Wall clock time and date at job start Wed Apr 1 2020 01:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47188 * 179.97438 * 2 1 4 4 C 1.53008 * 109.47046 * 207.79379 * 3 2 1 5 5 N 1.46903 * 109.47230 * 179.54469 * 4 3 2 6 6 C 1.46899 * 110.99905 * 288.00620 * 5 4 3 7 7 C 1.50691 * 109.47195 * 160.35875 * 6 5 4 8 8 H 1.08001 * 120.00132 * 4.65807 * 7 6 5 9 9 C 1.37884 * 120.00280 * 184.65721 * 7 6 5 10 10 N 1.31518 * 119.99450 * 0.02562 * 9 7 6 11 11 Si 1.86792 * 120.00211 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47259 * 90.00114 * 11 9 7 13 13 H 1.48500 * 109.47229 * 209.99942 * 11 9 7 14 14 H 1.48500 * 109.47243 * 330.00164 * 11 9 7 15 15 C 1.46901 * 110.99743 * 164.05459 * 5 4 3 16 16 C 1.52998 * 109.46861 * 293.94948 * 15 5 4 17 17 H 1.09002 * 109.47061 * 60.00425 * 16 15 5 18 18 O 1.42894 * 109.47404 * 300.00143 * 16 15 5 19 19 C 1.53000 * 109.46850 * 180.02562 * 16 15 5 20 20 O 1.42898 * 109.47184 * 185.00212 * 19 16 15 21 21 C 1.35937 * 117.00243 * 179.97438 * 20 19 16 22 22 C 1.39286 * 119.73000 * 359.97195 * 21 20 19 23 23 C 1.36562 * 120.47577 * 179.97438 * 22 21 20 24 24 C 1.39643 * 119.84007 * 0.03268 * 23 22 21 25 25 C 1.46567 * 133.93395 * 179.97438 * 24 23 22 26 26 C 1.34188 * 107.00251 * 180.02562 * 25 24 23 27 27 N 1.36967 * 109.92255 * 359.97438 * 26 25 24 28 28 H 0.96999 * 125.06962 * 179.97438 * 27 26 25 29 29 C 1.37689 * 109.85566 * 0.02562 * 27 26 25 30 30 C 1.38205 * 119.73238 * 179.97438 * 21 20 19 31 31 H 1.09010 * 109.47261 * 87.80023 * 3 2 1 32 32 H 1.08994 * 109.47827 * 327.79353 * 3 2 1 33 33 H 1.08998 * 109.46560 * 59.54229 * 4 3 2 34 34 H 1.09002 * 109.46964 * 299.54752 * 4 3 2 35 35 H 1.09003 * 109.47510 * 280.35933 * 6 5 4 36 36 H 1.09005 * 109.47168 * 40.35428 * 6 5 4 37 37 H 0.96999 * 119.99559 * 180.02562 * 10 9 7 38 38 H 1.09002 * 109.46936 * 173.95297 * 15 5 4 39 39 H 1.08993 * 109.47045 * 53.95632 * 15 5 4 40 40 H 0.96702 * 114.00447 * 300.00442 * 18 16 15 41 41 H 1.08994 * 109.47162 * 64.99804 * 19 16 15 42 42 H 1.09007 * 109.46936 * 304.99979 * 19 16 15 43 43 H 1.07997 * 119.75621 * 0.02562 * 22 21 20 44 44 H 1.08001 * 120.07289 * 180.30109 * 23 22 21 45 45 H 1.07998 * 126.49745 * 0.02562 * 25 24 23 46 46 H 1.08001 * 125.03891 * 179.97438 * 26 25 24 47 47 H 1.08003 * 120.13104 * 359.97438 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1173 1.2770 0.6727 5 7 4.5863 1.2726 0.6824 6 6 5.1034 0.2904 1.6446 7 6 6.5339 -0.0402 1.3053 8 1 7.0351 0.4866 0.5067 9 6 7.2031 -1.0153 2.0143 10 7 6.5925 -1.6572 2.9864 11 14 8.9760 -1.4256 1.5931 12 1 9.8863 -0.5684 2.3944 13 1 9.2407 -2.8536 1.9029 14 1 9.2108 -1.1809 0.1474 15 6 5.1149 2.6140 0.9640 16 6 4.7614 3.5540 -0.1903 17 1 3.6780 3.6057 -0.2980 18 8 5.3375 3.0595 -1.4009 19 6 5.3125 4.9509 0.1026 20 8 4.8838 5.8556 -0.9171 21 6 5.2894 7.1483 -0.8057 22 6 6.0861 7.5319 0.2705 23 6 6.5026 8.8263 0.3971 24 6 6.1275 9.7735 -0.5579 25 6 6.3877 11.2060 -0.7262 26 6 5.7587 11.5900 -1.8477 27 7 5.1167 10.5199 -2.4124 28 1 4.5943 10.5510 -3.2291 29 6 5.3228 9.3939 -1.6473 30 6 4.9078 8.0711 -1.7611 31 1 2.9713 -0.0386 -1.0270 32 1 2.9717 -0.8686 0.5477 33 1 2.7473 1.3204 1.6970 34 1 2.7602 2.1462 0.1203 35 1 5.0557 0.7073 2.6506 36 1 4.5000 -0.6162 1.5981 37 1 7.0634 -2.3428 3.4854 38 1 6.1984 2.5624 1.0717 39 1 4.6756 2.9912 1.8874 40 1 6.3015 2.9870 -1.3769 41 1 6.4017 4.9151 0.1222 42 1 4.9428 5.2919 1.0697 43 1 6.3772 6.8003 1.0096 44 1 7.1242 9.1156 1.2315 45 1 6.9744 11.8336 -0.0718 46 1 5.7586 12.5939 -2.2459 47 1 4.2903 7.7663 -2.5931 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930108010.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:03 Heat of formation + Delta-G solvation = -17.176199 kcal Electronic energy + Delta-G solvation = -28502.195533 eV Core-core repulsion = 24457.226894 eV Total energy + Delta-G solvation = -4044.968639 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.12512 -40.53237 -39.33682 -37.84047 -37.01814 -36.37322 -34.62937 -32.88683 -32.51140 -31.28993 -30.34808 -29.26336 -28.47663 -26.33466 -24.91624 -24.08418 -23.02891 -22.15528 -21.54796 -21.41484 -19.40075 -18.59614 -18.38500 -18.05163 -17.49526 -17.42099 -16.86091 -16.74952 -16.10086 -16.04432 -15.90169 -15.39528 -15.19681 -15.15013 -14.80809 -14.73748 -14.42251 -14.27688 -14.18174 -14.00278 -13.72506 -13.58889 -13.39862 -13.17198 -12.91450 -12.73868 -12.72148 -12.58094 -12.48727 -12.26606 -12.03855 -11.92963 -11.68801 -11.61694 -11.37219 -11.11272 -10.80109 -10.46651 -10.44344 -9.05665 -8.92766 -8.43785 -8.08772 -6.15715 0.21201 0.64253 1.48785 1.51710 1.61063 1.73395 1.80996 1.87310 1.91992 2.47810 2.53690 2.91269 2.93590 3.25279 3.50241 3.67920 3.80092 3.96041 4.01496 4.03761 4.12853 4.17295 4.21128 4.28095 4.32700 4.45207 4.49502 4.53025 4.60435 4.63468 4.78029 4.86900 4.98227 5.02977 5.05773 5.07368 5.18662 5.33034 5.36055 5.39464 5.53139 5.60880 5.78725 5.86497 6.10627 6.18127 6.39319 6.51705 6.58289 6.66483 6.75081 6.98584 7.01850 7.53263 9.01119 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.010372 B = 0.002316 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.931783 B =12086.926722 C =14204.539420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C 0.245 3.755 3 C -0.016 4.016 4 C 0.058 3.942 5 N -0.522 5.522 6 C 0.201 3.799 7 C -0.507 4.507 8 H 0.067 0.933 9 C 0.004 3.996 10 N -0.935 5.935 11 Si 0.957 3.043 12 H -0.278 1.278 13 H -0.292 1.292 14 H -0.263 1.263 15 C 0.039 3.961 16 C 0.126 3.874 17 H 0.101 0.899 18 O -0.554 6.554 19 C 0.032 3.968 20 O -0.320 6.320 21 C 0.135 3.865 22 C -0.232 4.232 23 C -0.039 4.039 24 C -0.168 4.168 25 C -0.219 4.219 26 C 0.054 3.946 27 N -0.591 5.591 28 H 0.428 0.572 29 C 0.115 3.885 30 C -0.190 4.190 31 H 0.133 0.867 32 H 0.109 0.891 33 H 0.030 0.970 34 H 0.089 0.911 35 H -0.035 1.035 36 H 0.025 0.975 37 H 0.260 0.740 38 H 0.081 0.919 39 H 0.041 0.959 40 H 0.382 0.618 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.141 0.859 44 H 0.144 0.856 45 H 0.162 0.838 46 H 0.210 0.790 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.561 25.330 -8.387 26.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.173 5.173 2 C -0.072 4.072 3 C -0.056 4.056 4 C -0.072 4.072 5 N -0.246 5.246 6 C 0.075 3.925 7 C -0.546 4.546 8 H 0.086 0.914 9 C -0.194 4.194 10 N -0.576 5.576 11 Si 0.783 3.217 12 H -0.204 1.204 13 H -0.218 1.218 14 H -0.188 1.188 15 C -0.090 4.090 16 C 0.066 3.934 17 H 0.119 0.881 18 O -0.360 6.360 19 C -0.044 4.044 20 O -0.233 6.233 21 C 0.088 3.912 22 C -0.251 4.251 23 C -0.058 4.058 24 C -0.173 4.173 25 C -0.244 4.244 26 C -0.071 4.071 27 N -0.196 5.196 28 H 0.267 0.733 29 C 0.006 3.994 30 C -0.211 4.211 31 H 0.151 0.849 32 H 0.127 0.873 33 H 0.048 0.952 34 H 0.107 0.893 35 H -0.017 1.017 36 H 0.043 0.957 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.059 0.941 40 H 0.231 0.769 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.159 0.841 44 H 0.162 0.838 45 H 0.180 0.820 46 H 0.227 0.773 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.750 24.983 -9.179 26.674 hybrid contribution 1.375 -0.547 1.125 1.859 sum -0.375 24.436 -8.054 25.732 Atomic orbital electron populations 1.81181 1.14275 1.10625 1.11265 1.29484 0.95312 0.91348 0.91080 1.19310 0.79128 1.00979 1.06219 1.21994 0.89204 0.97230 0.98738 1.61832 1.05291 1.05614 1.51902 1.19555 0.95096 0.90294 0.87573 1.21462 0.97554 1.19032 1.16507 0.91450 1.25752 1.02126 0.96340 0.95180 1.70064 1.38592 1.25858 1.23085 0.85563 0.80328 0.76866 0.78927 1.20387 1.21793 1.18766 1.22535 1.01646 0.88950 0.95841 1.21812 0.98820 0.87764 0.85001 0.88148 1.86557 1.26375 1.87627 1.35417 1.23631 1.00705 0.89236 0.90849 1.86068 1.71330 1.16363 1.49587 1.18679 0.94475 0.83626 0.94391 1.21025 1.05124 0.98447 1.00511 1.20370 0.96840 0.91118 0.97444 1.19603 1.04362 0.95848 0.97455 1.22005 1.08570 0.92533 1.01271 1.22460 0.96355 0.93214 0.95113 1.41902 1.46835 1.06155 1.24741 0.73307 1.17905 0.99559 0.88319 0.93647 1.19066 1.09666 0.89774 1.02643 0.84920 0.87347 0.95208 0.89307 1.01682 0.95742 0.93088 0.90088 0.94113 0.76916 0.90310 0.89958 0.84111 0.83779 0.82024 0.77324 0.85307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -16.72 18.54 20.00 0.37 -16.35 16 2 C 0.24 7.14 15.43 89.44 1.38 8.52 16 3 C -0.02 -0.44 5.77 28.79 0.17 -0.27 16 4 C 0.06 1.68 4.79 86.31 0.41 2.10 16 5 N -0.52 -18.12 4.25 -900.78 -3.83 -21.94 16 6 C 0.20 9.03 4.59 85.55 0.39 9.43 16 7 C -0.51 -25.18 8.61 25.60 0.22 -24.96 16 8 H 0.07 3.24 7.66 -2.91 -0.02 3.22 16 9 C 0.00 0.20 5.46 84.66 0.46 0.66 16 10 N -0.93 -52.35 13.29 21.45 0.28 -52.07 16 11 Si 0.96 41.28 29.54 68.60 2.03 43.31 16 12 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 13 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 14 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 15 C 0.04 1.15 4.45 86.30 0.38 1.54 16 16 C 0.13 3.19 3.16 30.59 0.10 3.28 16 17 H 0.10 2.57 6.28 -2.39 -0.01 2.55 16 18 O -0.55 -15.63 13.17 -144.31 -1.90 -17.53 16 19 C 0.03 0.70 4.36 71.98 0.31 1.01 16 20 O -0.32 -8.36 10.09 -88.17 -0.89 -9.25 16 21 C 0.13 3.35 6.68 22.51 0.15 3.50 16 22 C -0.23 -5.06 8.96 22.13 0.20 -4.86 16 23 C -0.04 -0.80 10.05 22.22 0.22 -0.58 16 24 C -0.17 -3.53 6.37 -20.18 -0.13 -3.66 16 25 C -0.22 -3.33 11.08 23.52 0.26 -3.07 16 26 C 0.05 0.58 11.82 82.97 0.98 1.56 16 27 N -0.59 -8.11 6.08 -187.57 -1.14 -9.25 16 28 H 0.43 3.36 8.96 -92.71 -0.83 2.53 16 29 C 0.11 2.40 7.27 39.02 0.28 2.69 16 30 C -0.19 -4.46 10.01 22.47 0.22 -4.23 16 31 H 0.13 3.24 8.14 -2.38 -0.02 3.22 16 32 H 0.11 3.20 6.52 -2.39 -0.02 3.18 16 33 H 0.03 0.89 8.05 -2.39 -0.02 0.88 16 34 H 0.09 2.28 5.94 -2.39 -0.01 2.26 16 35 H -0.03 -1.72 8.00 -2.39 -0.02 -1.74 16 36 H 0.02 1.17 6.24 -2.38 -0.01 1.16 16 37 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 38 H 0.08 2.58 7.32 -2.39 -0.02 2.56 16 39 H 0.04 1.15 8.12 -2.39 -0.02 1.13 16 40 H 0.38 9.04 9.05 -74.06 -0.67 8.37 16 41 H 0.08 1.57 7.65 -2.39 -0.02 1.55 16 42 H 0.08 1.59 7.64 -2.38 -0.02 1.57 16 43 H 0.14 2.61 6.24 -2.91 -0.02 2.60 16 44 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 45 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 46 H 0.21 0.41 8.06 -2.91 -0.02 0.38 16 47 H 0.13 2.80 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -68.78 397.48 0.47 -68.30 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -0.48 Total: 22.12 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 6.02 Total: -7.34 kcal Atomic # 7 Polarization: -95.30 SS G_CDS: -4.31 Total: -99.61 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -2.79 Total: -26.78 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -68.78 0.47 -68.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930108010.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.128 kcal (2) G-P(sol) polarization free energy of solvation -68.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds