Wall clock time and date at job start Wed Apr 1 2020 02:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99570 * 2 1 4 4 H 1.48498 * 109.47353 * 240.00102 * 3 2 1 5 5 H 1.48493 * 109.47164 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46791 * 120.00310 * 3 2 1 7 7 C 1.38810 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99482 * 154.75454 * 7 2 1 9 9 N 1.36928 * 120.00169 * 334.75435 * 7 2 1 10 10 C 1.46898 * 120.69173 * 327.78091 * 9 7 2 11 11 C 1.52668 * 109.34751 * 235.30929 * 10 9 7 12 12 C 1.53192 * 109.42728 * 303.76882 * 11 10 9 13 13 C 1.52628 * 109.35371 * 58.92578 * 12 11 10 14 14 C 1.53464 * 113.68406 * 74.05642 * 13 12 11 15 15 N 1.47677 * 85.96605 * 91.17606 * 14 13 12 16 16 C 1.34779 * 134.45205 * 204.28305 * 15 14 13 17 17 O 1.21549 * 119.99617 * 174.39362 * 16 15 14 18 18 C 1.47856 * 120.00226 * 354.40160 * 16 15 14 19 19 C 1.39702 * 120.07511 * 355.12220 * 18 16 15 20 20 C 1.38056 * 120.14586 * 179.72028 * 19 18 16 21 21 C 1.38100 * 120.29828 * 0.55552 * 20 19 18 22 22 C 1.39671 * 120.13914 * 359.72369 * 21 20 19 23 23 C 1.47860 * 120.06928 * 180.02562 * 22 21 20 24 24 N 1.34774 * 120.00451 * 359.97438 * 23 22 21 25 25 O 1.21559 * 119.99850 * 179.97438 * 23 22 21 26 26 C 1.39298 * 120.07340 * 175.39629 * 18 16 15 27 27 C 1.47678 * 91.08986 * 24.28692 * 15 14 13 28 28 C 1.47116 * 120.69070 * 148.05528 * 9 7 2 29 29 H 0.97004 * 119.99301 * 174.11525 * 1 2 3 30 30 H 1.08995 * 109.53366 * 355.23445 * 10 9 7 31 31 H 1.08998 * 109.53754 * 115.47061 * 10 9 7 32 32 H 1.08994 * 109.56531 * 183.71258 * 11 10 9 33 33 H 1.09006 * 109.34405 * 63.68781 * 11 10 9 34 34 H 1.08989 * 109.48888 * 298.96334 * 12 11 10 35 35 H 1.08995 * 109.48755 * 178.89094 * 12 11 10 36 36 H 1.08993 * 113.79499 * 205.43874 * 14 13 12 37 37 H 1.09001 * 113.79235 * 336.91424 * 14 13 12 38 38 H 1.08007 * 119.92581 * 359.97438 * 19 18 16 39 39 H 1.07999 * 119.85523 * 180.28152 * 20 19 18 40 40 H 1.07990 * 119.93326 * 179.74195 * 21 20 19 41 41 H 0.97004 * 119.99707 * 359.97438 * 24 23 22 42 42 H 0.96998 * 120.00465 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.14641 * 0.02564 * 26 18 16 44 44 H 1.09001 * 113.78588 * 221.44257 * 27 15 14 45 45 H 1.08995 * 113.78968 * 89.97888 * 27 15 14 46 46 H 1.08998 * 109.64131 * 248.31036 * 28 9 7 47 47 H 1.09005 * 109.63970 * 8.92103 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0129 -1.2465 -0.3995 9 7 1.4238 -2.3316 0.5047 10 6 0.4701 -2.2470 1.6188 11 6 0.9402 -3.1497 2.7567 12 6 1.1110 -4.5799 2.2351 13 6 2.1274 -4.5850 1.0964 14 6 3.5785 -4.4111 1.5646 15 7 3.6240 -5.8857 1.6307 16 6 4.3635 -6.7772 2.3198 17 8 4.1090 -7.9635 2.2466 18 6 5.4842 -6.3123 3.1648 19 6 5.8428 -4.9621 3.1713 20 6 6.8852 -4.5254 3.9641 21 6 7.5876 -5.4205 4.7468 22 6 7.2432 -6.7740 4.7453 23 6 7.9959 -7.7309 5.5844 24 7 9.0159 -7.2975 6.3513 25 8 7.6948 -8.9086 5.5824 26 6 6.1885 -7.2205 3.9519 27 6 2.5348 -5.9919 0.6392 28 6 1.7403 -3.6557 -0.0529 29 1 -0.4849 -0.8357 -0.0861 30 1 0.4130 -1.2175 1.9723 31 1 -0.5139 -2.5729 1.2817 32 1 0.2019 -3.1408 3.5584 33 1 1.8945 -2.7847 3.1365 34 1 0.1535 -4.9504 1.8694 35 1 1.4655 -5.2213 3.0419 36 1 4.2366 -3.9843 0.8078 37 1 3.6720 -3.9243 2.5354 38 1 5.3006 -4.2576 2.5577 39 1 7.1555 -3.4798 3.9689 40 1 8.4046 -5.0731 5.3616 41 1 9.2564 -6.3578 6.3526 42 1 9.5099 -7.9253 6.9015 43 1 5.9184 -8.2662 3.9469 44 1 1.7993 -6.7611 0.8748 45 1 2.8825 -6.0354 -0.3929 46 1 0.8665 -4.0546 -0.5681 47 1 2.5731 -3.5697 -0.7509 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981851073.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:48 Heat of formation + Delta-G solvation = 14.969134 kcal Electronic energy + Delta-G solvation = -30008.396018 eV Core-core repulsion = 25964.821305 eV Total energy + Delta-G solvation = -4043.574713 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.04295 -40.24619 -38.82229 -37.71724 -36.10337 -34.25731 -32.95578 -31.81038 -31.37641 -30.66296 -29.72266 -26.48680 -26.24770 -25.22772 -24.46666 -23.22727 -22.39465 -21.42079 -20.70094 -19.62300 -18.39726 -18.19166 -17.38450 -17.20688 -16.78122 -16.29611 -15.85373 -15.75425 -15.09365 -14.75142 -14.57670 -14.47026 -14.20433 -14.05684 -14.02902 -13.67526 -13.53379 -13.27118 -12.96327 -12.72266 -12.52162 -12.24747 -12.00252 -11.82303 -11.68595 -11.43845 -11.14062 -10.78242 -10.50442 -10.46467 -10.31756 -10.14565 -10.12956 -10.08478 -9.84504 -9.74417 -9.39071 -9.36689 -9.32873 -8.63543 -8.41555 -6.93266 -6.13905 -3.35897 0.32700 0.76915 2.31051 2.73275 2.94641 3.10549 3.43351 3.45630 3.64168 3.64263 4.16211 4.32759 4.40269 4.49189 4.57847 4.63284 4.84358 4.95541 5.03223 5.09780 5.20578 5.22871 5.42064 5.47941 5.52262 5.56647 5.57414 5.66350 5.70286 5.76472 5.85995 5.90235 5.94819 6.00478 6.10330 6.23141 6.32870 6.36310 6.40901 6.44201 6.52794 6.60362 6.65045 6.89073 6.98738 7.11909 7.69763 7.84839 7.94581 8.11854 8.50961 9.03113 9.75422 10.22451 11.13004 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.015325 B = 0.002747 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.645512 B =10191.862206 C =11369.392709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.019 4.019 3 Si 1.062 2.938 4 H -0.292 1.292 5 H -0.286 1.286 6 H -0.293 1.293 7 C -0.354 4.354 8 H 0.053 0.947 9 N -0.594 5.594 10 C 0.151 3.849 11 C -0.136 4.136 12 C -0.084 4.084 13 C -0.100 4.100 14 C 0.112 3.888 15 N -0.635 5.635 16 C 0.576 3.424 17 O -0.542 6.542 18 C -0.133 4.133 19 C -0.069 4.069 20 C -0.132 4.132 21 C -0.065 4.065 22 C -0.153 4.153 23 C 0.566 3.434 24 N -0.852 5.852 25 O -0.535 6.535 26 C -0.003 4.003 27 C 0.116 3.884 28 C 0.162 3.838 29 H 0.270 0.730 30 H 0.075 0.925 31 H 0.017 0.983 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.149 0.851 39 H 0.139 0.861 40 H 0.130 0.870 41 H 0.401 0.599 42 H 0.406 0.594 43 H 0.149 0.851 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.024 0.976 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.565 -7.882 9.823 19.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.222 4.222 3 Si 0.892 3.108 4 H -0.219 1.219 5 H -0.211 1.211 6 H -0.220 1.220 7 C -0.483 4.483 8 H 0.071 0.929 9 N -0.317 5.317 10 C 0.025 3.975 11 C -0.175 4.175 12 C -0.122 4.122 13 C -0.103 4.103 14 C -0.010 4.010 15 N -0.369 5.369 16 C 0.367 3.633 17 O -0.420 6.420 18 C -0.136 4.136 19 C -0.088 4.088 20 C -0.150 4.150 21 C -0.084 4.084 22 C -0.156 4.156 23 C 0.352 3.648 24 N -0.416 5.416 25 O -0.412 6.412 26 C -0.022 4.022 27 C -0.006 4.006 28 C 0.035 3.965 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.035 0.965 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.166 0.834 39 H 0.156 0.844 40 H 0.148 0.852 41 H 0.230 0.770 42 H 0.237 0.763 43 H 0.166 0.834 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.041 0.959 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.035 -7.689 9.816 18.774 hybrid contribution 0.708 -1.370 0.156 1.550 sum 14.743 -9.059 9.972 19.972 Atomic orbital electron populations 1.70779 1.06724 1.30432 1.46866 1.25880 0.96484 1.01589 0.98249 0.83571 0.74881 0.76188 0.76191 1.21945 1.21139 1.22007 1.19850 0.97436 0.88344 1.42679 0.92883 1.44055 1.51736 1.01396 1.34544 1.20802 0.91203 0.98699 0.86759 1.21993 1.01056 0.95264 0.99166 1.21119 0.97618 0.97607 0.95815 1.22600 0.94408 0.94411 0.98874 1.23444 0.96831 0.78922 1.01795 1.50010 1.36776 1.08090 1.42058 1.17818 0.80904 0.84864 0.79743 1.90776 1.69763 1.15917 1.65583 1.19937 0.98544 0.94210 1.00876 1.22293 0.95188 0.95105 0.96176 1.21138 0.96244 1.00418 0.97219 1.21468 0.98110 0.91960 0.96851 1.19785 0.99869 0.93837 1.02111 1.18214 0.79749 0.87684 0.79165 1.43728 1.35882 1.13831 1.48161 1.90851 1.67194 1.17389 1.65781 1.21376 0.90382 1.00803 0.89675 1.23276 0.87213 0.97740 0.92379 1.20809 0.98172 0.86019 0.91460 0.91961 0.90700 0.96516 0.92832 0.92422 0.91925 0.93002 0.89016 0.89584 0.83391 0.84358 0.85218 0.76966 0.76326 0.83360 0.90106 0.89469 0.95868 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.75 12.57 55.49 0.70 -25.06 16 2 C -0.02 -0.49 4.65 -17.43 -0.08 -0.57 16 3 Si 1.06 23.54 29.99 -169.99 -5.10 18.45 16 4 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.35 -8.93 9.45 -15.06 -0.14 -9.07 16 8 H 0.05 1.34 7.95 -52.49 -0.42 0.92 16 9 N -0.59 -13.17 2.80 -172.76 -0.48 -13.65 16 10 C 0.15 3.20 4.71 -4.00 -0.02 3.18 16 11 C -0.14 -2.28 5.99 -26.80 -0.16 -2.44 16 12 C -0.08 -1.28 5.02 -26.82 -0.13 -1.41 16 13 C -0.10 -1.50 0.87 -154.43 -0.13 -1.63 16 14 C 0.11 1.52 5.20 -3.17 -0.02 1.50 16 15 N -0.64 -9.10 3.44 -181.56 -0.62 -9.72 16 16 C 0.58 9.10 7.99 -12.32 -0.10 9.01 16 17 O -0.54 -10.32 17.08 5.32 0.09 -10.23 16 18 C -0.13 -1.76 5.87 -105.02 -0.62 -2.38 16 19 C -0.07 -0.75 9.13 -39.10 -0.36 -1.11 16 20 C -0.13 -1.10 10.02 -39.70 -0.40 -1.50 16 21 C -0.06 -0.49 9.54 -39.10 -0.37 -0.87 16 22 C -0.15 -1.61 5.87 -105.02 -0.62 -2.23 16 23 C 0.57 6.05 8.05 -12.32 -0.10 5.95 16 24 N -0.85 -4.89 8.82 30.53 0.27 -4.62 16 25 O -0.54 -8.05 17.18 5.31 0.09 -7.96 16 26 C 0.00 -0.03 9.14 -38.78 -0.35 -0.39 16 27 C 0.12 1.60 7.98 -3.18 -0.03 1.57 16 28 C 0.16 2.95 5.71 -3.81 -0.02 2.93 16 29 H 0.27 7.72 7.01 -40.82 -0.29 7.43 16 30 H 0.07 1.80 6.55 -51.93 -0.34 1.46 16 31 H 0.02 0.37 7.96 -51.93 -0.41 -0.05 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.98 7.37 -51.93 -0.38 0.59 16 34 H 0.06 0.94 8.14 -51.94 -0.42 0.52 16 35 H 0.05 0.77 8.02 -51.93 -0.42 0.35 16 36 H 0.09 1.20 7.91 -51.93 -0.41 0.79 16 37 H 0.09 1.14 6.02 -51.93 -0.31 0.82 16 38 H 0.15 1.55 3.95 -52.48 -0.21 1.35 16 39 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.13 0.47 6.39 -52.49 -0.34 0.14 16 41 H 0.40 1.07 6.85 -40.82 -0.28 0.79 16 42 H 0.41 1.81 8.93 -40.82 -0.36 1.45 16 43 H 0.15 2.22 7.24 -52.49 -0.38 1.84 16 44 H 0.08 1.11 8.09 -51.93 -0.42 0.69 16 45 H 0.09 1.09 8.09 -51.93 -0.42 0.67 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.06 1.08 7.78 -51.93 -0.40 0.67 16 LS Contribution 376.94 15.07 5.68 5.68 Total: -1.00 -33.81 376.94 -9.30 -43.11 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -6.28 Total: 3.47 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -3.65 Total: 0.54 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: -0.14 Total: -53.04 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: 0.18 Total: -18.19 kcal Atomic # 14 Polarization: 23.54 SS G_CDS: -5.10 Total: 18.45 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.81 -9.30 -43.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981851073.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.075 kcal (2) G-P(sol) polarization free energy of solvation -33.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds