Wall clock time and date at job start Wed Apr 1 2020 02:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 119.99777 * 2 1 4 4 H 1.48502 * 109.47284 * 240.00209 * 3 2 1 5 5 H 1.48504 * 109.46972 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47110 * 120.00061 * 3 2 1 7 7 C 1.37873 * 120.00666 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00638 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99556 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.46882 * 180.02562 * 9 7 2 11 11 C 1.38277 * 119.93258 * 89.99643 * 10 9 7 12 12 C 1.38114 * 120.06773 * 180.02562 * 11 10 9 13 13 C 1.38866 * 119.93496 * 0.02562 * 12 11 10 14 14 N 1.39944 * 120.07071 * 179.97438 * 13 12 11 15 15 C 1.34776 * 120.00114 * 35.08960 * 14 13 12 16 16 O 1.21583 * 119.99759 * 355.38069 * 15 14 13 17 17 N 1.34777 * 119.99617 * 175.36892 * 15 14 13 18 18 C 1.46981 * 127.03330 * 359.97438 * 17 15 14 19 19 C 1.50777 * 106.56312 * 179.78667 * 18 17 15 20 20 O 1.21276 * 125.42804 * 180.28138 * 19 18 17 21 21 N 1.34303 * 109.14695 * 0.39629 * 19 18 17 22 22 C 1.46499 * 124.85129 * 179.85382 * 21 19 18 23 23 C 1.53006 * 109.46973 * 269.69989 * 22 21 19 24 24 C 1.52999 * 117.49845 * 243.61928 * 23 22 21 25 25 C 1.52997 * 60.00229 * 252.51540 * 24 23 22 26 26 C 1.46221 * 110.29340 * 359.59633 * 21 19 18 27 27 C 1.38863 * 119.85665 * 0.25421 * 13 12 11 28 28 C 1.38121 * 119.93071 * 359.48714 * 27 13 12 29 29 H 0.96999 * 120.00365 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47444 * 60.00154 * 9 7 2 31 31 H 1.09006 * 109.46758 * 299.99694 * 9 7 2 32 32 H 1.07998 * 119.96650 * 0.02562 * 11 10 9 33 33 H 1.08002 * 120.03460 * 179.97438 * 12 11 10 34 34 H 0.97007 * 119.99675 * 215.09121 * 14 13 12 35 35 H 1.09001 * 110.03539 * 299.28627 * 18 17 15 36 36 H 1.08996 * 110.04372 * 60.68464 * 18 17 15 37 37 H 1.09002 * 109.47344 * 29.70213 * 22 21 19 38 38 H 1.09000 * 109.47049 * 149.70286 * 22 21 19 39 39 H 1.09001 * 115.55100 * 29.33638 * 23 22 21 40 40 H 1.08997 * 117.49905 * 0.02562 * 24 23 22 41 41 H 1.09006 * 117.49582 * 145.02457 * 24 23 22 42 42 H 1.09005 * 117.50101 * 252.51604 * 25 24 23 43 43 H 1.08990 * 117.49927 * 107.49128 * 25 24 23 44 44 H 1.08995 * 109.75756 * 119.91593 * 26 21 19 45 45 H 1.09003 * 109.75051 * 240.60592 * 26 21 19 46 46 H 1.07997 * 120.03703 * 179.72137 * 27 13 12 47 47 H 1.08000 * 119.96569 * 180.25357 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6445 -0.0005 11 6 2.6790 -4.1688 1.1978 12 6 3.5770 -5.2182 1.2011 13 6 4.0299 -5.7464 -0.0007 14 7 4.9403 -6.8093 -0.0007 15 6 4.8687 -7.7578 0.9541 16 8 4.0687 -7.6465 1.8628 17 7 5.6839 -8.8298 0.9013 18 6 6.7006 -9.1193 -0.1199 19 6 7.3424 -10.4265 0.2711 20 8 8.2330 -10.9819 -0.3366 21 7 6.7690 -10.8790 1.3981 22 6 7.1294 -12.1253 2.0786 23 6 6.2700 -13.2693 1.5366 24 6 5.3139 -13.9581 2.5124 25 6 6.5760 -14.6818 2.0389 26 6 5.7378 -9.9471 1.8520 27 6 3.5821 -5.2137 -1.2024 28 6 2.6800 -4.1678 -1.1990 29 1 -0.4851 0.8400 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6249 -2.5570 0.8898 32 1 2.3267 -3.7574 2.1321 33 1 3.9272 -5.6270 2.1373 34 1 5.6228 -6.8633 -0.6880 35 1 6.2311 -9.2082 -1.0996 36 1 7.4502 -8.3282 -0.1357 37 1 8.1820 -12.3455 1.9002 38 1 6.9573 -12.0174 3.1495 39 1 5.9435 -13.1627 0.5022 40 1 5.2967 -13.5960 3.5403 41 1 4.3578 -14.3047 2.1200 42 1 6.4503 -15.5045 1.3349 43 1 7.3893 -14.7960 2.7554 44 1 4.7723 -10.4520 1.8821 45 1 5.9895 -9.5742 2.8448 46 1 3.9360 -5.6193 -2.1387 47 1 2.3282 -3.7559 -2.1333 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932568420.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:57 Heat of formation + Delta-G solvation = 13.989311 kcal Electronic energy + Delta-G solvation = -28375.954583 eV Core-core repulsion = 24332.337382 eV Total energy + Delta-G solvation = -4043.617201 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.57507 -40.18293 -38.40344 -37.98727 -36.96741 -35.02083 -34.26117 -32.96373 -30.56023 -30.31266 -29.35761 -28.27552 -26.63925 -25.08949 -23.19698 -22.89547 -22.38160 -21.81666 -20.97611 -20.44202 -20.02303 -18.80057 -17.38199 -17.25245 -16.87357 -16.31057 -16.26230 -15.84780 -15.56524 -15.12510 -14.83968 -14.79836 -14.50884 -14.24654 -14.16385 -13.83407 -13.40583 -13.27102 -13.21430 -13.06954 -12.82368 -12.57754 -12.25329 -12.03984 -12.02490 -11.44040 -11.28665 -11.09934 -10.90132 -10.69654 -10.57240 -10.56357 -10.42352 -10.26493 -9.94405 -9.80680 -9.46816 -9.32082 -9.04539 -8.41518 -8.30122 -7.42273 -6.02983 -4.07192 1.66834 1.88261 1.93711 2.06034 2.38312 2.90908 3.23623 3.32423 3.36687 3.39727 3.49790 3.62472 4.11844 4.27673 4.37535 4.41125 4.46460 4.55310 4.66914 4.68018 4.80676 4.86922 4.97064 5.06093 5.13562 5.16813 5.30868 5.37590 5.40577 5.49669 5.56058 5.58709 5.76585 5.87860 6.01294 6.09648 6.18581 6.40301 6.44526 6.64597 6.87237 6.90476 7.15947 7.20537 7.43716 7.51673 7.57735 7.70065 7.86706 7.92520 8.23666 8.32959 8.97882 9.56528 11.06534 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.028632 B = 0.001740 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.678820 B =16092.438247 C =16496.186787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.512 4.512 8 H 0.057 0.943 9 C 0.047 3.953 10 C -0.041 4.041 11 C -0.109 4.109 12 C -0.115 4.115 13 C 0.115 3.885 14 N -0.673 5.673 15 C 0.736 3.264 16 O -0.556 6.556 17 N -0.646 5.646 18 C 0.064 3.936 19 C 0.523 3.477 20 O -0.511 6.511 21 N -0.622 5.622 22 C 0.165 3.835 23 C -0.177 4.177 24 C -0.177 4.177 25 C -0.171 4.171 26 C 0.356 3.644 27 C -0.141 4.141 28 C -0.108 4.108 29 H 0.262 0.738 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.122 0.878 33 H 0.130 0.870 34 H 0.403 0.597 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.114 0.886 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.537 -26.915 2.724 30.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.550 4.550 8 H 0.075 0.925 9 C 0.011 3.989 10 C -0.041 4.041 11 C -0.127 4.127 12 C -0.135 4.135 13 C 0.023 3.977 14 N -0.319 5.319 15 C 0.439 3.561 16 O -0.430 6.430 17 N -0.388 5.388 18 C -0.062 4.062 19 C 0.309 3.691 20 O -0.385 6.385 21 N -0.357 5.357 22 C 0.044 3.956 23 C -0.196 4.196 24 C -0.214 4.214 25 C -0.208 4.208 26 C 0.147 3.853 27 C -0.161 4.161 28 C -0.127 4.127 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.140 0.860 33 H 0.148 0.852 34 H 0.238 0.762 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.125 0.875 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.102 0.898 45 H 0.101 0.899 46 H 0.132 0.868 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 14.224 -27.024 3.133 30.699 hybrid contribution 0.792 0.852 -0.471 1.255 sum 15.016 -26.172 2.662 30.291 Atomic orbital electron populations 1.69944 1.06023 1.26910 1.50408 1.25007 0.94872 0.99215 0.95204 0.86603 0.79531 0.82870 0.78698 1.20197 1.21258 1.20190 1.21030 0.93019 0.89883 1.51113 0.92493 1.18357 0.92582 0.89561 0.98441 1.20740 0.96325 0.95184 0.91885 1.21019 0.97529 0.95623 0.98547 1.21140 0.99177 0.96198 0.96982 1.17277 0.95740 0.90159 0.94513 1.42359 1.34955 1.23833 1.30797 1.14997 0.79986 0.78045 0.83088 1.90998 1.39166 1.77434 1.35439 1.47152 1.40069 1.22918 1.28696 1.21958 0.92708 0.97304 0.94254 1.20419 0.82128 0.86081 0.80461 1.90808 1.29330 1.62478 1.55898 1.48378 1.37854 1.22570 1.26944 1.20986 0.99233 0.79365 0.96002 1.22765 1.03253 0.93624 0.99967 1.23103 0.94817 1.04055 0.99428 1.22945 0.99722 0.94458 1.03705 1.21056 0.91826 0.81285 0.91134 1.20718 1.00176 0.99837 0.95408 1.20878 0.97341 0.95868 0.98596 0.92797 0.95287 0.95261 0.86018 0.85222 0.76240 0.87295 0.87359 0.88768 0.89374 0.87470 0.88391 0.88611 0.88504 0.88426 0.89828 0.89926 0.86794 0.85925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -14.21 9.09 -34.44 -0.31 -14.52 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.05 1.21 5.10 -29.03 -0.15 1.06 16 10 C -0.04 -0.88 5.07 -104.59 -0.53 -1.41 16 11 C -0.11 -2.16 9.69 -39.61 -0.38 -2.55 16 12 C -0.11 -2.06 8.70 -39.39 -0.34 -2.40 16 13 C 0.12 1.82 6.30 -83.69 -0.53 1.29 16 14 N -0.67 -8.01 5.30 -14.23 -0.08 -8.09 16 15 C 0.74 9.23 8.38 -86.92 -0.73 8.50 16 16 O -0.56 -9.06 14.18 5.29 0.08 -8.98 16 17 N -0.65 -5.78 3.36 -184.00 -0.62 -6.40 16 18 C 0.06 0.44 6.36 -4.89 -0.03 0.41 16 19 C 0.52 4.52 8.13 -11.16 -0.09 4.43 16 20 O -0.51 -6.07 17.67 5.56 0.10 -5.97 16 21 N -0.62 -4.36 2.93 -177.57 -0.52 -4.88 16 22 C 0.17 0.89 6.27 -4.04 -0.03 0.87 16 23 C -0.18 -0.99 6.01 -90.62 -0.54 -1.54 16 24 C -0.18 -0.83 10.18 -26.73 -0.27 -1.10 16 25 C -0.17 -0.78 10.25 -26.73 -0.27 -1.05 16 26 C 0.36 2.65 7.57 -63.72 -0.48 2.17 16 27 C -0.14 -2.20 9.97 -39.39 -0.39 -2.60 16 28 C -0.11 -2.03 9.69 -39.61 -0.38 -2.41 16 29 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.03 0.77 8.09 -51.93 -0.42 0.35 16 31 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 32 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 33 H 0.13 2.31 6.22 -52.49 -0.33 1.98 16 34 H 0.40 3.41 7.91 -40.82 -0.32 3.09 16 35 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.55 7.97 -51.93 -0.41 0.14 16 38 H 0.09 0.31 7.88 -51.93 -0.41 -0.10 16 39 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.10 0.38 8.03 -51.93 -0.42 -0.04 16 41 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 47 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 399.34 15.07 6.02 6.02 Total: -1.00 -33.92 399.34 -11.80 -45.71 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.92 Total: 1.04 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -5.57 Total: -9.30 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: -0.48 Total: -44.90 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.17 Total: -14.95 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.92 -11.80 -45.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932568420.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.702 kcal (2) G-P(sol) polarization free energy of solvation -33.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds