Wall clock time and date at job start Wed Apr 1 2020 02:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00128 * 2 1 4 4 H 1.48500 * 109.46865 * 270.00035 * 3 2 1 5 5 H 1.48506 * 109.47059 * 29.99815 * 3 2 1 6 6 H 1.48496 * 109.47357 * 149.99716 * 3 2 1 7 7 C 1.37881 * 120.00318 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99622 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00153 * 180.02562 * 7 2 1 10 10 C 1.50703 * 109.46870 * 180.02562 * 9 7 2 11 11 C 1.38294 * 119.92048 * 90.00210 * 10 9 7 12 12 C 1.38098 * 120.07029 * 179.97438 * 11 10 9 13 13 C 1.38927 * 119.92505 * 0.02562 * 12 11 10 14 14 N 1.39723 * 120.07640 * 180.02562 * 13 12 11 15 15 C 1.34775 * 119.99891 * 35.09375 * 14 13 12 16 16 O 1.21373 * 120.00226 * 355.38324 * 15 14 13 17 17 C 1.49353 * 120.00008 * 175.38033 * 15 14 13 18 18 O 1.21359 * 119.99947 * 0.02562 * 17 15 14 19 19 N 1.34775 * 120.00433 * 180.02562 * 17 15 14 20 20 C 1.46501 * 120.00405 * 180.02562 * 19 17 15 21 21 C 1.50697 * 109.47098 * 180.02562 * 20 19 17 22 22 C 1.29832 * 118.55827 * 94.73579 * 21 20 19 23 23 C 1.50137 * 123.28711 * 180.10858 * 22 21 20 24 24 N 1.46839 * 110.33288 * 343.42743 * 23 22 21 25 25 C 1.47241 * 110.20794 * 50.72155 * 24 23 22 26 26 C 1.50309 * 118.55354 * 275.00102 * 21 20 19 27 27 C 1.38927 * 119.85093 * 0.28225 * 13 12 11 28 28 C 1.38102 * 119.92032 * 359.41689 * 27 13 12 29 29 H 0.96997 * 120.00125 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.46693 * 60.00403 * 9 7 2 31 31 H 1.08998 * 109.46913 * 300.00081 * 9 7 2 32 32 H 1.07994 * 119.96428 * 0.02562 * 11 10 9 33 33 H 1.08003 * 120.03431 * 180.02562 * 12 11 10 34 34 H 0.97000 * 120.00465 * 215.10450 * 14 13 12 35 35 H 0.97007 * 119.99377 * 359.73112 * 19 17 15 36 36 H 1.09004 * 109.47003 * 299.99875 * 20 19 17 37 37 H 1.08996 * 109.47039 * 60.00123 * 20 19 17 38 38 H 1.08000 * 118.35053 * 0.34487 * 22 21 20 39 39 H 1.09003 * 109.47138 * 223.06399 * 23 22 21 40 40 H 1.09000 * 109.01237 * 103.50259 * 23 22 21 41 41 H 1.00906 * 111.00474 * 174.11375 * 24 23 22 42 42 H 1.09004 * 109.63986 * 171.49945 * 25 24 23 43 43 H 1.09006 * 109.79917 * 50.99252 * 25 24 23 44 44 H 1.08999 * 109.42877 * 283.57739 * 26 21 20 45 45 H 1.08995 * 109.43179 * 43.42721 * 26 21 20 46 46 H 1.08001 * 120.04240 * 179.69891 * 27 13 12 47 47 H 1.07999 * 119.96385 * 180.27879 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0140 -2.6149 0.0010 11 6 4.2444 -3.2649 -1.1977 12 6 4.7052 -4.5668 -1.2014 13 6 4.9368 -5.2234 0.0008 14 7 5.4035 -6.5404 0.0007 15 6 6.2619 -6.9511 -0.9537 16 8 6.5644 -6.2031 -1.8605 17 6 6.8410 -8.3265 -0.8956 18 8 6.5383 -9.0745 0.0108 19 7 7.6999 -8.7370 -1.8497 20 6 8.2675 -10.0864 -1.7930 21 6 9.1902 -10.2930 -2.9664 22 6 10.4594 -10.0732 -2.8041 23 6 11.4718 -10.2429 -3.8998 24 7 10.9081 -11.0406 -4.9962 25 6 9.6034 -10.4936 -5.4045 26 6 8.5998 -10.7385 -4.2749 27 6 4.6981 -4.5695 1.2031 28 6 4.2432 -3.2656 1.1995 29 1 -0.4850 0.8400 -0.0004 30 1 3.8745 -0.6800 0.8912 31 1 3.8753 -0.6804 -0.8888 32 1 4.0646 -2.7537 -2.1318 33 1 4.8854 -5.0738 -2.1379 34 1 5.1096 -7.1592 0.6874 35 1 7.9388 -8.1405 -2.5764 36 1 8.8274 -10.2063 -0.8654 37 1 7.4629 -10.8208 -1.8293 38 1 10.8047 -9.7559 -1.8312 39 1 12.3543 -10.7459 -3.5044 40 1 11.7549 -9.2602 -4.2770 41 1 11.5442 -11.0807 -5.7785 42 1 9.2638 -10.9943 -6.3113 43 1 9.6933 -9.4230 -5.5890 44 1 8.3644 -11.8016 -4.2232 45 1 7.6877 -10.1752 -4.4717 46 1 4.8724 -5.0787 2.1394 47 1 4.0618 -2.7550 2.1338 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927798940.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:22 Heat of formation + Delta-G solvation = -23.833124 kcal Electronic energy + Delta-G solvation = -27936.377876 eV Core-core repulsion = 23891.120572 eV Total energy + Delta-G solvation = -4045.257305 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.12047 -39.73420 -39.02755 -38.06287 -35.94071 -34.99879 -33.00580 -32.74064 -31.37770 -30.92098 -30.44697 -28.08844 -27.14815 -24.83766 -24.01681 -23.00086 -22.48055 -22.32776 -20.75812 -20.12598 -19.12342 -18.07850 -17.49536 -17.08847 -16.78757 -16.55760 -16.29796 -15.88572 -15.42089 -15.04182 -14.95359 -14.78434 -14.45713 -14.22348 -14.12119 -13.77517 -13.66978 -13.30126 -13.10126 -12.99407 -12.72641 -12.63047 -12.49635 -12.42633 -11.92303 -11.71375 -11.63943 -11.49763 -11.07811 -10.90401 -10.54413 -10.25800 -10.15189 -9.88492 -9.67559 -9.65016 -9.47307 -9.35574 -9.04768 -8.59939 -8.42193 -7.55299 -6.08853 -4.08252 1.03914 1.36574 1.89860 1.94632 2.30603 3.00889 3.27861 3.35759 3.38358 3.48299 3.63054 3.99029 4.20166 4.20578 4.36829 4.40211 4.63158 4.69810 4.77113 4.90344 4.98525 5.06527 5.17493 5.22290 5.28184 5.32541 5.37947 5.43601 5.52854 5.73896 5.77319 5.84188 5.85533 5.91742 6.04134 6.26747 6.37065 6.46906 6.51543 6.65958 6.75919 6.79899 6.90229 6.98640 7.00259 7.21359 7.45158 7.53367 7.55328 7.68246 7.82325 8.47630 8.96337 9.51241 11.03985 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.022668 B = 0.001690 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.911041 B =16565.519067 C =17142.801016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.514 4.514 8 H 0.074 0.926 9 C 0.013 3.987 10 C -0.032 4.032 11 C -0.107 4.107 12 C -0.113 4.113 13 C 0.097 3.903 14 N -0.634 5.634 15 C 0.502 3.498 16 O -0.504 6.504 17 C 0.511 3.489 18 O -0.518 6.518 19 N -0.697 5.697 20 C 0.153 3.847 21 C -0.137 4.137 22 C -0.129 4.129 23 C 0.082 3.918 24 N -0.686 5.686 25 C 0.052 3.948 26 C -0.080 4.080 27 C -0.134 4.134 28 C -0.106 4.106 29 H 0.264 0.736 30 H 0.029 0.971 31 H 0.024 0.976 32 H 0.124 0.876 33 H 0.130 0.870 34 H 0.418 0.582 35 H 0.414 0.586 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.116 0.884 39 H 0.089 0.911 40 H 0.047 0.953 41 H 0.346 0.654 42 H 0.080 0.920 43 H 0.038 0.962 44 H 0.084 0.916 45 H 0.077 0.923 46 H 0.119 0.881 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.525 -22.730 -7.267 32.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.552 4.552 8 H 0.092 0.908 9 C -0.024 4.024 10 C -0.033 4.033 11 C -0.126 4.126 12 C -0.133 4.133 13 C 0.005 3.995 14 N -0.279 5.279 15 C 0.284 3.716 16 O -0.378 6.378 17 C 0.292 3.708 18 O -0.394 6.394 19 N -0.351 5.351 20 C 0.031 3.969 21 C -0.138 4.138 22 C -0.148 4.148 23 C -0.047 4.047 24 N -0.317 5.317 25 C -0.078 4.078 26 C -0.118 4.118 27 C -0.154 4.154 28 C -0.124 4.124 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.043 0.957 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.256 0.744 35 H 0.250 0.750 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.133 0.867 39 H 0.107 0.893 40 H 0.065 0.935 41 H 0.164 0.836 42 H 0.099 0.901 43 H 0.056 0.944 44 H 0.102 0.898 45 H 0.096 0.904 46 H 0.137 0.863 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 22.120 -23.150 -6.831 32.739 hybrid contribution 0.520 1.621 -0.383 1.745 sum 22.640 -21.529 -7.214 32.064 Atomic orbital electron populations 1.69897 1.06259 1.26994 1.50610 1.24999 0.94737 0.99023 0.94469 0.86806 0.80394 0.83659 0.78658 1.20160 1.21252 1.18914 1.20931 0.88199 0.94697 1.51358 0.90769 1.18827 0.97479 0.88574 0.97485 1.20373 0.92612 0.98154 0.92150 1.20994 0.99138 0.93955 0.98494 1.21117 0.99730 0.95585 0.96853 1.17542 1.03420 0.83819 0.94751 1.43001 1.43236 1.11757 1.29946 1.20080 0.80387 0.87819 0.83361 1.90781 1.59126 1.54932 1.32994 1.20086 0.80246 0.87696 0.82809 1.90782 1.59328 1.55377 1.33903 1.45815 1.45049 1.16394 1.27808 1.20482 0.96483 0.83147 0.96812 1.20931 0.94554 1.02273 0.95998 1.22274 0.94161 0.98927 0.99479 1.20844 0.96581 0.96124 0.91165 1.60758 1.05337 1.53591 1.12048 1.22044 0.89976 0.97953 0.97796 1.20502 0.97817 1.02277 0.91157 1.20797 1.03541 0.95371 0.95659 1.20881 0.99463 0.93532 0.98551 0.92586 0.95295 0.95733 0.85776 0.85186 0.74442 0.74958 0.90312 0.90103 0.86658 0.89277 0.93499 0.83623 0.90147 0.94410 0.89791 0.90439 0.86287 0.85643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.96 55.43 0.77 -26.58 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.26 -6.10 6.54 56.52 0.37 -5.74 16 7 C -0.51 -14.43 9.65 -34.44 -0.33 -14.76 16 8 H 0.07 2.28 7.98 -52.49 -0.42 1.86 16 9 C 0.01 0.32 4.17 -29.03 -0.12 0.20 16 10 C -0.03 -0.67 5.07 -104.58 -0.53 -1.20 16 11 C -0.11 -2.07 9.69 -39.61 -0.38 -2.45 16 12 C -0.11 -1.98 8.69 -39.38 -0.34 -2.33 16 13 C 0.10 1.55 6.30 -83.75 -0.53 1.02 16 14 N -0.63 -8.37 5.32 -10.30 -0.05 -8.42 16 15 C 0.50 6.57 7.73 -11.63 -0.09 6.48 16 16 O -0.50 -7.55 13.91 5.48 0.08 -7.48 16 17 C 0.51 5.77 7.89 -11.63 -0.09 5.68 16 18 O -0.52 -6.74 16.48 5.49 0.09 -6.65 16 19 N -0.70 -6.03 5.54 -61.94 -0.34 -6.37 16 20 C 0.15 1.10 5.72 -5.19 -0.03 1.07 16 21 C -0.14 -0.85 5.26 -100.93 -0.53 -1.38 16 22 C -0.13 -0.75 9.50 -35.97 -0.34 -1.10 16 23 C 0.08 0.40 6.75 -5.28 -0.04 0.37 16 24 N -0.69 -3.55 6.92 -115.10 -0.80 -4.35 16 25 C 0.05 0.26 6.62 -3.59 -0.02 0.24 16 26 C -0.08 -0.45 6.04 -28.03 -0.17 -0.62 16 27 C -0.13 -2.12 9.97 -39.38 -0.39 -2.51 16 28 C -0.11 -1.94 9.69 -39.61 -0.38 -2.33 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 30 H 0.03 0.67 7.14 -51.93 -0.37 0.30 16 31 H 0.02 0.57 7.51 -51.93 -0.39 0.18 16 32 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 33 H 0.13 2.20 6.23 -52.48 -0.33 1.88 16 34 H 0.42 4.66 8.30 -40.82 -0.34 4.32 16 35 H 0.41 3.32 7.93 -40.82 -0.32 3.00 16 36 H 0.08 0.58 7.85 -51.93 -0.41 0.17 16 37 H 0.08 0.60 8.13 -51.93 -0.42 0.18 16 38 H 0.12 0.60 7.81 -52.49 -0.41 0.19 16 39 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 41 H 0.35 1.20 8.90 -39.29 -0.35 0.85 16 42 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.04 0.20 8.09 -51.93 -0.42 -0.22 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 47 H 0.13 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 393.60 15.07 5.93 5.93 Total: -1.00 -33.04 393.60 -10.14 -43.18 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -6.73 Total: 5.94 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -4.42 Total: -11.73 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: -0.42 Total: -45.72 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.17 Total: -14.13 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.04 -10.14 -43.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927798940.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.349 kcal (2) G-P(sol) polarization free energy of solvation -33.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds