Wall clock time and date at job start Wed Apr 1 2020 01:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47188 * 179.97438 * 2 1 4 4 C 1.53008 * 109.47046 * 207.79379 * 3 2 1 5 5 N 1.46903 * 109.47230 * 179.54469 * 4 3 2 6 6 C 1.46899 * 110.99905 * 288.00620 * 5 4 3 7 7 C 1.50691 * 109.47195 * 160.35875 * 6 5 4 8 8 H 1.08001 * 120.00132 * 4.65807 * 7 6 5 9 9 C 1.37884 * 120.00280 * 184.65721 * 7 6 5 10 10 N 1.31518 * 119.99450 * 0.02562 * 9 7 6 11 11 Si 1.86792 * 120.00211 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47259 * 90.00114 * 11 9 7 13 13 H 1.48500 * 109.47229 * 209.99942 * 11 9 7 14 14 H 1.48500 * 109.47243 * 330.00164 * 11 9 7 15 15 C 1.46901 * 110.99743 * 164.05459 * 5 4 3 16 16 C 1.52998 * 109.46861 * 293.94948 * 15 5 4 17 17 H 1.09002 * 109.47061 * 60.00425 * 16 15 5 18 18 O 1.42894 * 109.47404 * 300.00143 * 16 15 5 19 19 C 1.53000 * 109.46850 * 180.02562 * 16 15 5 20 20 O 1.42898 * 109.47184 * 185.00212 * 19 16 15 21 21 C 1.35937 * 117.00243 * 179.97438 * 20 19 16 22 22 C 1.39286 * 119.73000 * 359.97195 * 21 20 19 23 23 C 1.36562 * 120.47577 * 179.97438 * 22 21 20 24 24 C 1.39643 * 119.84007 * 0.03268 * 23 22 21 25 25 C 1.46567 * 133.93395 * 179.97438 * 24 23 22 26 26 C 1.34188 * 107.00251 * 180.02562 * 25 24 23 27 27 N 1.36967 * 109.92255 * 359.97438 * 26 25 24 28 28 H 0.96999 * 125.06962 * 179.97438 * 27 26 25 29 29 C 1.37689 * 109.85566 * 0.02562 * 27 26 25 30 30 C 1.38205 * 119.73238 * 179.97438 * 21 20 19 31 31 H 1.09010 * 109.47261 * 87.80023 * 3 2 1 32 32 H 1.08994 * 109.47827 * 327.79353 * 3 2 1 33 33 H 1.08998 * 109.46560 * 59.54229 * 4 3 2 34 34 H 1.09002 * 109.46964 * 299.54752 * 4 3 2 35 35 H 1.09003 * 109.47510 * 280.35933 * 6 5 4 36 36 H 1.09005 * 109.47168 * 40.35428 * 6 5 4 37 37 H 0.96999 * 119.99559 * 180.02562 * 10 9 7 38 38 H 1.09002 * 109.46936 * 173.95297 * 15 5 4 39 39 H 1.08993 * 109.47045 * 53.95632 * 15 5 4 40 40 H 0.96702 * 114.00447 * 300.00442 * 18 16 15 41 41 H 1.08994 * 109.47162 * 64.99804 * 19 16 15 42 42 H 1.09007 * 109.46936 * 304.99979 * 19 16 15 43 43 H 1.07997 * 119.75621 * 0.02562 * 22 21 20 44 44 H 1.08001 * 120.07289 * 180.30109 * 23 22 21 45 45 H 1.07998 * 126.49745 * 0.02562 * 25 24 23 46 46 H 1.08001 * 125.03891 * 179.97438 * 26 25 24 47 47 H 1.08003 * 120.13104 * 359.97438 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1173 1.2770 0.6727 5 7 4.5863 1.2726 0.6824 6 6 5.1034 0.2904 1.6446 7 6 6.5339 -0.0402 1.3053 8 1 7.0351 0.4866 0.5067 9 6 7.2031 -1.0153 2.0143 10 7 6.5925 -1.6572 2.9864 11 14 8.9760 -1.4256 1.5931 12 1 9.8863 -0.5684 2.3944 13 1 9.2407 -2.8536 1.9029 14 1 9.2108 -1.1809 0.1474 15 6 5.1149 2.6140 0.9640 16 6 4.7614 3.5540 -0.1903 17 1 3.6780 3.6057 -0.2980 18 8 5.3375 3.0595 -1.4009 19 6 5.3125 4.9509 0.1026 20 8 4.8838 5.8556 -0.9171 21 6 5.2894 7.1483 -0.8057 22 6 6.0861 7.5319 0.2705 23 6 6.5026 8.8263 0.3971 24 6 6.1275 9.7735 -0.5579 25 6 6.3877 11.2060 -0.7262 26 6 5.7587 11.5900 -1.8477 27 7 5.1167 10.5199 -2.4124 28 1 4.5943 10.5510 -3.2291 29 6 5.3228 9.3939 -1.6473 30 6 4.9078 8.0711 -1.7611 31 1 2.9713 -0.0386 -1.0270 32 1 2.9717 -0.8686 0.5477 33 1 2.7473 1.3204 1.6970 34 1 2.7602 2.1462 0.1203 35 1 5.0557 0.7073 2.6506 36 1 4.5000 -0.6162 1.5981 37 1 7.0634 -2.3428 3.4854 38 1 6.1984 2.5624 1.0717 39 1 4.6756 2.9912 1.8874 40 1 6.3015 2.9870 -1.3769 41 1 6.4017 4.9151 0.1222 42 1 4.9428 5.2919 1.0697 43 1 6.3772 6.8003 1.0096 44 1 7.1242 9.1156 1.2315 45 1 6.9744 11.8336 -0.0718 46 1 5.7586 12.5939 -2.2459 47 1 4.2903 7.7663 -2.5931 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930108010.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:04 Heat of formation + Delta-G solvation = 4.152430 kcal Electronic energy + Delta-G solvation = -28501.270654 eV Core-core repulsion = 24457.226894 eV Total energy + Delta-G solvation = -4044.043760 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.42312 -39.61831 -38.10888 -36.65033 -35.89035 -35.34159 -32.74097 -32.09311 -31.33677 -30.10021 -29.56365 -28.27616 -27.05056 -25.12671 -23.44410 -23.15699 -21.90535 -21.24624 -20.90002 -20.07620 -18.58828 -17.41259 -17.22302 -16.66144 -16.43301 -16.37171 -16.01663 -15.34445 -14.94407 -14.82683 -14.59774 -14.38344 -14.15283 -13.94691 -13.87460 -13.70014 -13.60235 -13.41523 -12.81535 -12.75631 -12.67313 -12.17150 -12.09893 -12.02088 -11.89856 -11.56537 -11.40908 -11.10964 -10.98986 -10.89753 -10.79291 -10.75985 -10.61585 -10.27746 -9.97751 -9.71264 -9.57806 -9.31969 -8.50421 -8.29880 -7.70216 -7.44445 -6.10724 -4.12371 0.97754 1.45087 2.50400 2.67793 2.98799 3.05330 3.26650 3.28985 3.34774 3.37917 3.72111 4.16131 4.38901 4.50331 4.61235 4.63776 4.75580 4.89842 4.95122 5.01508 5.13561 5.17936 5.25567 5.26905 5.33706 5.38093 5.40194 5.46575 5.47974 5.66804 5.69233 5.81431 5.84735 6.08005 6.13877 6.19778 6.27598 6.31158 6.32692 6.38701 6.55076 6.83302 7.01845 7.16917 7.26817 7.38233 7.68723 7.80591 7.90484 8.02512 8.04274 8.38663 8.94790 9.52458 10.99607 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.010372 B = 0.002316 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.931783 B =12086.926722 C =14204.539420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.221 3.779 3 C -0.026 4.026 4 C 0.058 3.942 5 N -0.520 5.520 6 C 0.188 3.812 7 C -0.505 4.505 8 H 0.064 0.936 9 C 0.056 3.944 10 N -0.898 5.898 11 Si 0.896 3.104 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.272 1.272 15 C 0.037 3.963 16 C 0.114 3.886 17 H 0.102 0.898 18 O -0.538 6.538 19 C 0.027 3.973 20 O -0.303 6.303 21 C 0.157 3.843 22 C -0.224 4.224 23 C -0.031 4.031 24 C -0.149 4.149 25 C -0.194 4.194 26 C 0.037 3.963 27 N -0.598 5.598 28 H 0.415 0.585 29 C 0.134 3.866 30 C -0.179 4.179 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.032 0.968 34 H 0.069 0.931 35 H -0.009 1.009 36 H 0.039 0.961 37 H 0.262 0.738 38 H 0.092 0.908 39 H 0.033 0.967 40 H 0.374 0.626 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.131 0.869 44 H 0.125 0.875 45 H 0.145 0.855 46 H 0.168 0.832 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.213 23.070 -7.278 24.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.097 4.097 3 C -0.067 4.067 4 C -0.072 4.072 5 N -0.244 5.244 6 C 0.063 3.937 7 C -0.544 4.544 8 H 0.082 0.918 9 C -0.146 4.146 10 N -0.537 5.537 11 Si 0.724 3.276 12 H -0.209 1.209 13 H -0.213 1.213 14 H -0.197 1.197 15 C -0.092 4.092 16 C 0.053 3.947 17 H 0.119 0.881 18 O -0.342 6.342 19 C -0.049 4.049 20 O -0.216 6.216 21 C 0.110 3.890 22 C -0.243 4.243 23 C -0.050 4.050 24 C -0.153 4.153 25 C -0.220 4.220 26 C -0.088 4.088 27 N -0.202 5.202 28 H 0.252 0.748 29 C 0.026 3.974 30 C -0.201 4.201 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.051 0.949 34 H 0.088 0.912 35 H 0.009 0.991 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.110 0.890 39 H 0.051 0.949 40 H 0.221 0.779 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.149 0.851 44 H 0.143 0.857 45 H 0.162 0.838 46 H 0.186 0.814 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.520 22.693 -8.038 24.206 hybrid contribution 1.634 0.015 0.828 1.832 sum -0.886 22.707 -7.210 23.841 Atomic orbital electron populations 1.81153 1.13281 1.09485 1.09983 1.29485 0.95504 0.92448 0.92241 1.19366 0.79948 1.01793 1.05569 1.21937 0.90873 0.95988 0.98399 1.61951 1.03704 1.05071 1.53694 1.19883 0.96099 0.89755 0.87935 1.21104 0.96362 1.19777 1.17163 0.91761 1.24981 0.98384 0.96076 0.95125 1.69942 1.37054 1.24982 1.21746 0.86529 0.84700 0.77537 0.78835 1.20864 1.21333 1.19678 1.22537 1.02365 0.89799 0.94488 1.21993 0.98912 0.87350 0.86405 0.88056 1.86592 1.25405 1.87404 1.34795 1.23720 1.00176 0.90412 0.90595 1.86130 1.70732 1.15751 1.48938 1.18493 0.93241 0.83882 0.93364 1.20879 1.05106 0.97794 1.00534 1.20081 0.96772 0.91297 0.96834 1.19144 1.04385 0.94391 0.97389 1.21674 1.07064 0.93398 0.99816 1.21763 0.98682 0.92139 0.96192 1.41773 1.47069 1.06760 1.24570 0.74839 1.17769 0.99002 0.87865 0.92725 1.18913 1.09435 0.89152 1.02556 0.86462 0.86586 0.94940 0.91218 0.99082 0.94267 0.92856 0.89007 0.94866 0.77949 0.91296 0.91236 0.85132 0.85667 0.83768 0.81433 0.85465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.93 18.54 42.15 0.78 -7.15 16 2 C 0.22 3.32 15.43 -20.76 -0.32 3.00 16 3 C -0.03 -0.37 5.77 -29.52 -0.17 -0.54 16 4 C 0.06 0.87 4.79 -3.82 -0.02 0.85 16 5 N -0.52 -9.16 4.25 -236.07 -1.00 -10.16 16 6 C 0.19 4.18 4.59 -4.98 -0.02 4.16 16 7 C -0.51 -12.56 8.61 -34.44 -0.30 -12.86 16 8 H 0.06 1.57 7.66 -52.49 -0.40 1.17 16 9 C 0.06 1.46 5.46 -17.82 -0.10 1.36 16 10 N -0.90 -24.78 13.29 55.43 0.74 -24.04 16 11 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 15 C 0.04 0.56 4.45 -3.82 -0.02 0.55 16 16 C 0.11 1.50 3.16 -26.73 -0.08 1.41 16 17 H 0.10 1.37 6.28 -51.93 -0.33 1.04 16 18 O -0.54 -7.88 13.17 -40.11 -0.53 -8.41 16 19 C 0.03 0.31 4.36 37.16 0.16 0.47 16 20 O -0.30 -4.02 10.09 -24.42 -0.25 -4.26 16 21 C 0.16 1.96 6.68 -39.20 -0.26 1.70 16 22 C -0.22 -2.50 8.96 -39.80 -0.36 -2.85 16 23 C -0.03 -0.33 10.05 -39.66 -0.40 -0.73 16 24 C -0.15 -1.64 6.37 -105.10 -0.67 -2.31 16 25 C -0.19 -1.68 11.08 -37.65 -0.42 -2.10 16 26 C 0.04 0.26 11.82 -16.68 -0.20 0.06 16 27 N -0.60 -4.69 6.08 -10.64 -0.06 -4.75 16 28 H 0.42 2.05 8.96 -40.82 -0.37 1.68 16 29 C 0.13 1.47 7.27 -84.00 -0.61 0.86 16 30 C -0.18 -2.10 10.01 -39.27 -0.39 -2.50 16 31 H 0.12 1.53 8.14 -51.92 -0.42 1.11 16 32 H 0.12 1.72 6.52 -51.93 -0.34 1.38 16 33 H 0.03 0.50 8.05 -51.93 -0.42 0.08 16 34 H 0.07 0.95 5.94 -51.93 -0.31 0.64 16 35 H -0.01 -0.21 8.00 -51.93 -0.42 -0.62 16 36 H 0.04 0.92 6.24 -51.93 -0.32 0.60 16 37 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.09 1.48 7.32 -51.93 -0.38 1.10 16 39 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 40 H 0.37 4.59 9.05 45.56 0.41 5.00 16 41 H 0.07 0.72 7.65 -51.93 -0.40 0.32 16 42 H 0.07 0.71 7.64 -51.93 -0.40 0.32 16 43 H 0.13 1.26 6.24 -52.49 -0.33 0.94 16 44 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 45 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 46 H 0.17 0.54 8.06 -52.49 -0.42 0.12 16 47 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 LS Contribution 397.48 15.07 5.99 5.99 Total: -1.00 -31.98 397.48 -9.18 -41.16 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -5.66 Total: 5.94 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -4.17 Total: -9.47 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 0.45 Total: -46.11 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: -0.77 Total: -12.67 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.98 -9.18 -41.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930108010.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.315 kcal (2) G-P(sol) polarization free energy of solvation -31.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds