Wall clock time and date at job start Wed Apr 1 2020 02:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 119.99777 * 2 1 4 4 H 1.48502 * 109.47284 * 240.00209 * 3 2 1 5 5 H 1.48504 * 109.46972 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47110 * 120.00061 * 3 2 1 7 7 C 1.37873 * 120.00666 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00638 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99556 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.46882 * 180.02562 * 9 7 2 11 11 C 1.38277 * 119.93258 * 89.99643 * 10 9 7 12 12 C 1.38114 * 120.06773 * 180.02562 * 11 10 9 13 13 C 1.38866 * 119.93496 * 0.02562 * 12 11 10 14 14 N 1.39944 * 120.07071 * 179.97438 * 13 12 11 15 15 C 1.34776 * 120.00114 * 35.08960 * 14 13 12 16 16 O 1.21583 * 119.99759 * 355.38069 * 15 14 13 17 17 N 1.34777 * 119.99617 * 175.36892 * 15 14 13 18 18 C 1.46981 * 127.03330 * 359.97438 * 17 15 14 19 19 C 1.50777 * 106.56312 * 179.78667 * 18 17 15 20 20 O 1.21276 * 125.42804 * 180.28138 * 19 18 17 21 21 N 1.34303 * 109.14695 * 0.39629 * 19 18 17 22 22 C 1.46499 * 124.85129 * 179.85382 * 21 19 18 23 23 C 1.53006 * 109.46973 * 269.69989 * 22 21 19 24 24 C 1.52999 * 117.49845 * 243.61928 * 23 22 21 25 25 C 1.52997 * 60.00229 * 252.51540 * 24 23 22 26 26 C 1.46221 * 110.29340 * 359.59633 * 21 19 18 27 27 C 1.38863 * 119.85665 * 0.25421 * 13 12 11 28 28 C 1.38121 * 119.93071 * 359.48714 * 27 13 12 29 29 H 0.96999 * 120.00365 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47444 * 60.00154 * 9 7 2 31 31 H 1.09006 * 109.46758 * 299.99694 * 9 7 2 32 32 H 1.07998 * 119.96650 * 0.02562 * 11 10 9 33 33 H 1.08002 * 120.03460 * 179.97438 * 12 11 10 34 34 H 0.97007 * 119.99675 * 215.09121 * 14 13 12 35 35 H 1.09001 * 110.03539 * 299.28627 * 18 17 15 36 36 H 1.08996 * 110.04372 * 60.68464 * 18 17 15 37 37 H 1.09002 * 109.47344 * 29.70213 * 22 21 19 38 38 H 1.09000 * 109.47049 * 149.70286 * 22 21 19 39 39 H 1.09001 * 115.55100 * 29.33638 * 23 22 21 40 40 H 1.08997 * 117.49905 * 0.02562 * 24 23 22 41 41 H 1.09006 * 117.49582 * 145.02457 * 24 23 22 42 42 H 1.09005 * 117.50101 * 252.51604 * 25 24 23 43 43 H 1.08990 * 117.49927 * 107.49128 * 25 24 23 44 44 H 1.08995 * 109.75756 * 119.91593 * 26 21 19 45 45 H 1.09003 * 109.75051 * 240.60592 * 26 21 19 46 46 H 1.07997 * 120.03703 * 179.72137 * 27 13 12 47 47 H 1.08000 * 119.96569 * 180.25357 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6445 -0.0005 11 6 2.6790 -4.1688 1.1978 12 6 3.5770 -5.2182 1.2011 13 6 4.0299 -5.7464 -0.0007 14 7 4.9403 -6.8093 -0.0007 15 6 4.8687 -7.7578 0.9541 16 8 4.0687 -7.6465 1.8628 17 7 5.6839 -8.8298 0.9013 18 6 6.7006 -9.1193 -0.1199 19 6 7.3424 -10.4265 0.2711 20 8 8.2330 -10.9819 -0.3366 21 7 6.7690 -10.8790 1.3981 22 6 7.1294 -12.1253 2.0786 23 6 6.2700 -13.2693 1.5366 24 6 5.3139 -13.9581 2.5124 25 6 6.5760 -14.6818 2.0389 26 6 5.7378 -9.9471 1.8520 27 6 3.5821 -5.2137 -1.2024 28 6 2.6800 -4.1678 -1.1990 29 1 -0.4851 0.8400 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6249 -2.5570 0.8898 32 1 2.3267 -3.7574 2.1321 33 1 3.9272 -5.6270 2.1373 34 1 5.6228 -6.8633 -0.6880 35 1 6.2311 -9.2082 -1.0996 36 1 7.4502 -8.3282 -0.1357 37 1 8.1820 -12.3455 1.9002 38 1 6.9573 -12.0174 3.1495 39 1 5.9435 -13.1627 0.5022 40 1 5.2967 -13.5960 3.5403 41 1 4.3578 -14.3047 2.1200 42 1 6.4503 -15.5045 1.3349 43 1 7.3893 -14.7960 2.7554 44 1 4.7723 -10.4520 1.8821 45 1 5.9895 -9.5742 2.8448 46 1 3.9360 -5.6193 -2.1387 47 1 2.3282 -3.7559 -2.1333 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932568420.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:56 Heat of formation + Delta-G solvation = -5.261139 kcal Electronic energy + Delta-G solvation = -28376.789345 eV Core-core repulsion = 24332.337382 eV Total energy + Delta-G solvation = -4044.451963 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.34330 -41.17386 -39.66446 -38.45771 -37.77995 -36.30945 -35.20425 -34.67268 -32.16092 -31.73271 -30.09324 -29.04399 -28.11412 -26.00482 -24.85061 -23.77572 -23.26727 -22.45884 -22.10952 -21.36784 -20.93962 -19.70254 -18.49056 -18.33994 -18.00210 -17.58803 -16.99653 -16.81056 -16.47367 -16.46080 -15.90265 -15.84326 -15.51663 -15.32090 -15.02760 -14.59017 -14.57059 -14.44660 -14.24760 -13.99129 -13.86820 -13.74818 -13.61398 -13.25352 -13.12794 -12.70519 -12.58505 -12.46080 -12.37149 -12.09021 -11.78354 -11.59171 -11.50899 -11.32975 -11.15351 -10.95539 -10.91508 -10.57136 -10.50106 -9.72876 -9.72162 -8.84761 -8.15533 -6.30137 0.47877 0.61626 0.94909 1.23397 1.41988 1.44699 1.52814 1.75700 1.88641 2.42399 2.60855 2.84518 3.01644 3.04654 3.13831 3.70841 3.78569 3.98949 4.02368 4.09165 4.18281 4.20074 4.23683 4.27037 4.30856 4.42828 4.46897 4.56765 4.63539 4.67271 4.70487 4.73713 4.79963 4.99004 5.02659 5.17293 5.24555 5.25685 5.35186 5.36916 5.45550 5.49552 5.63652 5.77197 5.79294 5.81856 6.12543 6.15407 6.28409 6.63837 6.80393 6.82612 7.27245 7.38285 8.92149 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.028632 B = 0.001740 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.678820 B =16092.438247 C =16496.186787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.965 3.035 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.056 3.944 10 C -0.074 4.074 11 C -0.120 4.120 12 C -0.120 4.120 13 C 0.135 3.865 14 N -0.660 5.660 15 C 0.738 3.262 16 O -0.596 6.596 17 N -0.638 5.638 18 C 0.066 3.934 19 C 0.520 3.480 20 O -0.548 6.548 21 N -0.615 5.615 22 C 0.163 3.837 23 C -0.186 4.186 24 C -0.173 4.173 25 C -0.168 4.168 26 C 0.355 3.645 27 C -0.124 4.124 28 C -0.113 4.113 29 H 0.265 0.735 30 H 0.007 0.993 31 H -0.001 1.001 32 H 0.110 0.890 33 H 0.131 0.869 34 H 0.424 0.576 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.088 0.912 40 H 0.109 0.891 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.109 0.891 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.160 0.840 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.980 -28.045 2.180 32.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.566 4.566 8 H 0.075 0.925 9 C 0.019 3.981 10 C -0.075 4.075 11 C -0.139 4.139 12 C -0.140 4.140 13 C 0.041 3.959 14 N -0.309 5.309 15 C 0.441 3.559 16 O -0.473 6.473 17 N -0.379 5.379 18 C -0.060 4.060 19 C 0.307 3.693 20 O -0.425 6.425 21 N -0.349 5.349 22 C 0.043 3.957 23 C -0.206 4.206 24 C -0.210 4.210 25 C -0.205 4.205 26 C 0.146 3.854 27 C -0.144 4.144 28 C -0.132 4.132 29 H 0.074 0.926 30 H 0.025 0.975 31 H 0.017 0.983 32 H 0.128 0.872 33 H 0.149 0.851 34 H 0.263 0.737 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.108 0.892 38 H 0.129 0.871 39 H 0.106 0.894 40 H 0.128 0.872 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.128 0.872 44 H 0.104 0.896 45 H 0.110 0.890 46 H 0.177 0.823 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 16.711 -28.207 2.581 32.887 hybrid contribution 0.072 1.007 -0.278 1.047 sum 16.783 -27.200 2.303 32.044 Atomic orbital electron populations 1.70077 1.07693 1.27934 1.51363 1.25929 0.95745 1.03095 0.94655 0.85501 0.78275 0.78118 0.79159 1.19016 1.20727 1.19485 1.21377 0.93176 0.91179 1.50852 0.92516 1.18098 0.92932 0.91227 0.95824 1.20416 0.97629 0.95590 0.93864 1.20929 0.98625 0.96734 0.97641 1.21145 0.98979 0.95662 0.98215 1.17288 0.94925 0.90022 0.93703 1.42126 1.34717 1.22661 1.31373 1.14980 0.79917 0.78552 0.82479 1.90987 1.40975 1.78411 1.36976 1.46941 1.39488 1.22099 1.29384 1.22139 0.92594 0.96976 0.94253 1.20658 0.81687 0.86480 0.80429 1.90796 1.31056 1.63604 1.57028 1.48462 1.37188 1.22779 1.26513 1.21137 0.98876 0.78584 0.97127 1.22668 1.04204 0.94465 0.99246 1.23159 0.94624 1.03540 0.99682 1.23030 1.00078 0.93698 1.03715 1.21159 0.92059 0.80942 0.91191 1.20997 0.98241 0.98030 0.97156 1.20960 0.98015 0.96740 0.97492 0.92648 0.97511 0.98261 0.87215 0.85149 0.73743 0.85288 0.85183 0.89234 0.87102 0.89382 0.87228 0.88933 0.88597 0.87219 0.89607 0.88971 0.82278 0.85611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.31 13.29 21.45 0.28 -56.03 16 2 C 0.00 0.22 5.46 84.65 0.46 0.68 16 3 Si 0.97 44.19 29.54 68.60 2.03 46.22 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.53 -30.16 9.09 25.60 0.23 -29.93 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.06 3.03 5.10 29.10 0.15 3.18 16 10 C -0.07 -3.29 5.07 -19.84 -0.10 -3.39 16 11 C -0.12 -4.95 9.69 22.25 0.22 -4.74 16 12 C -0.12 -4.21 8.70 22.39 0.19 -4.02 16 13 C 0.13 3.88 6.30 38.15 0.24 4.12 16 14 N -0.66 -13.35 5.30 -317.19 -1.68 -15.03 16 15 C 0.74 16.50 8.38 179.05 1.50 18.00 16 16 O -0.60 -18.49 14.18 -3.98 -0.06 -18.55 16 17 N -0.64 -9.55 3.36 -854.32 -2.87 -12.42 16 18 C 0.07 0.68 6.36 85.57 0.54 1.22 16 19 C 0.52 7.95 8.13 87.76 0.71 8.67 16 20 O -0.55 -12.34 17.67 -3.02 -0.05 -12.39 16 21 N -0.62 -7.42 2.93 -834.37 -2.44 -9.86 16 22 C 0.16 1.48 6.27 86.38 0.54 2.02 16 23 C -0.19 -1.88 6.01 -10.79 -0.06 -1.95 16 24 C -0.17 -1.35 10.18 30.59 0.31 -1.04 16 25 C -0.17 -1.29 10.25 30.59 0.31 -0.98 16 26 C 0.36 4.47 7.57 170.95 1.29 5.76 16 27 C -0.12 -3.49 9.97 22.39 0.22 -3.27 16 28 C -0.11 -4.16 9.69 22.25 0.22 -3.95 16 29 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 30 H 0.01 0.37 8.09 -2.39 -0.02 0.36 16 31 H 0.00 -0.05 8.08 -2.38 -0.02 -0.07 16 32 H 0.11 4.60 8.06 -2.91 -0.02 4.57 16 33 H 0.13 4.58 6.22 -2.91 -0.02 4.56 16 34 H 0.42 5.13 7.91 -92.70 -0.73 4.40 16 35 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.13 0.86 8.14 -2.39 -0.02 0.85 16 37 H 0.09 0.93 7.97 -2.39 -0.02 0.91 16 38 H 0.11 0.49 7.88 -2.39 -0.02 0.48 16 39 H 0.09 1.23 8.14 -2.39 -0.02 1.22 16 40 H 0.11 0.60 8.03 -2.39 -0.02 0.58 16 41 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 42 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 43 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 47 H 0.13 4.46 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -76.36 399.34 2.44 -73.91 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.25 Total: 13.75 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: 6.99 Total: -9.60 kcal Atomic # 7 Polarization: -86.63 SS G_CDS: -6.71 Total: -93.34 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -0.11 Total: -30.94 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -76.36 2.44 -73.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932568420.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.652 kcal (2) G-P(sol) polarization free energy of solvation -76.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds