Wall clock time and date at job start Wed Apr 1 2020 03:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99953 * 2 1 4 4 H 1.48494 * 109.47136 * 89.99664 * 3 2 1 5 5 H 1.48495 * 109.46858 * 210.00101 * 3 2 1 6 6 H 1.48508 * 109.46890 * 329.99772 * 3 2 1 7 7 C 1.38812 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99947 * 324.57355 * 7 2 1 9 9 N 1.36937 * 119.99800 * 144.57618 * 7 2 1 10 10 C 1.46900 * 120.69088 * 331.77380 * 9 7 2 11 11 C 1.52669 * 109.34481 * 235.31137 * 10 9 7 12 12 C 1.53184 * 109.42759 * 303.77074 * 11 10 9 13 13 C 1.52632 * 109.35491 * 58.92567 * 12 11 10 14 14 C 1.53462 * 113.68300 * 74.06197 * 13 12 11 15 15 N 1.47676 * 85.96768 * 91.17542 * 14 13 12 16 16 C 1.34774 * 134.44833 * 204.28472 * 15 14 13 17 17 O 1.21365 * 119.99700 * 180.02562 * 16 15 14 18 18 C 1.49352 * 120.00616 * 0.02562 * 16 15 14 19 19 O 1.21379 * 119.99635 * 0.02562 * 18 16 15 20 20 N 1.34770 * 120.00130 * 179.97438 * 18 16 15 21 21 C 1.39722 * 120.00010 * 174.69533 * 20 18 16 22 22 C 1.38926 * 120.07598 * 326.54723 * 21 20 18 23 23 C 1.38102 * 119.92571 * 179.81189 * 22 21 20 24 24 C 1.38299 * 120.07349 * 0.44585 * 23 22 21 25 25 C 1.38291 * 120.15074 * 359.78644 * 24 23 22 26 26 C 1.38094 * 120.07769 * 0.02562 * 25 24 23 27 27 C 1.47673 * 91.09013 * 24.28679 * 15 14 13 28 28 C 1.47111 * 120.68710 * 152.04765 * 9 7 2 29 29 H 0.97008 * 120.00081 * 175.33224 * 1 2 3 30 30 H 1.09001 * 109.53498 * 355.23642 * 10 9 7 31 31 H 1.08998 * 109.53276 * 115.47097 * 10 9 7 32 32 H 1.08998 * 109.56158 * 183.71636 * 11 10 9 33 33 H 1.08998 * 109.34549 * 63.68817 * 11 10 9 34 34 H 1.09005 * 109.49049 * 298.96434 * 12 11 10 35 35 H 1.08993 * 109.49450 * 178.89223 * 12 11 10 36 36 H 1.08997 * 113.79149 * 205.43748 * 14 13 12 37 37 H 1.08998 * 113.79260 * 336.91376 * 14 13 12 38 38 H 0.97001 * 120.00490 * 354.70468 * 20 18 16 39 39 H 1.08005 * 120.04010 * 0.02562 * 22 21 20 40 40 H 1.07992 * 119.96382 * 180.21192 * 23 22 21 41 41 H 1.07993 * 119.92148 * 179.76637 * 24 23 22 42 42 H 1.07998 * 119.96029 * 179.97438 * 25 24 23 43 43 H 1.08004 * 120.03928 * 179.97438 * 26 25 24 44 44 H 1.09006 * 113.78832 * 221.44299 * 27 15 14 45 45 H 1.09003 * 113.79338 * 89.97922 * 27 15 14 46 46 H 1.09002 * 109.64156 * 248.30455 * 28 9 7 47 47 H 1.08997 * 109.64144 * 8.92718 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 1.4000 5 1 3.5477 1.4402 -0.7000 6 1 1.4476 2.6527 -0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.6202 -2.0506 0.5431 9 7 3.1895 -1.3122 -0.6868 10 6 3.4461 -0.4844 -1.8730 11 6 3.7914 -1.3873 -3.0546 12 6 4.9847 -2.2744 -2.6863 13 6 4.6324 -3.1128 -1.4605 14 6 3.6632 -4.2645 -1.7592 15 7 4.8708 -5.0827 -1.9892 16 6 5.1343 -6.1976 -2.6993 17 8 6.2553 -6.6627 -2.7047 18 6 4.0469 -6.8606 -3.4794 19 8 2.9259 -6.3952 -3.4743 20 7 4.3106 -7.9751 -4.1898 21 6 3.2727 -8.6580 -4.8290 22 6 2.0064 -8.6917 -4.2588 23 6 0.9818 -9.3643 -4.8952 24 6 1.2176 -10.0117 -6.0944 25 6 2.4782 -9.9843 -6.6624 26 6 3.5063 -9.3103 -6.0333 27 6 5.6738 -4.1900 -1.1296 28 6 4.2233 -2.2661 -0.2562 29 1 -0.4851 -0.8373 -0.0684 30 1 2.5561 0.0987 -2.1099 31 1 4.2813 0.1873 -1.6749 32 1 4.0468 -0.7749 -3.9194 33 1 2.9323 -2.0141 -3.2933 34 1 5.8482 -1.6480 -2.4625 35 1 5.2198 -2.9332 -3.5222 36 1 3.0760 -4.5799 -0.8968 37 1 3.0595 -4.1104 -2.6536 38 1 5.2209 -8.3033 -4.2572 39 1 1.8224 -8.1895 -3.3204 40 1 -0.0036 -9.3880 -4.4542 41 1 0.4155 -10.5401 -6.5881 42 1 2.6590 -10.4912 -7.5987 43 1 4.4906 -9.2896 -6.4773 44 1 6.6675 -3.9769 -1.5238 45 1 5.6848 -4.4834 -0.0798 46 1 5.0897 -1.7222 0.1204 47 1 3.8236 -2.9112 0.5262 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981870969.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:21 Heat of formation + Delta-G solvation = 31.724070 kcal Electronic energy + Delta-G solvation = -30024.517113 eV Core-core repulsion = 25981.668949 eV Total energy + Delta-G solvation = -4042.848164 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.32769 -40.37806 -38.88862 -37.99920 -36.20091 -35.09207 -32.80890 -31.20134 -30.90657 -30.59788 -29.98371 -26.95736 -26.22485 -25.13803 -24.47442 -23.09592 -22.04751 -21.96643 -20.92493 -19.82381 -18.37839 -18.07785 -17.60915 -17.26381 -16.91511 -16.32716 -16.21129 -15.53110 -15.22363 -14.91067 -14.60240 -14.37411 -14.16335 -13.88684 -13.73211 -13.63622 -13.54847 -13.16756 -13.08378 -12.99478 -12.39390 -12.19156 -12.10223 -11.85050 -11.81688 -11.57283 -11.53733 -11.29100 -10.73263 -10.70783 -10.58608 -10.32952 -10.14552 -9.77424 -9.63939 -9.57112 -9.23311 -9.19773 -8.82139 -8.45695 -8.29321 -7.01622 -6.37354 -3.27338 0.79745 1.12690 1.46186 2.03216 3.03033 3.18710 3.50676 3.56485 3.57125 3.70718 4.06535 4.44109 4.61316 4.64735 4.67498 4.88901 4.90881 4.98539 5.08806 5.12594 5.22431 5.26853 5.31348 5.40329 5.47456 5.55370 5.60397 5.72483 5.73243 5.87336 5.90484 5.97539 6.00842 6.02829 6.18530 6.19876 6.28189 6.32828 6.36771 6.46207 6.55137 6.60695 6.69752 6.82033 6.83398 6.98327 7.42867 7.44644 7.82822 8.03360 8.43892 9.01217 9.62388 10.21842 11.03314 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.015673 B = 0.002699 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.101983 B =10373.316583 C =11437.652657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.005 3.995 3 Si 1.017 2.983 4 H -0.298 1.298 5 H -0.269 1.269 6 H -0.295 1.295 7 C -0.362 4.362 8 H 0.064 0.936 9 N -0.596 5.596 10 C 0.143 3.857 11 C -0.139 4.139 12 C -0.083 4.083 13 C -0.107 4.107 14 C 0.130 3.870 15 N -0.609 5.609 16 C 0.526 3.474 17 O -0.534 6.534 18 C 0.509 3.491 19 O -0.486 6.486 20 N -0.651 5.651 21 C 0.145 3.855 22 C -0.120 4.120 23 C -0.099 4.099 24 C -0.135 4.135 25 C -0.101 4.101 26 C -0.143 4.143 27 C 0.117 3.883 28 C 0.162 3.838 29 H 0.267 0.733 30 H 0.065 0.935 31 H 0.030 0.970 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.421 0.579 39 H 0.135 0.865 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.028 0.972 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.275 -17.416 -10.671 22.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.200 4.200 3 Si 0.846 3.154 4 H -0.227 1.227 5 H -0.195 1.195 6 H -0.221 1.221 7 C -0.489 4.489 8 H 0.082 0.918 9 N -0.319 5.319 10 C 0.017 3.983 11 C -0.178 4.178 12 C -0.120 4.120 13 C -0.110 4.110 14 C 0.009 3.991 15 N -0.343 5.343 16 C 0.309 3.691 17 O -0.412 6.412 18 C 0.291 3.709 19 O -0.358 6.358 20 N -0.298 5.298 21 C 0.051 3.949 22 C -0.140 4.140 23 C -0.117 4.117 24 C -0.154 4.154 25 C -0.120 4.120 26 C -0.164 4.164 27 C -0.004 4.004 28 C 0.035 3.965 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.259 0.741 39 H 0.153 0.847 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.145 0.855 43 H 0.145 0.855 44 H 0.103 0.897 45 H 0.111 0.889 46 H 0.046 0.954 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.884 -15.805 -10.629 21.017 hybrid contribution 0.605 -1.895 -0.055 1.990 sum 9.489 -17.700 -10.684 22.748 Atomic orbital electron populations 1.70892 1.07012 1.29837 1.45747 1.26106 0.95893 1.00824 0.97128 0.84635 0.76616 0.77311 0.76852 1.22653 1.19458 1.22149 1.19994 0.97425 0.97897 1.33599 0.91844 1.44295 1.16107 1.44050 1.27464 1.21266 0.98986 0.92301 0.85728 1.22023 0.97598 0.99041 0.99160 1.21111 0.98575 0.97327 0.95026 1.22678 0.94446 0.94341 0.99529 1.23410 0.88289 0.85012 1.02420 1.50043 1.16131 1.23356 1.44733 1.19449 0.87971 0.80275 0.81412 1.90750 1.22680 1.63107 1.64703 1.20378 0.89261 0.80960 0.80322 1.90822 1.22720 1.62191 1.60034 1.43177 1.11426 1.25581 1.49617 1.17752 0.88804 0.95663 0.92652 1.21216 0.91943 0.99836 1.01030 1.21088 0.98900 0.96399 0.95328 1.21185 0.97153 1.00602 0.96431 1.20946 0.92637 0.98767 0.99640 1.20917 1.00453 1.01322 0.93668 1.23447 0.96934 0.85380 0.94682 1.20823 0.92156 0.91649 0.91891 0.92274 0.91655 0.95230 0.92608 0.91948 0.91778 0.93072 0.88990 0.88903 0.74092 0.84728 0.85457 0.85837 0.85547 0.85523 0.89708 0.88899 0.95424 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.85 13.70 55.49 0.76 -26.09 16 2 C 0.00 0.13 4.84 -17.43 -0.08 0.05 16 3 Si 1.02 24.46 26.95 -169.99 -4.58 19.88 16 4 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.27 -5.87 4.72 56.52 0.27 -5.60 16 6 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 7 C -0.36 -9.56 9.72 -15.06 -0.15 -9.70 16 8 H 0.06 1.80 8.06 -52.49 -0.42 1.38 16 9 N -0.60 -13.19 2.72 -172.75 -0.47 -13.66 16 10 C 0.14 2.93 4.27 -3.99 -0.02 2.91 16 11 C -0.14 -2.36 5.99 -26.81 -0.16 -2.52 16 12 C -0.08 -1.23 5.02 -26.82 -0.13 -1.37 16 13 C -0.11 -1.61 0.87 -154.43 -0.13 -1.75 16 14 C 0.13 2.03 6.71 -3.17 -0.02 2.01 16 15 N -0.61 -8.83 3.45 -180.99 -0.62 -9.45 16 16 C 0.53 7.77 8.11 -11.63 -0.09 7.67 16 17 O -0.53 -8.48 17.21 5.48 0.09 -8.39 16 18 C 0.51 7.15 7.62 -11.63 -0.09 7.06 16 19 O -0.49 -7.89 12.78 5.47 0.07 -7.82 16 20 N -0.65 -7.42 5.32 -10.30 -0.05 -7.48 16 21 C 0.15 1.64 6.27 -83.75 -0.53 1.11 16 22 C -0.12 -1.43 8.65 -39.38 -0.34 -1.78 16 23 C -0.10 -0.98 10.04 -39.61 -0.40 -1.37 16 24 C -0.14 -1.14 10.04 -39.54 -0.40 -1.54 16 25 C -0.10 -0.82 10.04 -39.61 -0.40 -1.22 16 26 C -0.14 -1.30 9.96 -39.38 -0.39 -1.69 16 27 C 0.12 1.52 7.97 -3.18 -0.03 1.49 16 28 C 0.16 2.88 5.71 -3.81 -0.02 2.86 16 29 H 0.27 7.94 8.73 -40.82 -0.36 7.59 16 30 H 0.07 1.48 5.68 -51.93 -0.29 1.18 16 31 H 0.03 0.60 6.69 -51.93 -0.35 0.25 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 1.15 7.37 -51.93 -0.38 0.77 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.74 8.02 -51.93 -0.42 0.32 16 36 H 0.09 1.48 7.97 -51.93 -0.41 1.06 16 37 H 0.09 1.60 6.65 -51.93 -0.35 1.25 16 38 H 0.42 3.96 8.30 -40.82 -0.34 3.62 16 39 H 0.13 1.79 6.43 -52.48 -0.34 1.45 16 40 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 41 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 44 H 0.08 1.02 8.09 -51.93 -0.42 0.60 16 45 H 0.09 1.07 8.09 -51.93 -0.42 0.65 16 46 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 1.13 7.78 -51.93 -0.40 0.72 16 LS Contribution 377.44 15.07 5.69 5.69 Total: -1.00 -31.63 377.44 -9.29 -40.92 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.79 Total: 4.17 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -3.38 Total: 2.23 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -0.39 Total: -56.69 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: 0.16 Total: -16.21 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -4.58 Total: 19.88 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.63 -9.29 -40.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981870969.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.644 kcal (2) G-P(sol) polarization free energy of solvation -31.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds