 10 C -0.16 -4.23 8.67 -38.85 -0.34 -4.57 16 11 C -0.10 -2.36 10.02 -39.69 -0.40 -2.75 16 12 C -0.24 -5.91 9.27 -39.11 -0.36 -6.27 16 13 C 0.14 3.24 6.55 -83.67 -0.55 2.70 16 14 N -0.51 -9.96 2.83 -64.40 -0.18 -10.14 16 15 C 0.70 12.31 8.54 -88.02 -0.75 11.55 16 16 O -0.53 -10.94 14.65 5.33 0.08 -10.86 16 17 N -0.71 -8.66 6.07 -59.19 -0.36 -9.02 16 18 C 0.10 1.15 3.65 -68.20 -0.25 0.90 16 19 H 0.12 1.08 7.09 -51.93 -0.37 0.71 16 20 C 0.06 0.55 4.79 -3.82 -0.02 0.53 16 21 N -0.54 -4.20 4.41 -234.68 -1.04 -5.24 16 22 C 0.06 0.41 5.43 -3.83 -0.02 0.39 16 23 C -0.12 -0.72 6.09 -26.65 -0.16 -0.88 16 24 C -0.12 -0.69 6.00 -26.61 -0.16 -0.85 16 25 C -0.12 -0.67 6.09 -26.65 -0.16 -0.83 16 26 C 0.05 0.33 5.29 -3.84 -0.02 0.31 16 27 C 0.52 8.79 7.53 -10.56 -0.08 8.71 16 28 O -0.45 -8.87 15.05 5.59 0.08 -8.78 16 29 C -0.23 -6.03 9.06 -38.70 -0.35 -6.38 16 30 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 31 H 0.12 3.26 6.24 -52.49 -0.33 2.93 16 32 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 33 H 0.13 3.11 5.16 -52.49 -0.27 2.84 16 34 H 0.44 4.34 8.96 -40.82 -0.37 3.97 16 35 H 0.06 0.60 8.00 -51.93 -0.42 0.19 16 36 H 0.09 0.94 7.79 -51.93 -0.40 0.54 16 37 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.08 0.60 7.93 -51.93 -0.41 0.19 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.08 0.48 6.85 -51.93 -0.36 0.12 16 46 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 47 H 0.13 3.23 5.34 -52.49 -0.28 2.95 16 LS Contribution 374.35 15.07 5.64 5.64 Total: -1.00 -31.01 374.35 -11.39 -42.40 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -6.55 Total: 8.10 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -4.64 Total: -5.78 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -0.97 Total: -44.75 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: 0.16 Total: -19.64 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.01 -11.39 -42.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927244838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.924 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds