Wall clock time and date at job start Wed Apr 1 2020 02:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99769 * 2 1 4 4 H 1.48498 * 109.47516 * 239.99836 * 3 2 1 5 5 H 1.48496 * 109.47397 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47121 * 119.99834 * 3 2 1 7 7 C 1.37872 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99934 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00070 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47333 * 179.97438 * 9 7 2 11 11 C 1.38288 * 119.93153 * 89.99549 * 10 9 7 12 12 C 1.38114 * 120.06963 * 179.74921 * 11 10 9 13 13 C 1.38857 * 119.93054 * 0.25313 * 12 11 10 14 14 N 1.39943 * 120.07006 * 179.97438 * 13 12 11 15 15 C 1.34778 * 119.99867 * 33.19527 * 14 13 12 16 16 O 1.21586 * 119.99970 * 5.23457 * 15 14 13 17 17 N 1.34785 * 120.00050 * 185.23760 * 15 14 13 18 18 C 1.46285 * 120.17323 * 5.20144 * 17 15 14 19 19 C 1.52498 * 110.91546 * 232.48589 * 18 17 15 20 20 N 1.46759 * 110.63764 * 323.08007 * 19 18 17 21 21 C 1.34777 * 124.64186 * 220.97824 * 20 19 18 22 22 O 1.21280 * 124.82484 * 0.58824 * 21 20 19 23 23 C 1.51179 * 110.35929 * 180.62007 * 21 20 19 24 24 C 1.54606 * 104.14521 * 342.60018 * 23 21 20 25 25 C 1.47098 * 124.56628 * 39.83443 * 20 19 18 26 26 H 1.08997 * 110.79172 * 75.75649 * 25 20 19 27 27 C 1.47023 * 120.17440 * 184.92713 * 17 15 14 28 28 C 1.38871 * 119.86273 * 0.02562 * 13 12 11 29 29 C 1.38108 * 119.92510 * 359.97438 * 28 13 12 30 30 H 0.96997 * 120.00096 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47645 * 59.99532 * 9 7 2 32 32 H 1.09002 * 109.46712 * 299.99639 * 9 7 2 33 33 H 1.07998 * 119.96270 * 0.02562 * 11 10 9 34 34 H 1.07999 * 120.03147 * 180.27485 * 12 11 10 35 35 H 0.97002 * 120.00190 * 213.19889 * 14 13 12 36 36 H 1.09007 * 109.19218 * 352.85359 * 18 17 15 37 37 H 1.08993 * 109.18824 * 112.11709 * 18 17 15 38 38 H 1.08999 * 109.24452 * 83.37956 * 19 18 17 39 39 H 1.09004 * 109.24212 * 202.81716 * 19 18 17 40 40 H 1.08998 * 110.49647 * 223.93256 * 23 21 20 41 41 H 1.09003 * 110.60658 * 101.32272 * 23 21 20 42 42 H 1.08999 * 110.95128 * 266.55234 * 24 23 21 43 43 H 1.08997 * 110.98281 * 142.84338 * 24 23 21 44 44 H 1.08997 * 109.80596 * 240.67602 * 27 17 15 45 45 H 1.08996 * 109.80364 * 1.55573 * 27 17 15 46 46 H 1.08000 * 120.03476 * 179.97438 * 28 13 12 47 47 H 1.08001 * 119.96249 * 180.02562 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6445 0.0005 11 6 2.6788 -4.1689 1.1990 12 6 3.5723 -5.2221 1.2023 13 6 4.0243 -5.7510 0.0006 14 7 4.9301 -6.8177 0.0006 15 6 4.8777 -7.7463 0.9761 16 8 3.9856 -7.7111 1.8015 17 7 5.8141 -8.7137 1.0366 18 6 6.9515 -8.6947 0.1168 19 6 7.0907 -10.0311 -0.6045 20 7 6.7544 -11.1415 0.2943 21 6 7.4278 -12.3073 0.3569 22 8 8.4009 -12.5819 -0.3127 23 6 6.7973 -13.2245 1.3801 24 6 5.9224 -12.2850 2.2415 25 6 5.6504 -11.1235 1.2663 26 1 4.6916 -11.2559 0.7652 27 6 5.7011 -9.7904 2.0314 28 6 3.5766 -5.2184 -1.2012 29 6 2.6831 -4.1652 -1.1978 30 1 -0.4850 0.8400 0.0004 31 1 0.6247 -2.5571 -0.8896 32 1 0.6241 -2.5566 0.8904 33 1 2.3265 -3.7574 2.1333 34 1 3.9187 -5.6341 2.1386 35 1 5.5957 -6.8889 -0.7015 36 1 6.8041 -7.9041 -0.6190 37 1 7.8635 -8.4944 0.6789 38 1 6.4191 -10.0477 -1.4629 39 1 8.1179 -10.1476 -0.9499 40 1 7.5648 -13.6988 1.9918 41 1 6.1805 -13.9785 0.8910 42 1 6.4695 -11.9380 3.1181 43 1 4.9934 -12.7750 2.5329 44 1 6.5671 -9.7742 2.6931 45 1 4.7885 -9.6613 2.6132 46 1 3.9267 -5.6273 -2.1375 47 1 2.3342 -3.7508 -2.1321 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932571766.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:43 Heat of formation + Delta-G solvation = -40.702293 kcal Electronic energy + Delta-G solvation = -29103.468711 eV Core-core repulsion = 25057.479904 eV Total energy + Delta-G solvation = -4045.988807 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.24757 -41.31806 -39.84496 -38.26695 -36.54471 -36.30713 -34.93895 -34.05152 -32.29526 -31.75342 -30.81423 -29.55517 -28.26053 -25.75864 -24.85555 -24.55274 -23.77941 -22.47011 -22.14130 -21.29376 -20.35499 -19.21060 -18.51767 -18.44835 -17.58774 -17.34231 -17.03321 -16.76232 -16.53069 -16.34284 -15.93670 -15.82878 -15.44315 -14.99818 -14.79077 -14.58227 -14.52369 -14.41639 -14.34717 -14.21500 -13.69172 -13.47446 -13.28232 -13.16201 -13.13966 -12.65455 -12.60407 -12.57702 -12.42412 -12.26505 -12.03853 -11.90987 -11.68858 -11.52207 -11.26619 -10.93133 -10.91312 -10.58200 -10.35509 -9.74598 -9.52538 -8.81173 -8.16234 -6.31118 0.49442 0.59449 1.29653 1.40960 1.43811 1.49732 1.51955 1.95990 1.99418 2.41520 2.66894 3.03306 3.12643 3.32678 3.48041 3.58762 3.81547 3.99949 4.01040 4.07710 4.13917 4.16749 4.20200 4.40272 4.43064 4.50950 4.55544 4.63337 4.66990 4.69562 4.74891 4.84599 4.89234 5.08251 5.13928 5.14893 5.23311 5.34754 5.36903 5.43366 5.46201 5.49788 5.63030 5.74745 5.77706 6.04274 6.10876 6.14416 6.27517 6.72792 6.81482 7.07723 7.35933 7.37211 8.91246 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.032060 B = 0.001870 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.157919 B =14968.071986 C =15289.625107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.057 3.943 10 C -0.077 4.077 11 C -0.118 4.118 12 C -0.121 4.121 13 C 0.139 3.861 14 N -0.669 5.669 15 C 0.703 3.297 16 O -0.606 6.606 17 N -0.622 5.622 18 C 0.100 3.900 19 C 0.110 3.890 20 N -0.615 5.615 21 C 0.506 3.494 22 O -0.583 6.583 23 C -0.146 4.146 24 C -0.115 4.115 25 C 0.117 3.883 26 H 0.090 0.910 27 C 0.120 3.880 28 C -0.129 4.129 29 C -0.111 4.111 30 H 0.265 0.735 31 H 0.006 0.994 32 H -0.001 1.001 33 H 0.109 0.891 34 H 0.124 0.876 35 H 0.420 0.580 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.114 0.886 41 H 0.119 0.881 42 H 0.100 0.900 43 H 0.118 0.882 44 H 0.092 0.908 45 H 0.101 0.899 46 H 0.158 0.842 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.588 -27.102 1.630 31.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.565 4.565 8 H 0.074 0.926 9 C 0.020 3.980 10 C -0.078 4.078 11 C -0.137 4.137 12 C -0.142 4.142 13 C 0.044 3.956 14 N -0.320 5.320 15 C 0.405 3.595 16 O -0.485 6.485 17 N -0.358 5.358 18 C -0.024 4.024 19 C -0.012 4.012 20 N -0.349 5.349 21 C 0.297 3.703 22 O -0.464 6.464 23 C -0.186 4.186 24 C -0.153 4.153 25 C 0.013 3.987 26 H 0.108 0.892 27 C -0.003 4.003 28 C -0.149 4.149 29 C -0.130 4.130 30 H 0.074 0.926 31 H 0.025 0.975 32 H 0.017 0.983 33 H 0.128 0.872 34 H 0.142 0.858 35 H 0.261 0.739 36 H 0.127 0.873 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.118 0.882 43 H 0.137 0.863 44 H 0.110 0.890 45 H 0.119 0.881 46 H 0.175 0.825 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 16.380 -27.082 1.824 31.703 hybrid contribution 0.191 1.272 -0.379 1.341 sum 16.571 -25.810 1.444 30.706 Atomic orbital electron populations 1.70079 1.07690 1.27954 1.51352 1.25951 0.95785 1.03160 0.94687 0.85487 0.78265 0.78053 0.79171 1.18996 1.20700 1.19465 1.21360 0.93131 0.91153 1.50826 0.92567 1.18084 0.92898 0.91215 0.95791 1.20396 0.97769 0.95801 0.93791 1.20908 0.98508 0.96638 0.97662 1.20980 0.99397 0.95931 0.97876 1.17330 0.94757 0.89827 0.93657 1.42500 1.36096 1.24149 1.29229 1.15977 0.82031 0.79775 0.81673 1.90946 1.37963 1.76574 1.43046 1.47084 1.24174 1.26711 1.37833 1.21824 0.89340 0.97713 0.93479 1.21689 1.02978 0.84575 0.91979 1.48579 1.31485 1.15747 1.39117 1.21774 0.81855 0.83343 0.83373 1.90707 1.28303 1.78141 1.49200 1.22336 1.01421 0.98022 0.96776 1.22648 1.02454 0.93239 0.96960 1.22399 0.90192 0.96214 0.89872 0.89238 1.22262 1.04866 0.83267 0.89936 1.20969 0.98711 0.98188 0.97081 1.20951 0.97935 0.96618 0.97504 0.92627 0.97541 0.98286 0.87250 0.85818 0.73914 0.87341 0.89405 0.90629 0.88414 0.86725 0.86292 0.88162 0.86332 0.89017 0.88083 0.82471 0.85623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.54 13.29 21.45 0.28 -56.26 16 2 C 0.00 0.12 5.46 84.65 0.46 0.59 16 3 Si 0.97 44.36 29.54 68.60 2.03 46.38 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 7 C -0.53 -30.25 9.09 25.60 0.23 -30.02 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 9 C 0.06 3.11 5.10 29.10 0.15 3.25 16 10 C -0.08 -3.46 5.07 -19.84 -0.10 -3.56 16 11 C -0.12 -4.96 9.69 22.25 0.22 -4.75 16 12 C -0.12 -4.40 8.66 22.39 0.19 -4.20 16 13 C 0.14 4.16 6.28 38.15 0.24 4.40 16 14 N -0.67 -14.30 5.23 -317.18 -1.66 -15.96 16 15 C 0.70 16.39 8.02 179.05 1.44 17.83 16 16 O -0.61 -19.49 13.40 -3.99 -0.05 -19.54 16 17 N -0.62 -9.34 2.92 -838.46 -2.45 -11.78 16 18 C 0.10 0.90 6.52 86.25 0.56 1.47 16 19 C 0.11 1.15 6.89 86.16 0.59 1.74 16 20 N -0.62 -7.52 3.13 -792.57 -2.48 -9.99 16 21 C 0.51 7.86 8.02 87.81 0.70 8.57 16 22 O -0.58 -14.46 17.47 -3.03 -0.05 -14.51 16 23 C -0.15 -0.96 6.86 30.55 0.21 -0.75 16 24 C -0.12 -0.38 6.67 31.51 0.21 -0.17 16 25 C 0.12 1.04 3.88 45.51 0.18 1.21 16 26 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 27 C 0.12 1.42 5.92 86.55 0.51 1.93 16 28 C -0.13 -3.77 9.96 22.39 0.22 -3.54 16 29 C -0.11 -4.18 9.69 22.25 0.22 -3.96 16 30 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 31 H 0.01 0.36 8.09 -2.39 -0.02 0.34 16 32 H 0.00 -0.07 8.08 -2.39 -0.02 -0.09 16 33 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 34 H 0.12 4.49 6.40 -2.91 -0.02 4.47 16 35 H 0.42 5.55 6.25 -92.71 -0.58 4.97 16 36 H 0.11 0.58 5.48 -2.38 -0.01 0.57 16 37 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.10 1.09 7.71 -2.38 -0.02 1.07 16 40 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.10 0.15 7.63 -2.39 -0.02 0.13 16 43 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 44 H 0.09 0.84 7.82 -2.39 -0.02 0.82 16 45 H 0.10 1.51 6.97 -2.39 -0.02 1.49 16 46 H 0.16 3.20 8.06 -2.91 -0.02 3.17 16 47 H 0.13 4.54 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -81.19 381.57 2.27 -78.92 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.42 Total: 12.71 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 6.24 Total: -9.97 kcal Atomic # 7 Polarization: -87.69 SS G_CDS: -6.30 Total: -93.99 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -0.11 Total: -34.05 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -81.19 2.27 -78.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932571766.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.217 kcal (2) G-P(sol) polarization free energy of solvation -81.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds