Wall clock time and date at job start Wed Apr 1 2020 01:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00183 * 2 1 4 4 H 1.48499 * 109.47177 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46832 * 299.99911 * 3 2 1 6 6 H 1.48498 * 109.47372 * 59.99710 * 3 2 1 7 7 C 1.38815 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99690 * 170.56951 * 7 2 1 9 9 N 1.36936 * 119.99931 * 350.57667 * 7 2 1 10 10 C 1.48145 * 127.83477 * 164.35535 * 9 7 2 11 11 C 1.57747 * 104.61472 * 139.75870 * 10 9 7 12 12 H 1.09004 * 120.32632 * 244.67251 * 11 10 9 13 13 C 1.54146 * 103.42978 * 24.77647 * 11 10 9 14 14 H 1.08998 * 121.78564 * 220.64359 * 13 11 10 15 15 C 1.48143 * 127.83912 * 344.34675 * 9 7 2 16 16 C 1.53001 * 116.08212 * 87.40613 * 11 10 9 17 17 H 1.09001 * 117.44402 * 16.82967 * 16 11 10 18 18 N 1.46494 * 117.44235 * 161.57690 * 16 11 10 19 19 C 1.34779 * 119.99935 * 223.99583 * 18 16 11 20 20 O 1.21552 * 119.99823 * 0.02562 * 19 18 16 21 21 C 1.47848 * 119.99736 * 179.97438 * 19 18 16 22 22 C 1.39577 * 120.13963 * 180.02562 * 21 19 18 23 23 C 1.37963 * 119.84810 * 180.02562 * 22 21 19 24 24 C 1.38349 * 120.14731 * 359.97438 * 23 22 21 25 25 C 1.50708 * 119.85303 * 179.71944 * 24 23 22 26 26 C 1.53003 * 109.46867 * 90.00450 * 25 24 23 27 27 C 1.50699 * 109.47225 * 179.97438 * 26 25 24 28 28 N 1.34773 * 120.00144 * 179.97438 * 27 26 25 29 29 O 1.21280 * 119.99460 * 0.02562 * 27 26 25 30 30 C 1.38363 * 120.29416 * 0.02562 * 24 23 22 31 31 C 1.37954 * 120.14499 * 359.97438 * 30 24 23 32 32 H 0.97002 * 119.99751 * 0.02562 * 1 2 3 33 33 H 1.09005 * 110.40921 * 259.19196 * 10 9 7 34 34 H 1.09002 * 110.41377 * 21.62715 * 10 9 7 35 35 H 1.09004 * 110.40467 * 100.80632 * 15 9 7 36 36 H 1.08997 * 110.50942 * 338.42615 * 15 9 7 37 37 H 0.96999 * 120.00430 * 43.99970 * 18 16 11 38 38 H 1.07998 * 120.07557 * 0.05105 * 22 21 19 39 39 H 1.08009 * 119.92197 * 180.02562 * 23 22 21 40 40 H 1.09000 * 109.47357 * 210.00072 * 25 24 23 41 41 H 1.09001 * 109.47137 * 330.00492 * 25 24 23 42 42 H 1.09000 * 109.46823 * 299.99949 * 26 25 24 43 43 H 1.09009 * 109.46906 * 59.99940 * 26 25 24 44 44 H 0.96996 * 119.99846 * 0.02562 * 28 27 26 45 45 H 0.97002 * 119.99722 * 180.02562 * 28 27 26 46 46 H 1.08000 * 119.92529 * 179.97438 * 30 24 23 47 47 H 1.08000 * 120.07619 * 180.02562 * 31 30 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0793 -1.2086 -0.1527 9 7 1.3393 -2.3800 0.1952 10 6 1.8185 -3.7547 -0.0788 11 6 1.2951 -4.6090 1.1397 12 1 1.9999 -5.0705 1.8314 13 6 0.0730 -3.8119 1.6370 14 1 -0.1327 -3.6797 2.6992 15 6 -0.0301 -2.5685 0.7278 16 6 -0.1133 -5.1898 0.9985 17 1 -0.5439 -5.2256 -0.0023 18 7 -0.4776 -6.2998 1.8823 19 6 -1.1346 -7.3675 1.3874 20 8 -1.4244 -7.4096 0.2077 21 6 -1.5017 -8.4881 2.2793 22 6 -2.1816 -9.5955 1.7699 23 6 -2.5217 -10.6375 2.6077 24 6 -2.1899 -10.5867 3.9498 25 6 -2.5703 -11.7258 4.8603 26 6 -1.4424 -12.7594 4.8824 27 6 -1.8224 -13.8982 5.7933 28 7 -0.9759 -14.9322 5.9687 29 8 -2.8904 -13.8846 6.3679 30 6 -1.5160 -9.4918 4.4612 31 6 -1.1699 -8.4431 3.6344 32 1 -0.4850 0.8401 -0.0004 33 1 1.4047 -4.1213 -1.0183 34 1 2.9079 -3.7791 -0.1071 35 1 -0.7327 -2.7497 -0.0857 36 1 -0.3376 -1.6982 1.3076 37 1 -0.2461 -6.2664 2.8236 38 1 -2.4405 -9.6368 0.7222 39 1 -3.0475 -11.4952 2.2147 40 1 -2.7345 -11.3458 5.8686 41 1 -3.4846 -12.1934 4.4948 42 1 -1.2782 -13.1395 3.8741 43 1 -0.5281 -12.2918 5.2479 44 1 -0.1220 -14.9432 5.5088 45 1 -1.2208 -15.6654 6.5547 46 1 -1.2602 -9.4581 5.5099 47 1 -0.6435 -7.5892 4.0346 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961733389.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:41 Heat of formation + Delta-G solvation = -22.664787 kcal Electronic energy + Delta-G solvation = -27801.344627 eV Core-core repulsion = 23756.137985 eV Total energy + Delta-G solvation = -4045.206642 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.45293 -40.61454 -40.13174 -39.20235 -36.14629 -35.09509 -34.57508 -34.26759 -32.33996 -31.78107 -30.72491 -28.80656 -27.67939 -26.36191 -24.04143 -23.57844 -22.83220 -22.00644 -21.43618 -21.06174 -20.89792 -19.02295 -18.77600 -18.19015 -17.77990 -17.69834 -16.81086 -16.58684 -16.28104 -16.06536 -16.00043 -15.67256 -15.48535 -15.03701 -14.88007 -14.64287 -14.53219 -14.33212 -13.90431 -13.83971 -13.74457 -13.34042 -13.23819 -12.87301 -12.78205 -12.73826 -12.42940 -12.22644 -12.09090 -11.98038 -11.89416 -11.76498 -11.69796 -11.15053 -11.02656 -10.86667 -10.71968 -10.59645 -9.94297 -9.90189 -9.59976 -8.93563 -7.92563 -5.29543 -0.19112 0.43201 1.47534 1.47995 1.59467 1.70499 1.73610 1.90298 2.48345 2.65089 2.79507 2.96729 3.28086 3.53592 3.63504 3.79808 3.83569 3.85377 3.93570 4.02045 4.05830 4.06560 4.21056 4.29515 4.40196 4.45640 4.49588 4.53121 4.73372 4.79932 4.86514 4.87128 4.94250 4.97621 5.11116 5.23265 5.26211 5.32002 5.37703 5.42192 5.44863 5.52209 5.61576 5.63637 5.92486 5.95860 6.15465 6.46847 6.52197 6.99373 7.13537 7.40866 7.66357 8.44880 9.21746 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.031929 B = 0.001542 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.746027 B =18156.449296 C =18381.239284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.063 4.063 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.293 1.293 6 H -0.289 1.289 7 C -0.241 4.241 8 H 0.084 0.916 9 N -0.617 5.617 10 C 0.149 3.851 11 C -0.162 4.162 12 H 0.143 0.857 13 C -0.179 4.179 14 H 0.127 0.873 15 C 0.189 3.811 16 C 0.111 3.889 17 H 0.104 0.896 18 N -0.678 5.678 19 C 0.556 3.444 20 O -0.583 6.583 21 C -0.153 4.153 22 C -0.071 4.071 23 C -0.122 4.122 24 C -0.051 4.051 25 C -0.066 4.066 26 C -0.131 4.131 27 C 0.512 3.488 28 N -0.842 5.842 29 O -0.598 6.598 30 C -0.120 4.120 31 C -0.078 4.078 32 H 0.250 0.750 33 H 0.021 0.979 34 H 0.064 0.936 35 H -0.006 1.006 36 H 0.059 0.941 37 H 0.416 0.584 38 H 0.122 0.878 39 H 0.147 0.853 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.418 0.582 45 H 0.404 0.596 46 H 0.156 0.844 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.412 -30.646 14.829 34.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.256 4.256 3 Si 0.810 3.190 4 H -0.187 1.187 5 H -0.220 1.220 6 H -0.216 1.216 7 C -0.369 4.369 8 H 0.102 0.898 9 N -0.340 5.340 10 C 0.023 3.977 11 C -0.183 4.183 12 H 0.161 0.839 13 C -0.200 4.200 14 H 0.145 0.855 15 C 0.063 3.937 16 C 0.003 3.997 17 H 0.122 0.878 18 N -0.328 5.328 19 C 0.346 3.654 20 O -0.464 6.464 21 C -0.156 4.156 22 C -0.090 4.090 23 C -0.140 4.140 24 C -0.051 4.051 25 C -0.103 4.103 26 C -0.171 4.171 27 C 0.299 3.701 28 N -0.405 5.405 29 O -0.479 6.479 30 C -0.137 4.137 31 C -0.097 4.097 32 H 0.059 0.941 33 H 0.039 0.961 34 H 0.082 0.918 35 H 0.012 0.988 36 H 0.077 0.923 37 H 0.255 0.745 38 H 0.140 0.860 39 H 0.165 0.835 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.134 0.866 43 H 0.138 0.862 44 H 0.250 0.750 45 H 0.235 0.765 46 H 0.174 0.826 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.467 -30.237 14.243 33.427 hybrid contribution 0.368 0.994 -0.103 1.065 sum -0.099 -29.243 14.140 32.483 Atomic orbital electron populations 1.70114 1.06651 1.25753 1.57121 1.25777 0.96475 1.01411 1.01968 0.84964 0.78354 0.78965 0.76719 1.18667 1.22047 1.21620 1.19445 0.91500 0.83421 1.42551 0.89805 1.45423 1.14106 1.01143 1.73363 1.21848 0.98032 0.84273 0.93585 1.25009 0.90717 1.01113 1.01422 0.83893 1.24300 1.04059 0.90926 1.00693 0.85495 1.20785 0.86106 0.93741 0.93043 1.21436 0.98026 0.85254 0.94938 0.87845 1.45085 1.57509 1.17390 1.12779 1.18836 0.76632 0.82515 0.87400 1.90755 1.56139 1.80773 1.18767 1.19811 1.05664 0.95455 0.94670 1.21316 0.94861 0.92284 1.00555 1.21215 1.00893 0.98849 0.93069 1.20219 0.95367 0.95651 0.93864 1.20345 0.98285 0.92678 0.99041 1.21670 1.00854 0.93570 1.01014 1.21114 0.83319 0.84362 0.81334 1.43830 1.22410 1.23422 1.50875 1.90755 1.25655 1.80300 1.51226 1.21300 0.98628 0.92668 1.01142 1.21529 0.97433 0.99544 0.91168 0.94089 0.96144 0.91776 0.98786 0.92260 0.74490 0.85957 0.83487 0.90200 0.90664 0.86611 0.86241 0.75019 0.76475 0.82620 0.83487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.48 10.88 21.65 0.24 -57.25 16 2 C -0.06 -3.56 5.40 84.86 0.46 -3.11 16 3 Si 0.98 45.37 29.56 68.60 2.03 47.40 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 7 C -0.24 -13.50 10.35 84.03 0.87 -12.63 16 8 H 0.08 4.47 7.85 -2.91 -0.02 4.45 16 9 N -0.62 -32.13 3.38 -681.30 -2.30 -34.44 16 10 C 0.15 6.24 7.10 87.75 0.62 6.87 16 11 C -0.16 -5.39 7.34 -8.72 -0.06 -5.46 16 12 H 0.14 3.82 8.14 -2.38 -0.02 3.80 16 13 C -0.18 -6.57 6.97 -9.93 -0.07 -6.64 16 14 H 0.13 4.03 8.14 -2.39 -0.02 4.01 16 15 C 0.19 9.44 5.69 86.53 0.49 9.94 16 16 C 0.11 3.69 5.93 44.99 0.27 3.96 16 17 H 0.10 4.16 7.40 -2.39 -0.02 4.15 16 18 N -0.68 -17.39 5.51 -445.41 -2.46 -19.85 16 19 C 0.56 16.01 7.77 86.79 0.67 16.69 16 20 O -0.58 -22.20 15.91 -3.88 -0.06 -22.26 16 21 C -0.15 -3.24 5.87 -20.09 -0.12 -3.36 16 22 C -0.07 -1.41 9.60 22.53 0.22 -1.19 16 23 C -0.12 -1.67 9.68 22.23 0.22 -1.46 16 24 C -0.05 -0.56 5.14 -19.81 -0.10 -0.67 16 25 C -0.07 -0.61 4.63 29.85 0.14 -0.48 16 26 C -0.13 -0.65 5.68 29.85 0.17 -0.48 16 27 C 0.51 5.16 8.10 87.66 0.71 5.87 16 28 N -0.84 -2.42 8.87 -173.54 -1.54 -3.96 16 29 O -0.60 -12.34 16.82 -3.03 -0.05 -12.39 16 30 C -0.12 -1.27 9.68 22.23 0.22 -1.05 16 31 C -0.08 -1.10 9.54 22.53 0.21 -0.89 16 32 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 33 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 35 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 36 H 0.06 3.30 6.53 -2.39 -0.02 3.29 16 37 H 0.42 7.48 6.86 -92.71 -0.64 6.84 16 38 H 0.12 2.71 7.65 -2.91 -0.02 2.69 16 39 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 40 H 0.08 0.85 8.04 -2.39 -0.02 0.83 16 41 H 0.07 0.86 8.04 -2.39 -0.02 0.84 16 42 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 43 H 0.12 0.12 8.14 -2.38 -0.02 0.10 16 44 H 0.42 -1.49 8.83 -92.71 -0.82 -2.30 16 45 H 0.40 1.01 8.93 -92.71 -0.83 0.18 16 46 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 47 H 0.15 1.39 6.41 -2.91 -0.02 1.37 16 Total: -1.00 -82.93 394.69 -0.49 -83.42 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -1.25 Total: 13.43 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 4.91 Total: 5.91 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -6.06 Total: -115.50 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -0.11 Total: -34.66 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -82.93 -0.49 -83.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961733389.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.751 kcal (2) G-P(sol) polarization free energy of solvation -82.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds