Wall clock time and date at job start Wed Apr 1 2020 03:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99953 * 2 1 4 4 H 1.48494 * 109.47136 * 89.99664 * 3 2 1 5 5 H 1.48495 * 109.46858 * 210.00101 * 3 2 1 6 6 H 1.48508 * 109.46890 * 329.99772 * 3 2 1 7 7 C 1.38812 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99947 * 324.57355 * 7 2 1 9 9 N 1.36937 * 119.99800 * 144.57618 * 7 2 1 10 10 C 1.46900 * 120.69088 * 331.77380 * 9 7 2 11 11 C 1.52669 * 109.34481 * 235.31137 * 10 9 7 12 12 C 1.53184 * 109.42759 * 303.77074 * 11 10 9 13 13 C 1.52632 * 109.35491 * 58.92567 * 12 11 10 14 14 C 1.53462 * 113.68300 * 74.06197 * 13 12 11 15 15 N 1.47676 * 85.96768 * 91.17542 * 14 13 12 16 16 C 1.34774 * 134.44833 * 204.28472 * 15 14 13 17 17 O 1.21365 * 119.99700 * 180.02562 * 16 15 14 18 18 C 1.49352 * 120.00616 * 0.02562 * 16 15 14 19 19 O 1.21379 * 119.99635 * 0.02562 * 18 16 15 20 20 N 1.34770 * 120.00130 * 179.97438 * 18 16 15 21 21 C 1.39722 * 120.00010 * 174.69533 * 20 18 16 22 22 C 1.38926 * 120.07598 * 326.54723 * 21 20 18 23 23 C 1.38102 * 119.92571 * 179.81189 * 22 21 20 24 24 C 1.38299 * 120.07349 * 0.44585 * 23 22 21 25 25 C 1.38291 * 120.15074 * 359.78644 * 24 23 22 26 26 C 1.38094 * 120.07769 * 0.02562 * 25 24 23 27 27 C 1.47673 * 91.09013 * 24.28679 * 15 14 13 28 28 C 1.47111 * 120.68710 * 152.04765 * 9 7 2 29 29 H 0.97008 * 120.00081 * 175.33224 * 1 2 3 30 30 H 1.09001 * 109.53498 * 355.23642 * 10 9 7 31 31 H 1.08998 * 109.53276 * 115.47097 * 10 9 7 32 32 H 1.08998 * 109.56158 * 183.71636 * 11 10 9 33 33 H 1.08998 * 109.34549 * 63.68817 * 11 10 9 34 34 H 1.09005 * 109.49049 * 298.96434 * 12 11 10 35 35 H 1.08993 * 109.49450 * 178.89223 * 12 11 10 36 36 H 1.08997 * 113.79149 * 205.43748 * 14 13 12 37 37 H 1.08998 * 113.79260 * 336.91376 * 14 13 12 38 38 H 0.97001 * 120.00490 * 354.70468 * 20 18 16 39 39 H 1.08005 * 120.04010 * 0.02562 * 22 21 20 40 40 H 1.07992 * 119.96382 * 180.21192 * 23 22 21 41 41 H 1.07993 * 119.92148 * 179.76637 * 24 23 22 42 42 H 1.07998 * 119.96029 * 179.97438 * 25 24 23 43 43 H 1.08004 * 120.03928 * 179.97438 * 26 25 24 44 44 H 1.09006 * 113.78832 * 221.44299 * 27 15 14 45 45 H 1.09003 * 113.79338 * 89.97922 * 27 15 14 46 46 H 1.09002 * 109.64156 * 248.30455 * 28 9 7 47 47 H 1.08997 * 109.64144 * 8.92718 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 1.4000 5 1 3.5477 1.4402 -0.7000 6 1 1.4476 2.6527 -0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.6202 -2.0506 0.5431 9 7 3.1895 -1.3122 -0.6868 10 6 3.4461 -0.4844 -1.8730 11 6 3.7914 -1.3873 -3.0546 12 6 4.9847 -2.2744 -2.6863 13 6 4.6324 -3.1128 -1.4605 14 6 3.6632 -4.2645 -1.7592 15 7 4.8708 -5.0827 -1.9892 16 6 5.1343 -6.1976 -2.6993 17 8 6.2553 -6.6627 -2.7047 18 6 4.0469 -6.8606 -3.4794 19 8 2.9259 -6.3952 -3.4743 20 7 4.3106 -7.9751 -4.1898 21 6 3.2727 -8.6580 -4.8290 22 6 2.0064 -8.6917 -4.2588 23 6 0.9818 -9.3643 -4.8952 24 6 1.2176 -10.0117 -6.0944 25 6 2.4782 -9.9843 -6.6624 26 6 3.5063 -9.3103 -6.0333 27 6 5.6738 -4.1900 -1.1296 28 6 4.2233 -2.2661 -0.2562 29 1 -0.4851 -0.8373 -0.0684 30 1 2.5561 0.0987 -2.1099 31 1 4.2813 0.1873 -1.6749 32 1 4.0468 -0.7749 -3.9194 33 1 2.9323 -2.0141 -3.2933 34 1 5.8482 -1.6480 -2.4625 35 1 5.2198 -2.9332 -3.5222 36 1 3.0760 -4.5799 -0.8968 37 1 3.0595 -4.1104 -2.6536 38 1 5.2209 -8.3033 -4.2572 39 1 1.8224 -8.1895 -3.3204 40 1 -0.0036 -9.3880 -4.4542 41 1 0.4155 -10.5401 -6.5881 42 1 2.6590 -10.4912 -7.5987 43 1 4.4906 -9.2896 -6.4773 44 1 6.6675 -3.9769 -1.5238 45 1 5.6848 -4.4834 -0.0798 46 1 5.0897 -1.7222 0.1204 47 1 3.8236 -2.9112 0.5262 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981870969.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:20 Heat of formation + Delta-G solvation = 11.519270 kcal Electronic energy + Delta-G solvation = -30025.393259 eV Core-core repulsion = 25981.668949 eV Total energy + Delta-G solvation = -4043.724310 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.44333 -41.46517 -39.89559 -39.10927 -37.72360 -36.06577 -34.61221 -32.59660 -32.01246 -31.89793 -30.82839 -28.21826 -27.44051 -26.88630 -25.54640 -23.87536 -23.59342 -23.07596 -22.32293 -20.93369 -19.66121 -19.24562 -19.11575 -18.59632 -17.95740 -17.46671 -17.09064 -16.62259 -16.54599 -16.34971 -15.86674 -15.54000 -15.47116 -15.27685 -14.93933 -14.83166 -14.66553 -14.40555 -14.25756 -13.91750 -13.86145 -13.53189 -13.50338 -13.22645 -13.15676 -12.82031 -12.53675 -12.32761 -12.25954 -12.09006 -11.77702 -11.73328 -11.55588 -11.41308 -11.20256 -11.06674 -10.74811 -10.34858 -10.00433 -9.94437 -9.27981 -8.94193 -8.51470 -5.37101 -0.15550 0.38990 0.51183 0.98989 1.57151 1.61821 1.80178 1.92121 2.12134 2.65864 2.80861 2.95558 3.03209 3.25210 3.58518 3.73286 3.85587 3.91245 3.98312 4.17195 4.22440 4.25230 4.28047 4.40837 4.44209 4.47174 4.49959 4.51966 4.56914 4.60180 4.72857 4.84546 4.90229 5.03553 5.03816 5.07348 5.16191 5.18929 5.19782 5.20843 5.33465 5.45374 5.52107 5.55405 5.85944 5.90711 5.99632 6.22022 6.32589 6.45795 6.72918 6.97097 7.69578 8.19992 8.85638 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.015673 B = 0.002699 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.101983 B =10373.316583 C =11437.652657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.052 4.052 3 Si 1.063 2.937 4 H -0.299 1.299 5 H -0.229 1.229 6 H -0.305 1.305 7 C -0.340 4.340 8 H 0.029 0.971 9 N -0.611 5.611 10 C 0.137 3.863 11 C -0.132 4.132 12 C -0.076 4.076 13 C -0.101 4.101 14 C 0.131 3.869 15 N -0.609 5.609 16 C 0.528 3.472 17 O -0.543 6.543 18 C 0.507 3.493 19 O -0.517 6.517 20 N -0.635 5.635 21 C 0.119 3.881 22 C -0.146 4.146 23 C -0.111 4.111 24 C -0.131 4.131 25 C -0.099 4.099 26 C -0.140 4.140 27 C 0.127 3.873 28 C 0.161 3.839 29 H 0.251 0.749 30 H 0.038 0.962 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.038 0.962 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.431 0.569 39 H 0.109 0.891 40 H 0.137 0.863 41 H 0.151 0.849 42 H 0.160 0.840 43 H 0.151 0.849 44 H 0.106 0.894 45 H 0.110 0.890 46 H 0.052 0.948 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.602 -18.326 -12.691 25.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.249 4.249 3 Si 0.889 3.111 4 H -0.227 1.227 5 H -0.153 1.153 6 H -0.233 1.233 7 C -0.470 4.470 8 H 0.047 0.953 9 N -0.335 5.335 10 C 0.012 3.988 11 C -0.171 4.171 12 C -0.114 4.114 13 C -0.103 4.103 14 C 0.009 3.991 15 N -0.342 5.342 16 C 0.311 3.689 17 O -0.422 6.422 18 C 0.289 3.711 19 O -0.392 6.392 20 N -0.283 5.283 21 C 0.026 3.974 22 C -0.166 4.166 23 C -0.130 4.130 24 C -0.150 4.150 25 C -0.117 4.117 26 C -0.160 4.160 27 C 0.006 3.994 28 C 0.035 3.965 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.057 0.943 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.270 0.730 39 H 0.127 0.873 40 H 0.155 0.845 41 H 0.169 0.831 42 H 0.178 0.822 43 H 0.169 0.831 44 H 0.124 0.876 45 H 0.128 0.872 46 H 0.070 0.930 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.287 -16.767 -12.671 24.345 hybrid contribution -0.474 -1.812 0.521 1.944 sum 11.814 -18.579 -12.150 25.147 Atomic orbital electron populations 1.71015 1.08332 1.28807 1.50008 1.27184 0.95808 1.04285 0.97664 0.84041 0.77029 0.73109 0.76953 1.22706 1.15327 1.23268 1.19846 0.98645 0.96371 1.32100 0.95344 1.44368 1.15978 1.45125 1.28033 1.21342 0.98339 0.92842 0.86242 1.21905 0.97847 0.98773 0.98561 1.21093 0.98143 0.97223 0.94925 1.22548 0.95053 0.94055 0.98664 1.23233 0.88676 0.86165 1.01038 1.50029 1.15829 1.23429 1.44940 1.19514 0.87899 0.80181 0.81278 1.90740 1.22956 1.63337 1.65147 1.20354 0.88676 0.81522 0.80581 1.90820 1.23700 1.63289 1.61373 1.43074 1.12090 1.24542 1.48561 1.17982 0.88482 0.96949 0.93951 1.21192 0.93327 1.01183 1.00890 1.21302 0.98899 0.96570 0.96203 1.21564 0.98332 0.99574 0.95505 1.21398 0.91971 0.97845 1.00476 1.21243 1.01998 1.00212 0.92553 1.23529 0.96879 0.83401 0.95559 1.20957 0.91516 0.91065 0.92974 0.94041 0.94361 0.93407 0.90012 0.94349 0.89384 0.92159 0.90223 0.90949 0.72966 0.87304 0.84548 0.83095 0.82216 0.83127 0.87562 0.87209 0.93031 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.01 13.70 21.65 0.30 -58.71 16 2 C -0.05 -2.97 4.84 84.86 0.41 -2.56 16 3 Si 1.06 49.83 26.95 68.60 1.85 51.68 16 4 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 5 H -0.23 -9.16 4.72 99.48 0.47 -8.69 16 6 H -0.31 -14.76 7.11 99.48 0.71 -14.06 16 7 C -0.34 -18.52 9.72 84.03 0.82 -17.71 16 8 H 0.03 1.72 8.06 -2.91 -0.02 1.69 16 9 N -0.61 -26.70 2.72 -700.47 -1.91 -28.61 16 10 C 0.14 5.39 4.27 86.19 0.37 5.76 16 11 C -0.13 -4.23 5.99 30.55 0.18 -4.05 16 12 C -0.08 -2.03 5.02 30.53 0.15 -1.87 16 13 C -0.10 -2.83 0.87 -52.03 -0.05 -2.88 16 14 C 0.13 4.15 6.71 86.30 0.58 4.73 16 15 N -0.61 -16.98 3.45 -844.88 -2.92 -19.89 16 16 C 0.53 15.16 8.11 87.24 0.71 15.86 16 17 O -0.54 -16.31 17.21 -3.29 -0.06 -16.37 16 18 C 0.51 14.44 7.62 87.24 0.66 15.10 16 19 O -0.52 -17.69 12.78 -3.34 -0.04 -17.73 16 20 N -0.64 -14.33 5.32 -304.85 -1.62 -15.95 16 21 C 0.12 2.66 6.27 38.21 0.24 2.90 16 22 C -0.15 -3.63 8.65 22.40 0.19 -3.43 16 23 C -0.11 -2.18 10.04 22.25 0.22 -1.96 16 24 C -0.13 -1.93 10.04 22.30 0.22 -1.70 16 25 C -0.10 -1.30 10.04 22.25 0.22 -1.07 16 26 C -0.14 -2.24 9.96 22.40 0.22 -2.02 16 27 C 0.13 2.91 7.97 86.30 0.69 3.60 16 28 C 0.16 5.45 5.71 86.19 0.49 5.95 16 29 H 0.25 15.92 8.73 -92.70 -0.81 15.11 16 30 H 0.04 1.70 5.68 -2.39 -0.01 1.69 16 31 H 0.05 1.73 6.69 -2.39 -0.02 1.71 16 32 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.04 1.41 7.37 -2.39 -0.02 1.39 16 34 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 35 H 0.06 1.54 8.02 -2.39 -0.02 1.52 16 36 H 0.08 2.69 7.97 -2.39 -0.02 2.67 16 37 H 0.07 2.60 6.65 -2.39 -0.02 2.59 16 38 H 0.43 7.67 8.30 -92.71 -0.77 6.90 16 39 H 0.11 3.20 6.43 -2.91 -0.02 3.18 16 40 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 41 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 42 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 43 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 44 H 0.11 2.07 8.09 -2.38 -0.02 2.05 16 45 H 0.11 2.19 8.09 -2.39 -0.02 2.17 16 46 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.05 1.94 7.78 -2.39 -0.02 1.92 16 Total: -1.00 -72.34 377.44 1.90 -70.44 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -0.05 Total: 20.50 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 6.35 Total: 14.65 kcal Atomic # 7 Polarization: -117.02 SS G_CDS: -6.15 Total: -123.17 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -0.10 Total: -34.10 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 1.85 Total: 51.68 kcal Total: -72.34 1.90 -70.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981870969.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.956 kcal (2) G-P(sol) polarization free energy of solvation -72.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds