Wall clock time and date at job start Wed Apr 1 2020 02:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00128 * 2 1 4 4 H 1.48500 * 109.46865 * 270.00035 * 3 2 1 5 5 H 1.48506 * 109.47059 * 29.99815 * 3 2 1 6 6 H 1.48496 * 109.47357 * 149.99716 * 3 2 1 7 7 C 1.37881 * 120.00318 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99622 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00153 * 180.02562 * 7 2 1 10 10 C 1.50703 * 109.46870 * 180.02562 * 9 7 2 11 11 C 1.38294 * 119.92048 * 90.00210 * 10 9 7 12 12 C 1.38098 * 120.07029 * 179.97438 * 11 10 9 13 13 C 1.38927 * 119.92505 * 0.02562 * 12 11 10 14 14 N 1.39723 * 120.07640 * 180.02562 * 13 12 11 15 15 C 1.34775 * 119.99891 * 35.09375 * 14 13 12 16 16 O 1.21373 * 120.00226 * 355.38324 * 15 14 13 17 17 C 1.49353 * 120.00008 * 175.38033 * 15 14 13 18 18 O 1.21359 * 119.99947 * 0.02562 * 17 15 14 19 19 N 1.34775 * 120.00433 * 180.02562 * 17 15 14 20 20 C 1.46501 * 120.00405 * 180.02562 * 19 17 15 21 21 C 1.50697 * 109.47098 * 180.02562 * 20 19 17 22 22 C 1.29832 * 118.55827 * 94.73579 * 21 20 19 23 23 C 1.50137 * 123.28711 * 180.10858 * 22 21 20 24 24 N 1.46839 * 110.33288 * 343.42743 * 23 22 21 25 25 C 1.47241 * 110.20794 * 50.72155 * 24 23 22 26 26 C 1.50309 * 118.55354 * 275.00102 * 21 20 19 27 27 C 1.38927 * 119.85093 * 0.28225 * 13 12 11 28 28 C 1.38102 * 119.92032 * 359.41689 * 27 13 12 29 29 H 0.96997 * 120.00125 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.46693 * 60.00403 * 9 7 2 31 31 H 1.08998 * 109.46913 * 300.00081 * 9 7 2 32 32 H 1.07994 * 119.96428 * 0.02562 * 11 10 9 33 33 H 1.08003 * 120.03431 * 180.02562 * 12 11 10 34 34 H 0.97000 * 120.00465 * 215.10450 * 14 13 12 35 35 H 0.97007 * 119.99377 * 359.73112 * 19 17 15 36 36 H 1.09004 * 109.47003 * 299.99875 * 20 19 17 37 37 H 1.08996 * 109.47039 * 60.00123 * 20 19 17 38 38 H 1.08000 * 118.35053 * 0.34487 * 22 21 20 39 39 H 1.09003 * 109.47138 * 223.06399 * 23 22 21 40 40 H 1.09000 * 109.01237 * 103.50259 * 23 22 21 41 41 H 1.00906 * 111.00474 * 174.11375 * 24 23 22 42 42 H 1.09004 * 109.63986 * 171.49945 * 25 24 23 43 43 H 1.09006 * 109.79917 * 50.99252 * 25 24 23 44 44 H 1.08999 * 109.42877 * 283.57739 * 26 21 20 45 45 H 1.08995 * 109.43179 * 43.42721 * 26 21 20 46 46 H 1.08001 * 120.04240 * 179.69891 * 27 13 12 47 47 H 1.07999 * 119.96385 * 180.27879 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0140 -2.6149 0.0010 11 6 4.2444 -3.2649 -1.1977 12 6 4.7052 -4.5668 -1.2014 13 6 4.9368 -5.2234 0.0008 14 7 5.4035 -6.5404 0.0007 15 6 6.2619 -6.9511 -0.9537 16 8 6.5644 -6.2031 -1.8605 17 6 6.8410 -8.3265 -0.8956 18 8 6.5383 -9.0745 0.0108 19 7 7.6999 -8.7370 -1.8497 20 6 8.2675 -10.0864 -1.7930 21 6 9.1902 -10.2930 -2.9664 22 6 10.4594 -10.0732 -2.8041 23 6 11.4718 -10.2429 -3.8998 24 7 10.9081 -11.0406 -4.9962 25 6 9.6034 -10.4936 -5.4045 26 6 8.5998 -10.7385 -4.2749 27 6 4.6981 -4.5695 1.2031 28 6 4.2432 -3.2656 1.1995 29 1 -0.4850 0.8400 -0.0004 30 1 3.8745 -0.6800 0.8912 31 1 3.8753 -0.6804 -0.8888 32 1 4.0646 -2.7537 -2.1318 33 1 4.8854 -5.0738 -2.1379 34 1 5.1096 -7.1592 0.6874 35 1 7.9388 -8.1405 -2.5764 36 1 8.8274 -10.2063 -0.8654 37 1 7.4629 -10.8208 -1.8293 38 1 10.8047 -9.7559 -1.8312 39 1 12.3543 -10.7459 -3.5044 40 1 11.7549 -9.2602 -4.2770 41 1 11.5442 -11.0807 -5.7785 42 1 9.2638 -10.9943 -6.3113 43 1 9.6933 -9.4230 -5.5890 44 1 8.3644 -11.8016 -4.2232 45 1 7.6877 -10.1752 -4.4717 46 1 4.8724 -5.0787 2.1394 47 1 4.0618 -2.7550 2.1338 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927798940.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:20 Heat of formation + Delta-G solvation = -47.769126 kcal Electronic energy + Delta-G solvation = -27937.415819 eV Core-core repulsion = 23891.120572 eV Total energy + Delta-G solvation = -4046.295248 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.16284 -40.66256 -39.74234 -39.22758 -36.85024 -36.09493 -34.93195 -33.34707 -32.64420 -31.83988 -31.77592 -29.31997 -28.24018 -25.93216 -24.61904 -24.15485 -23.88499 -23.14236 -22.00169 -21.38121 -20.09919 -18.95585 -18.62654 -18.49215 -17.80637 -17.39177 -17.26130 -16.77292 -16.61511 -16.15444 -15.96900 -15.66887 -15.58426 -15.18559 -15.12717 -14.85159 -14.55980 -14.39954 -14.32997 -14.18776 -13.93979 -13.62675 -13.51682 -13.28366 -13.16559 -13.11322 -12.91792 -12.49496 -12.25913 -12.05394 -11.85921 -11.79862 -11.60300 -11.50189 -11.17542 -10.81365 -10.77371 -10.41188 -10.01215 -9.81355 -9.42980 -8.97466 -8.28575 -6.33701 -0.03962 0.52509 0.59412 0.80904 1.38264 1.39508 1.42718 1.51513 1.99873 2.36531 2.57643 2.90934 3.05870 3.28292 3.29640 3.51320 3.75880 4.00234 4.09314 4.21177 4.28239 4.30219 4.34444 4.49411 4.50947 4.52490 4.55976 4.60523 4.60841 4.69454 4.89381 4.94797 5.01126 5.02889 5.06824 5.13371 5.21948 5.28198 5.32356 5.41773 5.51114 5.57941 5.81381 5.84067 5.97160 5.97628 6.08845 6.21952 6.28575 6.46831 6.60364 6.72690 6.79171 7.29770 8.87778 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.022668 B = 0.001690 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.911041 B =16565.519067 C =17142.801016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.008 3.992 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.244 1.244 7 C -0.520 4.520 8 H 0.029 0.971 9 C 0.020 3.980 10 C -0.067 4.067 11 C -0.118 4.118 12 C -0.120 4.120 13 C 0.108 3.892 14 N -0.628 5.628 15 C 0.504 3.496 16 O -0.522 6.522 17 C 0.518 3.482 18 O -0.536 6.536 19 N -0.682 5.682 20 C 0.155 3.845 21 C -0.144 4.144 22 C -0.128 4.128 23 C 0.079 3.921 24 N -0.695 5.695 25 C 0.052 3.948 26 C -0.081 4.081 27 C -0.124 4.124 28 C -0.112 4.112 29 H 0.267 0.733 30 H 0.036 0.964 31 H 0.029 0.971 32 H 0.121 0.879 33 H 0.134 0.866 34 H 0.430 0.570 35 H 0.418 0.582 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.121 0.879 39 H 0.099 0.901 40 H 0.052 0.948 41 H 0.355 0.645 42 H 0.089 0.911 43 H 0.034 0.966 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.157 0.843 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.104 -23.531 -7.053 35.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.189 4.189 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.167 1.167 7 C -0.558 4.558 8 H 0.047 0.953 9 C -0.017 4.017 10 C -0.068 4.068 11 C -0.137 4.137 12 C -0.140 4.140 13 C 0.015 3.985 14 N -0.275 5.275 15 C 0.287 3.713 16 O -0.398 6.398 17 C 0.298 3.702 18 O -0.413 6.413 19 N -0.335 5.335 20 C 0.033 3.967 21 C -0.145 4.145 22 C -0.148 4.148 23 C -0.050 4.050 24 N -0.327 5.327 25 C -0.078 4.078 26 C -0.118 4.118 27 C -0.144 4.144 28 C -0.130 4.130 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.139 0.861 33 H 0.152 0.848 34 H 0.270 0.730 35 H 0.256 0.744 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.139 0.861 39 H 0.117 0.883 40 H 0.070 0.930 41 H 0.174 0.826 42 H 0.107 0.893 43 H 0.053 0.947 44 H 0.100 0.900 45 H 0.096 0.904 46 H 0.174 0.826 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 24.737 -23.992 -6.633 35.093 hybrid contribution -0.242 1.675 -0.490 1.762 sum 24.495 -22.317 -7.123 33.894 Atomic orbital electron populations 1.70057 1.08305 1.28233 1.52333 1.25976 0.95587 1.03354 0.94000 0.85661 0.79598 0.78171 0.79270 1.19220 1.20883 1.16718 1.21171 0.90797 0.93036 1.50754 0.95274 1.18670 0.94281 0.91024 0.97747 1.20261 0.95435 0.97343 0.93763 1.21019 0.99745 0.94852 0.98056 1.21172 0.99874 0.95052 0.97853 1.17630 1.01766 0.84798 0.94335 1.42950 1.43196 1.10856 1.30484 1.20431 0.79859 0.88402 0.82651 1.90778 1.59681 1.55672 1.33677 1.19692 0.80637 0.86645 0.83198 1.90785 1.60271 1.55471 1.34783 1.45841 1.43713 1.16996 1.26911 1.20562 0.96614 0.82031 0.97449 1.20892 0.94543 1.03216 0.95867 1.22485 0.94251 0.97951 1.00077 1.20905 0.96587 0.96531 0.90930 1.60765 1.05642 1.53683 1.12602 1.22048 0.89936 0.97880 0.97911 1.20510 0.98043 1.02100 0.91170 1.21082 1.01826 0.94344 0.97126 1.21037 0.99378 0.94668 0.97958 0.92395 0.94616 0.95308 0.86099 0.84780 0.72998 0.74446 0.90108 0.90117 0.86064 0.88309 0.93011 0.82595 0.89266 0.94724 0.90046 0.90392 0.82567 0.84908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.44 13.96 21.45 0.30 -59.14 16 2 C 0.01 0.46 5.47 84.66 0.46 0.92 16 3 Si 0.95 43.71 27.47 68.60 1.88 45.59 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.24 -10.32 6.54 99.48 0.65 -9.67 16 7 C -0.52 -30.04 9.65 25.60 0.25 -29.80 16 8 H 0.03 1.88 7.98 -2.91 -0.02 1.86 16 9 C 0.02 0.95 4.17 29.10 0.12 1.07 16 10 C -0.07 -2.82 5.07 -19.84 -0.10 -2.92 16 11 C -0.12 -4.60 9.69 22.25 0.22 -4.38 16 12 C -0.12 -4.13 8.69 22.40 0.19 -3.93 16 13 C 0.11 3.27 6.30 38.21 0.24 3.51 16 14 N -0.63 -15.28 5.32 -304.85 -1.62 -16.90 16 15 C 0.50 12.33 7.73 87.24 0.67 13.00 16 16 O -0.52 -14.95 13.91 -3.32 -0.05 -15.00 16 17 C 0.52 10.79 7.89 87.24 0.69 11.48 16 18 O -0.54 -12.96 16.48 -3.28 -0.05 -13.01 16 19 N -0.68 -10.66 5.54 -468.24 -2.59 -13.26 16 20 C 0.16 1.99 5.72 85.63 0.49 2.48 16 21 C -0.14 -1.58 5.26 -15.41 -0.08 -1.66 16 22 C -0.13 -1.28 9.50 26.67 0.25 -1.02 16 23 C 0.08 0.64 6.75 85.39 0.58 1.22 16 24 N -0.69 -6.06 6.92 -518.05 -3.58 -9.64 16 25 C 0.05 0.45 6.62 86.27 0.57 1.02 16 26 C -0.08 -0.81 6.04 29.75 0.18 -0.63 16 27 C -0.12 -3.65 9.97 22.40 0.22 -3.43 16 28 C -0.11 -4.00 9.69 22.25 0.22 -3.79 16 29 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 30 H 0.04 1.62 7.14 -2.39 -0.02 1.60 16 31 H 0.03 1.32 7.51 -2.39 -0.02 1.30 16 32 H 0.12 4.62 8.06 -2.91 -0.02 4.59 16 33 H 0.13 4.48 6.23 -2.91 -0.02 4.46 16 34 H 0.43 8.53 8.30 -92.71 -0.77 7.76 16 35 H 0.42 6.03 7.93 -92.70 -0.74 5.30 16 36 H 0.08 1.04 7.85 -2.38 -0.02 1.02 16 37 H 0.08 1.08 8.13 -2.39 -0.02 1.06 16 38 H 0.12 1.03 7.81 -2.91 -0.02 1.01 16 39 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.36 1.89 8.90 -89.69 -0.80 1.10 16 42 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.03 0.32 8.09 -2.38 -0.02 0.30 16 44 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.16 3.41 8.06 -2.91 -0.02 3.38 16 47 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -72.15 393.60 -1.88 -74.03 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: -1.33 Total: 24.19 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: 5.17 Total: -16.87 kcal Atomic # 7 Polarization: -91.44 SS G_CDS: -7.50 Total: -98.94 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.10 Total: -28.01 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.88 Total: 45.59 kcal Total: -72.15 -1.88 -74.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927798940.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.258 kcal (2) G-P(sol) polarization free energy of solvation -72.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds