Wall clock time and date at job start Wed Apr 1 2020 01:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00183 * 2 1 4 4 H 1.48499 * 109.47177 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46832 * 299.99911 * 3 2 1 6 6 H 1.48498 * 109.47372 * 59.99710 * 3 2 1 7 7 C 1.38815 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99690 * 170.56951 * 7 2 1 9 9 N 1.36936 * 119.99931 * 350.57667 * 7 2 1 10 10 C 1.48145 * 127.83477 * 164.35535 * 9 7 2 11 11 C 1.57747 * 104.61472 * 139.75870 * 10 9 7 12 12 H 1.09004 * 120.32632 * 244.67251 * 11 10 9 13 13 C 1.54146 * 103.42978 * 24.77647 * 11 10 9 14 14 H 1.08998 * 121.78564 * 220.64359 * 13 11 10 15 15 C 1.48143 * 127.83912 * 344.34675 * 9 7 2 16 16 C 1.53001 * 116.08212 * 87.40613 * 11 10 9 17 17 H 1.09001 * 117.44402 * 16.82967 * 16 11 10 18 18 N 1.46494 * 117.44235 * 161.57690 * 16 11 10 19 19 C 1.34779 * 119.99935 * 223.99583 * 18 16 11 20 20 O 1.21552 * 119.99823 * 0.02562 * 19 18 16 21 21 C 1.47848 * 119.99736 * 179.97438 * 19 18 16 22 22 C 1.39577 * 120.13963 * 180.02562 * 21 19 18 23 23 C 1.37963 * 119.84810 * 180.02562 * 22 21 19 24 24 C 1.38349 * 120.14731 * 359.97438 * 23 22 21 25 25 C 1.50708 * 119.85303 * 179.71944 * 24 23 22 26 26 C 1.53003 * 109.46867 * 90.00450 * 25 24 23 27 27 C 1.50699 * 109.47225 * 179.97438 * 26 25 24 28 28 N 1.34773 * 120.00144 * 179.97438 * 27 26 25 29 29 O 1.21280 * 119.99460 * 0.02562 * 27 26 25 30 30 C 1.38363 * 120.29416 * 0.02562 * 24 23 22 31 31 C 1.37954 * 120.14499 * 359.97438 * 30 24 23 32 32 H 0.97002 * 119.99751 * 0.02562 * 1 2 3 33 33 H 1.09005 * 110.40921 * 259.19196 * 10 9 7 34 34 H 1.09002 * 110.41377 * 21.62715 * 10 9 7 35 35 H 1.09004 * 110.40467 * 100.80632 * 15 9 7 36 36 H 1.08997 * 110.50942 * 338.42615 * 15 9 7 37 37 H 0.96999 * 120.00430 * 43.99970 * 18 16 11 38 38 H 1.07998 * 120.07557 * 0.05105 * 22 21 19 39 39 H 1.08009 * 119.92197 * 180.02562 * 23 22 21 40 40 H 1.09000 * 109.47357 * 210.00072 * 25 24 23 41 41 H 1.09001 * 109.47137 * 330.00492 * 25 24 23 42 42 H 1.09000 * 109.46823 * 299.99949 * 26 25 24 43 43 H 1.09009 * 109.46906 * 59.99940 * 26 25 24 44 44 H 0.96996 * 119.99846 * 0.02562 * 28 27 26 45 45 H 0.97002 * 119.99722 * 180.02562 * 28 27 26 46 46 H 1.08000 * 119.92529 * 179.97438 * 30 24 23 47 47 H 1.08000 * 120.07619 * 180.02562 * 31 30 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0793 -1.2086 -0.1527 9 7 1.3393 -2.3800 0.1952 10 6 1.8185 -3.7547 -0.0788 11 6 1.2951 -4.6090 1.1397 12 1 1.9999 -5.0705 1.8314 13 6 0.0730 -3.8119 1.6370 14 1 -0.1327 -3.6797 2.6992 15 6 -0.0301 -2.5685 0.7278 16 6 -0.1133 -5.1898 0.9985 17 1 -0.5439 -5.2256 -0.0023 18 7 -0.4776 -6.2998 1.8823 19 6 -1.1346 -7.3675 1.3874 20 8 -1.4244 -7.4096 0.2077 21 6 -1.5017 -8.4881 2.2793 22 6 -2.1816 -9.5955 1.7699 23 6 -2.5217 -10.6375 2.6077 24 6 -2.1899 -10.5867 3.9498 25 6 -2.5703 -11.7258 4.8603 26 6 -1.4424 -12.7594 4.8824 27 6 -1.8224 -13.8982 5.7933 28 7 -0.9759 -14.9322 5.9687 29 8 -2.8904 -13.8846 6.3679 30 6 -1.5160 -9.4918 4.4612 31 6 -1.1699 -8.4431 3.6344 32 1 -0.4850 0.8401 -0.0004 33 1 1.4047 -4.1213 -1.0183 34 1 2.9079 -3.7791 -0.1071 35 1 -0.7327 -2.7497 -0.0857 36 1 -0.3376 -1.6982 1.3076 37 1 -0.2461 -6.2664 2.8236 38 1 -2.4405 -9.6368 0.7222 39 1 -3.0475 -11.4952 2.2147 40 1 -2.7345 -11.3458 5.8686 41 1 -3.4846 -12.1934 4.4948 42 1 -1.2782 -13.1395 3.8741 43 1 -0.5281 -12.2918 5.2479 44 1 -0.1220 -14.9432 5.5088 45 1 -1.2208 -15.6654 6.5547 46 1 -1.2602 -9.4581 5.5099 47 1 -0.6435 -7.5892 4.0346 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961733389.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:42 Heat of formation + Delta-G solvation = 3.171927 kcal Electronic energy + Delta-G solvation = -27800.224263 eV Core-core repulsion = 23756.137985 eV Total energy + Delta-G solvation = -4044.086278 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.49764 -39.96787 -39.02427 -38.00032 -34.59919 -34.39624 -34.14466 -32.71635 -31.25401 -30.61370 -29.84264 -27.03080 -26.11844 -25.35077 -23.03047 -22.83549 -21.54704 -20.85008 -20.47848 -20.16611 -19.31417 -17.99291 -17.86981 -17.27478 -16.86621 -16.57088 -16.03343 -15.49877 -15.29637 -14.94530 -14.85681 -14.68288 -14.38439 -13.90645 -13.80041 -13.54886 -13.40532 -13.23172 -13.20675 -12.74652 -12.26481 -12.24549 -11.80111 -11.74782 -11.52240 -11.48976 -11.23751 -10.99169 -10.85840 -10.52039 -10.37031 -10.24063 -10.22468 -10.14530 -9.92047 -9.74563 -9.31084 -9.23639 -9.09362 -8.75164 -8.32903 -6.88376 -5.81222 -3.15473 0.55817 1.05905 2.12020 2.68493 3.01846 3.07282 3.37308 3.43217 3.45793 3.61189 4.17801 4.33231 4.37011 4.43013 4.45637 4.58044 4.60030 4.66874 4.81718 5.01319 5.04876 5.08576 5.15511 5.35033 5.38746 5.40809 5.48160 5.56895 5.66500 5.69582 5.72277 5.84574 5.96729 6.05619 6.14870 6.19942 6.21813 6.22891 6.50097 6.55642 6.67633 6.75855 6.79343 6.87500 7.33577 7.51884 7.54493 7.70502 7.72319 8.18724 8.23000 9.09447 9.72267 10.49213 11.33304 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.031929 B = 0.001542 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.746027 B =18156.449296 C =18381.239284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.158 3.842 11 C -0.185 4.185 12 H 0.106 0.894 13 C -0.179 4.179 14 H 0.101 0.899 15 C 0.186 3.814 16 C 0.093 3.907 17 H 0.133 0.867 18 N -0.692 5.692 19 C 0.558 3.442 20 O -0.535 6.535 21 C -0.131 4.131 22 C -0.057 4.057 23 C -0.124 4.124 24 C -0.064 4.064 25 C -0.068 4.068 26 C -0.138 4.138 27 C 0.516 3.484 28 N -0.859 5.859 29 O -0.543 6.543 30 C -0.123 4.123 31 C -0.084 4.084 32 H 0.254 0.746 33 H 0.031 0.969 34 H 0.050 0.950 35 H 0.027 0.973 36 H 0.091 0.909 37 H 0.397 0.603 38 H 0.137 0.863 39 H 0.129 0.871 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.402 0.598 45 H 0.401 0.599 46 H 0.128 0.872 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.494 -28.656 12.367 31.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.316 5.316 10 C 0.031 3.969 11 C -0.206 4.206 12 H 0.124 0.876 13 C -0.201 4.201 14 H 0.119 0.881 15 C 0.060 3.940 16 C -0.013 4.013 17 H 0.151 0.849 18 N -0.341 5.341 19 C 0.345 3.655 20 O -0.412 6.412 21 C -0.134 4.134 22 C -0.076 4.076 23 C -0.142 4.142 24 C -0.064 4.064 25 C -0.106 4.106 26 C -0.178 4.178 27 C 0.301 3.699 28 N -0.422 5.422 29 O -0.420 6.420 30 C -0.141 4.141 31 C -0.102 4.102 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.045 0.955 36 H 0.109 0.891 37 H 0.232 0.768 38 H 0.155 0.845 39 H 0.147 0.853 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.231 0.769 45 H 0.232 0.768 46 H 0.146 0.854 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.443 -28.186 11.755 30.637 hybrid contribution 0.984 0.527 0.687 1.310 sum -1.460 -27.659 12.442 30.364 Atomic orbital electron populations 1.69912 1.05070 1.25370 1.55680 1.24907 0.95639 0.98009 1.01693 0.86039 0.78876 0.83497 0.77287 1.20347 1.21652 1.21629 1.19036 0.90910 0.82279 1.43320 0.90450 1.45128 1.13705 0.99982 1.72799 1.21710 0.97197 0.85651 0.92377 1.25092 0.90364 1.02150 1.03013 0.87560 1.24620 1.02413 0.92478 1.00552 0.88101 1.21058 0.87017 0.92406 0.93566 1.21919 0.98586 0.85101 0.95674 0.84950 1.45322 1.57796 1.18676 1.12303 1.18243 0.77742 0.81952 0.87554 1.90779 1.54233 1.79768 1.16462 1.20018 1.03227 0.96204 0.93936 1.21302 0.94102 0.91478 1.00689 1.21048 1.01190 0.99052 0.92899 1.20048 0.96687 0.95443 0.94232 1.20384 0.97785 0.92673 0.99744 1.21679 1.01007 0.94675 1.00417 1.20761 0.83871 0.83531 0.81714 1.43929 1.22297 1.24361 1.51618 1.90772 1.23308 1.79049 1.48877 1.20983 0.99583 0.93527 1.00012 1.21326 0.97956 0.98469 0.92480 0.93556 0.95107 0.93108 0.95539 0.89120 0.76768 0.84470 0.85308 0.89842 0.89831 0.88361 0.88383 0.76923 0.76841 0.85377 0.85526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.73 10.88 55.49 0.60 -26.12 16 2 C -0.01 -0.15 5.40 -17.43 -0.09 -0.24 16 3 Si 0.91 21.81 29.56 -169.99 -5.03 16.79 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.23 -6.31 10.35 -15.06 -0.16 -6.46 16 8 H 0.08 2.07 7.85 -52.48 -0.41 1.66 16 9 N -0.59 -15.17 3.38 -166.69 -0.56 -15.73 16 10 C 0.16 3.33 7.10 -0.54 0.00 3.32 16 11 C -0.18 -3.26 7.34 -87.42 -0.64 -3.90 16 12 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 13 C -0.18 -3.36 6.97 -89.29 -0.62 -3.98 16 14 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 15 C 0.19 4.46 5.69 -2.41 -0.01 4.44 16 16 C 0.09 1.58 5.93 -67.93 -0.40 1.17 16 17 H 0.13 2.56 7.40 -51.93 -0.38 2.18 16 18 N -0.69 -9.47 5.51 -54.75 -0.30 -9.77 16 19 C 0.56 8.15 7.77 -12.33 -0.10 8.05 16 20 O -0.53 -9.85 15.91 5.32 0.08 -9.76 16 21 C -0.13 -1.47 5.87 -104.97 -0.62 -2.09 16 22 C -0.06 -0.58 9.60 -39.18 -0.38 -0.96 16 23 C -0.12 -0.97 9.68 -39.64 -0.38 -1.35 16 24 C -0.06 -0.45 5.14 -104.53 -0.54 -0.99 16 25 C -0.07 -0.41 4.63 -27.88 -0.13 -0.54 16 26 C -0.14 -0.57 5.68 -27.88 -0.16 -0.72 16 27 C 0.52 3.14 8.10 -10.99 -0.09 3.05 16 28 N -0.86 -2.29 8.87 31.22 0.28 -2.01 16 29 O -0.54 -5.84 16.82 5.56 0.09 -5.75 16 30 C -0.12 -0.89 9.68 -39.64 -0.38 -1.27 16 31 C -0.08 -0.72 9.54 -39.19 -0.37 -1.10 16 32 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 2.41 6.53 -51.93 -0.34 2.08 16 37 H 0.40 4.23 6.86 -40.82 -0.28 3.95 16 38 H 0.14 1.45 7.65 -52.49 -0.40 1.05 16 39 H 0.13 0.75 8.06 -52.48 -0.42 0.32 16 40 H 0.08 0.55 8.04 -51.93 -0.42 0.13 16 41 H 0.08 0.55 8.04 -51.93 -0.42 0.14 16 42 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 43 H 0.10 0.27 8.14 -51.92 -0.42 -0.15 16 44 H 0.40 -0.08 8.83 -40.82 -0.36 -0.44 16 45 H 0.40 0.89 8.93 -40.82 -0.36 0.52 16 46 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 47 H 0.13 0.86 6.41 -52.49 -0.34 0.53 16 LS Contribution 394.69 15.07 5.95 5.95 Total: -1.00 -36.01 394.69 -10.61 -46.62 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -6.65 Total: 3.35 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -5.08 Total: -3.56 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: 0.02 Total: -53.64 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: 0.18 Total: -15.51 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.01 -10.61 -46.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961733389.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.794 kcal (2) G-P(sol) polarization free energy of solvation -36.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds