Wall clock time and date at job start Wed Apr 1 2020 02:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99769 * 2 1 4 4 H 1.48498 * 109.47516 * 239.99836 * 3 2 1 5 5 H 1.48496 * 109.47397 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47121 * 119.99834 * 3 2 1 7 7 C 1.37872 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99934 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00070 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47333 * 179.97438 * 9 7 2 11 11 C 1.38288 * 119.93153 * 89.99549 * 10 9 7 12 12 C 1.38114 * 120.06963 * 179.74921 * 11 10 9 13 13 C 1.38857 * 119.93054 * 0.25313 * 12 11 10 14 14 N 1.39943 * 120.07006 * 179.97438 * 13 12 11 15 15 C 1.34778 * 119.99867 * 33.19527 * 14 13 12 16 16 O 1.21586 * 119.99970 * 5.23457 * 15 14 13 17 17 N 1.34785 * 120.00050 * 185.23760 * 15 14 13 18 18 C 1.46285 * 120.17323 * 5.20144 * 17 15 14 19 19 C 1.52498 * 110.91546 * 232.48589 * 18 17 15 20 20 N 1.46759 * 110.63764 * 323.08007 * 19 18 17 21 21 C 1.34777 * 124.64186 * 220.97824 * 20 19 18 22 22 O 1.21280 * 124.82484 * 0.58824 * 21 20 19 23 23 C 1.51179 * 110.35929 * 180.62007 * 21 20 19 24 24 C 1.54606 * 104.14521 * 342.60018 * 23 21 20 25 25 C 1.47098 * 124.56628 * 39.83443 * 20 19 18 26 26 H 1.08997 * 110.79172 * 75.75649 * 25 20 19 27 27 C 1.47023 * 120.17440 * 184.92713 * 17 15 14 28 28 C 1.38871 * 119.86273 * 0.02562 * 13 12 11 29 29 C 1.38108 * 119.92510 * 359.97438 * 28 13 12 30 30 H 0.96997 * 120.00096 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47645 * 59.99532 * 9 7 2 32 32 H 1.09002 * 109.46712 * 299.99639 * 9 7 2 33 33 H 1.07998 * 119.96270 * 0.02562 * 11 10 9 34 34 H 1.07999 * 120.03147 * 180.27485 * 12 11 10 35 35 H 0.97002 * 120.00190 * 213.19889 * 14 13 12 36 36 H 1.09007 * 109.19218 * 352.85359 * 18 17 15 37 37 H 1.08993 * 109.18824 * 112.11709 * 18 17 15 38 38 H 1.08999 * 109.24452 * 83.37956 * 19 18 17 39 39 H 1.09004 * 109.24212 * 202.81716 * 19 18 17 40 40 H 1.08998 * 110.49647 * 223.93256 * 23 21 20 41 41 H 1.09003 * 110.60658 * 101.32272 * 23 21 20 42 42 H 1.08999 * 110.95128 * 266.55234 * 24 23 21 43 43 H 1.08997 * 110.98281 * 142.84338 * 24 23 21 44 44 H 1.08997 * 109.80596 * 240.67602 * 27 17 15 45 45 H 1.08996 * 109.80364 * 1.55573 * 27 17 15 46 46 H 1.08000 * 120.03476 * 179.97438 * 28 13 12 47 47 H 1.08001 * 119.96249 * 180.02562 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6445 0.0005 11 6 2.6788 -4.1689 1.1990 12 6 3.5723 -5.2221 1.2023 13 6 4.0243 -5.7510 0.0006 14 7 4.9301 -6.8177 0.0006 15 6 4.8777 -7.7463 0.9761 16 8 3.9856 -7.7111 1.8015 17 7 5.8141 -8.7137 1.0366 18 6 6.9515 -8.6947 0.1168 19 6 7.0907 -10.0311 -0.6045 20 7 6.7544 -11.1415 0.2943 21 6 7.4278 -12.3073 0.3569 22 8 8.4009 -12.5819 -0.3127 23 6 6.7973 -13.2245 1.3801 24 6 5.9224 -12.2850 2.2415 25 6 5.6504 -11.1235 1.2663 26 1 4.6916 -11.2559 0.7652 27 6 5.7011 -9.7904 2.0314 28 6 3.5766 -5.2184 -1.2012 29 6 2.6831 -4.1652 -1.1978 30 1 -0.4850 0.8400 0.0004 31 1 0.6247 -2.5571 -0.8896 32 1 0.6241 -2.5566 0.8904 33 1 2.3265 -3.7574 2.1333 34 1 3.9187 -5.6341 2.1386 35 1 5.5957 -6.8889 -0.7015 36 1 6.8041 -7.9041 -0.6190 37 1 7.8635 -8.4944 0.6789 38 1 6.4191 -10.0477 -1.4629 39 1 8.1179 -10.1476 -0.9499 40 1 7.5648 -13.6988 1.9918 41 1 6.1805 -13.9785 0.8910 42 1 6.4695 -11.9380 3.1181 43 1 4.9934 -12.7750 2.5329 44 1 6.5671 -9.7742 2.6931 45 1 4.7885 -9.6613 2.6132 46 1 3.9267 -5.6273 -2.1375 47 1 2.3342 -3.7508 -2.1321 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932571766.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:44 Heat of formation + Delta-G solvation = -18.201747 kcal Electronic energy + Delta-G solvation = -29102.493014 eV Core-core repulsion = 25057.479904 eV Total energy + Delta-G solvation = -4045.013110 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.51413 -40.43111 -38.57527 -37.42986 -35.82186 -35.01346 -33.47527 -33.01288 -30.86057 -30.29932 -30.04978 -28.82073 -26.64179 -24.86280 -24.12023 -23.10895 -22.39021 -21.90211 -21.00315 -20.16382 -19.46926 -18.39526 -17.50055 -17.09683 -16.64684 -16.30531 -16.03712 -15.78455 -15.73624 -14.95675 -14.77896 -14.66921 -14.22218 -14.16284 -14.12994 -13.91782 -13.52924 -13.16120 -13.01913 -12.85923 -12.69462 -12.58686 -12.16449 -12.10045 -11.95956 -11.76989 -11.58657 -11.39089 -11.27399 -10.83516 -10.62724 -10.41410 -10.27437 -10.23174 -9.94078 -9.67072 -9.46312 -9.29705 -8.84811 -8.41426 -8.29247 -7.37089 -6.02806 -4.06981 1.89776 2.04068 2.09674 2.12566 2.58357 3.00444 3.32126 3.36403 3.39411 3.48124 3.77428 3.89837 4.05290 4.27157 4.37688 4.41945 4.50515 4.53826 4.57743 4.65845 4.86427 5.02041 5.07800 5.14550 5.18573 5.29376 5.30895 5.33836 5.40805 5.47469 5.55326 5.84925 5.93151 5.97929 6.03331 6.13632 6.19863 6.40273 6.59622 6.65128 6.90674 6.93024 7.17011 7.21486 7.52290 7.65011 7.68607 7.71776 7.87548 7.92747 8.32837 8.34557 8.98086 9.56587 11.06677 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.032060 B = 0.001870 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.157919 B =14968.071986 C =15289.625107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.511 4.511 8 H 0.056 0.944 9 C 0.048 3.952 10 C -0.044 4.044 11 C -0.107 4.107 12 C -0.116 4.116 13 C 0.120 3.880 14 N -0.680 5.680 15 C 0.706 3.294 16 O -0.565 6.565 17 N -0.630 5.630 18 C 0.100 3.900 19 C 0.113 3.887 20 N -0.615 5.615 21 C 0.517 3.483 22 O -0.534 6.534 23 C -0.152 4.152 24 C -0.126 4.126 25 C 0.115 3.885 26 H 0.092 0.908 27 C 0.123 3.877 28 C -0.145 4.145 29 C -0.107 4.107 30 H 0.262 0.738 31 H 0.028 0.972 32 H 0.029 0.971 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.399 0.601 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.113 0.887 46 H 0.113 0.887 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.315 -25.691 2.077 29.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.550 4.550 8 H 0.075 0.925 9 C 0.011 3.989 10 C -0.044 4.044 11 C -0.125 4.125 12 C -0.137 4.137 13 C 0.028 3.972 14 N -0.329 5.329 15 C 0.408 3.592 16 O -0.441 6.441 17 N -0.368 5.368 18 C -0.025 4.025 19 C -0.010 4.010 20 N -0.350 5.350 21 C 0.305 3.695 22 O -0.410 6.410 23 C -0.193 4.193 24 C -0.164 4.164 25 C 0.010 3.990 26 H 0.110 0.890 27 C -0.001 4.001 28 C -0.166 4.166 29 C -0.125 4.125 30 H 0.072 0.928 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.237 0.763 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.117 0.883 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.107 0.893 43 H 0.115 0.885 44 H 0.095 0.905 45 H 0.131 0.869 46 H 0.131 0.869 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 14.068 -25.635 2.280 29.330 hybrid contribution 0.853 0.979 -0.525 1.400 sum 14.921 -24.657 1.756 28.873 Atomic orbital electron populations 1.69947 1.06014 1.26895 1.50445 1.25016 0.94888 0.99229 0.95247 0.86600 0.79526 0.82872 0.78688 1.20205 1.21265 1.20194 1.21026 0.92998 0.89894 1.51034 0.92525 1.18344 0.92573 0.89561 0.98406 1.20714 0.96463 0.95385 0.91859 1.20997 0.97438 0.95554 0.98531 1.20991 0.99520 0.96430 0.96710 1.17296 0.95572 0.89911 0.94446 1.42686 1.36386 1.25316 1.28522 1.15825 0.81864 0.79254 0.82234 1.90961 1.36062 1.75448 1.41595 1.47025 1.24685 1.27583 1.37536 1.21651 0.90102 0.97317 0.93442 1.21634 1.02860 0.84663 0.91811 1.48409 1.31561 1.15846 1.39176 1.21085 0.82494 0.82610 0.83334 1.90737 1.26070 1.77110 1.47081 1.22294 1.01075 0.98310 0.97574 1.22604 1.01567 0.94697 0.97575 1.22344 0.90808 0.96042 0.89795 0.88963 1.22099 1.04741 0.83271 0.89959 1.20688 1.00575 0.99926 0.95363 1.20864 0.97323 0.95776 0.98568 0.92803 0.95325 0.95284 0.86087 0.85777 0.76310 0.89093 0.90543 0.91096 0.88273 0.87728 0.87561 0.89319 0.88467 0.90502 0.86932 0.86929 0.85990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -14.24 9.09 -34.44 -0.31 -14.55 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.05 1.23 5.10 -29.04 -0.15 1.09 16 10 C -0.04 -0.95 5.07 -104.59 -0.53 -1.48 16 11 C -0.11 -2.16 9.69 -39.61 -0.38 -2.54 16 12 C -0.12 -2.12 8.66 -39.40 -0.34 -2.46 16 13 C 0.12 1.94 6.28 -83.69 -0.53 1.41 16 14 N -0.68 -8.31 5.23 -14.22 -0.07 -8.38 16 15 C 0.71 8.99 8.02 -86.91 -0.70 8.30 16 16 O -0.57 -9.36 13.40 5.29 0.07 -9.29 16 17 N -0.63 -5.53 2.92 -178.99 -0.52 -6.06 16 18 C 0.10 0.60 6.52 -4.42 -0.03 0.57 16 19 C 0.11 0.72 6.89 -4.16 -0.03 0.69 16 20 N -0.61 -4.39 3.13 -164.45 -0.51 -4.91 16 21 C 0.52 4.40 8.02 -10.75 -0.09 4.32 16 22 O -0.53 -6.74 17.47 5.56 0.10 -6.64 16 23 C -0.15 -0.69 6.86 -26.80 -0.18 -0.88 16 24 C -0.13 -0.40 6.67 -25.32 -0.17 -0.57 16 25 C 0.11 0.65 3.88 -66.63 -0.26 0.39 16 26 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 27 C 0.12 0.87 5.92 -3.34 -0.02 0.85 16 28 C -0.14 -2.31 9.96 -39.39 -0.39 -2.71 16 29 C -0.11 -2.03 9.69 -39.61 -0.38 -2.41 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.03 0.76 8.09 -51.93 -0.42 0.35 16 32 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 33 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 34 H 0.12 2.25 6.40 -52.49 -0.34 1.92 16 35 H 0.40 3.48 6.25 -40.82 -0.26 3.23 16 36 H 0.09 0.42 5.48 -51.93 -0.28 0.14 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.10 0.63 7.71 -51.93 -0.40 0.23 16 40 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.11 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.22 7.63 -51.93 -0.40 -0.18 16 43 H 0.10 0.17 8.14 -51.93 -0.42 -0.26 16 44 H 0.08 0.46 7.82 -51.93 -0.41 0.05 16 45 H 0.11 0.92 6.97 -51.93 -0.36 0.56 16 46 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 47 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 381.57 15.07 5.75 5.75 Total: -1.00 -35.73 381.57 -10.69 -46.42 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -6.63 Total: 0.77 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -4.59 Total: -8.47 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: -0.37 Total: -44.97 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: 0.17 Total: -15.93 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.73 -10.69 -46.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932571766.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.218 kcal (2) G-P(sol) polarization free energy of solvation -35.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds