Wall clock time and date at job start Wed Apr 1 2020 03:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86807 * 119.99877 * 2 1 4 4 H 1.48496 * 109.46854 * 270.00123 * 3 2 1 5 5 H 1.48503 * 109.46714 * 29.99943 * 3 2 1 6 6 H 1.48495 * 109.47373 * 150.00044 * 3 2 1 7 7 C 1.39929 * 120.00527 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00740 * 194.34794 * 7 2 1 9 9 C 1.41409 * 119.99642 * 14.34659 * 7 2 1 10 10 C 1.40767 * 120.21403 * 27.35730 * 9 7 2 11 11 C 1.37638 * 119.87740 * 179.97438 * 10 9 7 12 12 C 1.38544 * 120.31654 * 0.27606 * 11 10 9 13 13 C 1.39205 * 120.43231 * 359.44910 * 12 11 10 14 14 N 1.40214 * 119.94303 * 180.25700 * 13 12 11 15 15 C 1.33797 * 124.17643 * 6.23200 * 14 13 12 16 16 O 1.21537 * 123.77021 * 359.96349 * 15 14 13 17 17 N 1.34518 * 112.45546 * 179.97438 * 15 14 13 18 18 C 1.47316 * 106.62365 * 0.02562 * 17 15 14 19 19 H 1.08998 * 110.59681 * 241.47284 * 18 17 15 20 20 C 1.53003 * 110.59860 * 118.52552 * 18 17 15 21 21 N 1.46896 * 109.47271 * 57.85434 * 20 18 17 22 22 C 1.46844 * 111.00144 * 200.07931 * 21 20 18 23 23 C 1.53040 * 109.52405 * 174.16068 * 22 21 20 24 24 C 1.53114 * 109.27810 * 59.18126 * 23 22 21 25 25 C 1.53121 * 109.15783 * 302.34333 * 24 23 22 26 26 C 1.46844 * 111.00038 * 75.86658 * 21 20 18 27 27 C 1.34759 * 124.17805 * 185.93099 * 14 13 12 28 28 O 1.21244 * 127.16000 * 0.02562 * 27 14 13 29 29 C 1.38230 * 120.11129 * 0.54602 * 13 12 11 30 30 H 0.96997 * 120.00568 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.06048 * 359.95470 * 10 9 7 32 32 H 1.07997 * 119.84060 * 179.97438 * 11 10 9 33 33 H 1.08001 * 119.78334 * 179.70038 * 12 11 10 34 34 H 0.97008 * 126.68813 * 180.02562 * 17 15 14 35 35 H 1.09001 * 109.46927 * 177.85572 * 20 18 17 36 36 H 1.08996 * 109.46931 * 297.85376 * 20 18 17 37 37 H 1.09000 * 109.46411 * 294.17910 * 22 21 20 38 38 H 1.08997 * 109.46232 * 54.14783 * 22 21 20 39 39 H 1.09003 * 109.50026 * 299.23495 * 23 22 21 40 40 H 1.08997 * 109.53294 * 179.14262 * 23 22 21 41 41 H 1.09000 * 109.52526 * 182.44344 * 24 23 22 42 42 H 1.08991 * 109.52470 * 62.24957 * 24 23 22 43 43 H 1.08995 * 109.50519 * 297.71277 * 25 24 23 44 44 H 1.09003 * 109.50057 * 177.59582 * 25 24 23 45 45 H 1.08996 * 109.46670 * 305.85855 * 26 21 20 46 46 H 1.09002 * 109.46209 * 65.83456 * 26 21 20 47 47 H 1.08001 * 120.15549 * 179.70774 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4396 2.6527 0.7001 6 1 3.5398 1.4403 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0627 -1.2265 0.2312 9 6 1.3341 -2.4172 -0.3045 10 6 0.1953 -2.4029 -1.1320 11 6 -0.4550 -3.5803 -1.4238 12 6 0.0024 -4.7797 -0.9024 13 6 1.1305 -4.8096 -0.0874 14 7 1.5876 -6.0299 0.4304 15 6 1.0796 -7.2232 0.1018 16 8 0.1643 -7.3749 -0.6832 17 7 1.6952 -8.2364 0.7374 18 6 2.7345 -7.6309 1.5880 19 1 3.7237 -7.9808 1.2926 20 6 2.4707 -7.9403 3.0630 21 7 2.4259 -9.3957 3.2575 22 6 1.7248 -9.7390 4.5013 23 6 1.5697 -11.2584 4.5983 24 6 2.9548 -11.9105 4.5746 25 6 3.6824 -11.4981 3.2920 26 6 3.7764 -9.9718 3.2328 27 6 2.5965 -6.1460 1.3162 28 8 3.2550 -5.2491 1.7979 29 6 1.7973 -3.6378 0.2172 30 1 -0.4851 0.8400 0.0004 31 1 -0.1675 -1.4697 -1.5368 32 1 -1.3288 -3.5686 -2.0583 33 1 -0.5174 -5.6978 -1.1331 34 1 1.4940 -9.1816 0.6523 35 1 3.2697 -7.5168 3.6716 36 1 1.5171 -7.5044 3.3607 37 1 2.2997 -9.3774 5.3539 38 1 0.7397 -9.2725 4.5036 39 1 0.9830 -11.6189 3.7533 40 1 1.0629 -11.5143 5.5288 41 1 2.8474 -12.9949 4.5998 42 1 3.5279 -11.5801 5.4408 43 1 3.1292 -11.8625 2.4265 44 1 4.6855 -11.9248 3.2894 45 1 4.2814 -9.6743 2.3138 46 1 4.3416 -9.6093 4.0914 47 1 2.6699 -3.6596 0.8533 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927244838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:29 Heat of formation + Delta-G solvation = -32.058567 kcal Electronic energy + Delta-G solvation = -30001.780227 eV Core-core repulsion = 25956.166240 eV Total energy + Delta-G solvation = -4045.613987 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.77672 -40.07733 -39.82670 -39.28345 -37.37597 -36.40040 -35.15482 -34.09233 -31.82669 -31.73594 -30.49173 -30.02398 -27.35771 -26.14610 -24.48301 -24.24604 -23.88248 -22.87914 -21.91117 -21.51099 -20.55111 -19.61325 -18.65516 -18.26084 -17.56102 -17.22611 -17.11804 -16.77312 -16.53946 -16.32970 -16.06864 -15.48638 -15.33346 -15.25594 -15.10952 -15.06373 -14.70848 -14.38476 -14.13530 -13.92759 -13.82649 -13.54780 -13.28748 -13.10115 -12.90202 -12.85441 -12.70774 -12.60381 -12.21264 -12.06935 -11.72647 -11.66867 -11.55935 -11.33863 -11.25598 -11.19929 -11.02149 -10.72405 -10.52568 -9.48116 -9.38024 -8.98711 -8.64717 -6.41712 0.39069 0.81035 0.90690 1.13110 1.38321 1.49562 1.52328 2.04891 2.10424 2.21389 2.60105 2.73202 3.09293 3.56013 3.65147 3.68344 3.91566 4.06285 4.09603 4.17768 4.28266 4.32751 4.40257 4.46374 4.50623 4.62576 4.65105 4.74620 4.75780 4.88131 4.98349 5.00277 5.04652 5.08997 5.12335 5.14891 5.27082 5.30739 5.34676 5.53277 5.53875 5.68629 5.87842 5.95446 6.02460 6.07488 6.09234 6.13517 6.28172 6.39372 6.61200 6.88572 6.92497 7.12005 8.33082 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.019728 B = 0.002526 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.938679 B =11081.037064 C =11895.812099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.035 3.965 3 Si 0.987 3.013 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.261 1.261 7 C -0.495 4.495 8 H 0.073 0.927 9 C 0.093 3.907 10 C -0.182 4.182 11 C -0.093 4.093 12 C -0.251 4.251 13 C 0.144 3.856 14 N -0.521 5.521 15 C 0.695 3.305 16 O -0.564 6.564 17 N -0.679 5.679 18 C 0.122 3.878 19 H 0.161 0.839 20 C 0.063 3.937 21 N -0.534 5.534 22 C 0.055 3.945 23 C -0.113 4.113 24 C -0.122 4.122 25 C -0.114 4.114 26 C 0.045 3.955 27 C 0.510 3.490 28 O -0.481 6.481 29 C -0.253 4.253 30 H 0.290 0.710 31 H 0.110 0.890 32 H 0.121 0.879 33 H 0.138 0.862 34 H 0.457 0.543 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.037 0.963 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.038 0.962 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.941 -21.730 9.154 24.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.180 4.180 3 Si 0.807 3.193 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.184 1.184 7 C -0.524 4.524 8 H 0.092 0.908 9 C 0.091 3.909 10 C -0.202 4.202 11 C -0.112 4.112 12 C -0.272 4.272 13 C 0.053 3.947 14 N -0.258 5.258 15 C 0.396 3.604 16 O -0.440 6.440 17 N -0.345 5.345 18 C 0.013 3.987 19 H 0.178 0.822 20 C -0.066 4.066 21 N -0.259 5.259 22 C -0.073 4.073 23 C -0.151 4.151 24 C -0.159 4.159 25 C -0.151 4.151 26 C -0.082 4.082 27 C 0.298 3.702 28 O -0.351 6.351 29 C -0.274 4.274 30 H 0.101 0.899 31 H 0.128 0.872 32 H 0.139 0.861 33 H 0.156 0.844 34 H 0.305 0.695 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.096 0.904 45 H 0.104 0.896 46 H 0.056 0.944 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.348 -21.368 8.651 23.910 hybrid contribution 0.362 1.093 0.573 1.286 sum 6.709 -20.275 9.224 23.263 Atomic orbital electron populations 1.69852 1.08900 1.30694 1.35749 1.26774 0.95622 1.04481 0.91123 0.85135 0.78889 0.75595 0.79656 1.18375 1.19000 1.18441 1.19755 0.97036 0.91790 1.43847 0.90842 1.17794 0.91964 0.92319 0.88867 1.21421 0.99737 0.97184 1.01879 1.20885 0.99044 0.92033 0.99233 1.21119 0.99800 0.99451 1.06824 1.17586 0.96307 0.82251 0.98527 1.43884 1.33497 1.07240 1.41150 1.16016 0.82130 0.80860 0.81357 1.90844 1.30748 1.84107 1.38284 1.45211 1.36151 1.08566 1.44568 1.22087 0.96228 0.86167 0.94213 0.82165 1.22077 1.03119 0.90228 0.91186 1.61769 1.18906 1.08160 1.37015 1.22141 0.98357 0.97427 0.89355 1.21562 0.97801 0.93289 1.02441 1.21588 0.95791 1.00667 0.97873 1.21571 1.01205 0.93900 0.98462 1.22329 0.88224 0.95919 1.01746 1.21614 0.78308 0.92972 0.77286 1.90738 1.46181 1.47248 1.50970 1.21335 1.05582 0.91553 1.08941 0.89950 0.87218 0.86077 0.84418 0.69471 0.90818 0.90782 0.94515 0.91178 0.91389 0.90812 0.91128 0.92322 0.91133 0.90418 0.89625 0.94364 0.86290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.19 10.94 21.82 0.24 -43.95 16 2 C 0.03 1.80 5.19 85.25 0.44 2.24 16 3 Si 0.99 39.26 29.58 68.60 2.03 41.29 16 4 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 5 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 6 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 7 C -0.49 -27.94 9.06 23.46 0.21 -27.73 16 8 H 0.07 4.06 7.89 -2.91 -0.02 4.04 16 9 C 0.09 5.36 5.55 -21.31 -0.12 5.24 16 10 C -0.18 -10.06 8.67 22.75 0.20 -9.86 16 11 C -0.09 -4.65 10.02 22.20 0.22 -4.42 16 12 C -0.25 -12.40 9.27 22.58 0.21 -12.19 16 13 C 0.14 7.04 6.55 38.03 0.25 7.29 16 14 N -0.52 -20.49 2.83 -594.92 -1.68 -22.18 16 15 C 0.70 23.84 8.54 179.44 1.53 25.37 16 16 O -0.56 -22.92 14.65 -3.83 -0.06 -22.97 16 17 N -0.68 -14.91 6.07 -459.60 -2.79 -17.70 16 18 C 0.12 2.47 3.65 44.37 0.16 2.63 16 19 H 0.16 2.20 7.09 -2.39 -0.02 2.18 16 20 C 0.06 1.08 4.79 86.31 0.41 1.50 16 21 N -0.53 -6.96 4.41 -896.39 -3.95 -10.91 16 22 C 0.05 0.70 5.43 86.33 0.47 1.16 16 23 C -0.11 -1.15 6.09 30.65 0.19 -0.97 16 24 C -0.12 -1.05 6.00 30.67 0.18 -0.87 16 25 C -0.11 -0.96 6.09 30.65 0.19 -0.77 16 26 C 0.05 0.46 5.29 86.33 0.46 0.91 16 27 C 0.51 17.08 7.53 87.94 0.66 17.74 16 28 O -0.48 -19.13 15.05 -2.92 -0.04 -19.17 16 29 C -0.25 -13.64 9.06 22.84 0.21 -13.43 16 30 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 31 H 0.11 6.18 6.24 -2.91 -0.02 6.16 16 32 H 0.12 5.28 8.06 -2.91 -0.02 5.25 16 33 H 0.14 6.61 5.16 -2.91 -0.02 6.59 16 34 H 0.46 7.55 8.96 -92.70 -0.83 6.72 16 35 H 0.07 1.19 8.00 -2.39 -0.02 1.17 16 36 H 0.07 1.50 7.79 -2.39 -0.02 1.48 16 37 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.07 1.00 7.93 -2.39 -0.02 0.98 16 39 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.09 0.72 6.85 -2.39 -0.02 0.71 16 46 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 47 H 0.12 6.45 5.34 -2.91 -0.02 6.44 16 Total: -1.00 -70.22 374.35 -0.20 -70.43 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: 0.18 Total: 31.31 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: 5.87 Total: -6.15 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -8.19 Total: -94.73 kcal Atomic # 8 Polarization: -42.04 SS G_CDS: -0.10 Total: -42.14 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Total: -70.22 -0.20 -70.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927244838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.369 kcal (2) G-P(sol) polarization free energy of solvation -70.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds