Wall clock time and date at job start Wed Apr 1 2020 03:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00131 * 2 1 4 4 H 1.48493 * 109.46868 * 269.99881 * 3 2 1 5 5 H 1.48498 * 109.46971 * 29.99943 * 3 2 1 6 6 H 1.48493 * 109.47160 * 149.99667 * 3 2 1 7 7 C 1.38818 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99859 * 164.51935 * 7 2 1 9 9 N 1.36936 * 119.99732 * 344.52308 * 7 2 1 10 10 C 1.47001 * 121.37878 * 335.96523 * 9 7 2 11 11 C 1.50325 * 109.16812 * 222.96857 * 10 9 7 12 12 C 1.29455 * 123.65101 * 349.02488 * 11 10 9 13 13 C 1.50689 * 117.69332 * 180.85490 * 12 11 10 14 14 N 1.46497 * 109.47235 * 95.00224 * 13 12 11 15 15 C 1.34779 * 120.00494 * 179.97438 * 14 13 12 16 16 O 1.21514 * 119.99760 * 0.02562 * 15 14 13 17 17 C 1.48161 * 120.00535 * 179.97438 * 15 14 13 18 18 C 1.39617 * 120.88697 * 0.02562 * 17 15 14 19 19 C 1.38854 * 118.94437 * 179.97438 * 18 17 15 20 20 O 1.35691 * 119.61594 * 180.02562 * 19 18 17 21 21 N 1.32199 * 120.76125 * 0.02562 * 19 18 17 22 22 C 1.31883 * 121.96508 * 359.97438 * 21 19 18 23 23 C 1.50706 * 119.50915 * 179.97438 * 22 21 19 24 24 C 1.52995 * 117.49977 * 163.62249 * 23 22 21 25 25 C 1.52996 * 60.00216 * 252.51073 * 24 23 22 26 26 C 1.38018 * 120.97976 * 0.02562 * 22 21 19 27 27 C 1.49978 * 124.60688 * 1.13778 * 12 11 10 28 28 C 1.47343 * 121.37188 * 155.98998 * 9 7 2 29 29 H 0.97008 * 120.00112 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.52325 * 103.06240 * 10 9 7 31 31 H 1.08995 * 109.52080 * 342.88205 * 10 9 7 32 32 H 1.07993 * 118.17516 * 168.99920 * 11 10 9 33 33 H 1.08999 * 109.47785 * 334.99706 * 13 12 11 34 34 H 1.09005 * 109.47493 * 214.99890 * 13 12 11 35 35 H 0.97005 * 120.00192 * 359.97438 * 14 13 12 36 36 H 1.07998 * 120.52656 * 0.02562 * 18 17 15 37 37 H 0.96700 * 114.00110 * 269.99502 * 20 19 18 38 38 H 1.08995 * 115.54895 * 309.33115 * 23 22 21 39 39 H 1.09004 * 117.50018 * 359.97438 * 24 23 22 40 40 H 1.08999 * 117.50117 * 145.01756 * 24 23 22 41 41 H 1.08997 * 117.50093 * 252.50873 * 25 24 23 42 42 H 1.09002 * 117.52121 * 107.47939 * 25 24 23 43 43 H 1.07998 * 120.43595 * 180.02562 * 26 22 21 44 44 H 1.08994 * 109.31269 * 101.01093 * 27 12 11 45 45 H 1.09002 * 109.30542 * 220.43418 * 27 12 11 46 46 H 1.08998 * 109.77666 * 237.78973 * 28 9 7 47 47 H 1.09005 * 109.77917 * 358.59358 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0608 -1.2192 -0.2491 9 7 1.3628 -2.3664 0.3175 10 6 0.1444 -2.3652 1.1400 11 6 0.2245 -3.4823 2.1426 12 6 1.1202 -4.4163 2.1059 13 6 1.0636 -5.4829 3.1688 14 7 0.3199 -6.6387 2.6617 15 6 0.1412 -7.7214 3.4443 16 8 0.5967 -7.7387 4.5707 17 6 -0.6114 -8.8901 2.9316 18 6 -1.1431 -8.8900 1.6407 19 6 -1.8411 -10.0071 1.2013 20 8 -2.3631 -10.0218 -0.0511 21 7 -2.0027 -11.0563 1.9890 22 6 -1.5147 -11.0918 3.2137 23 6 -1.7324 -12.3166 4.0644 24 6 -0.8492 -12.4829 5.3025 25 6 -0.6257 -13.3729 4.0783 26 6 -0.8084 -10.0234 3.7282 27 6 2.2138 -4.5080 1.0837 28 6 1.8589 -3.6722 -0.1513 29 1 -0.4851 0.8401 -0.0004 30 1 -0.7266 -2.5110 0.5010 31 1 0.0585 -1.4124 1.6622 32 1 -0.5056 -3.5070 2.9380 33 1 0.5634 -5.0885 4.0533 34 1 2.0765 -5.7891 3.4306 35 1 -0.0440 -6.6249 1.7626 36 1 -1.0129 -8.0350 0.9938 37 1 -3.2655 -9.6784 -0.1051 38 1 -2.7627 -12.6662 4.1301 39 1 -0.1103 -11.7066 5.5016 40 1 -1.2984 -12.9418 6.1832 41 1 -0.9278 -14.4175 4.1536 42 1 0.2598 -13.1822 3.4719 43 1 -0.4122 -10.0621 4.7321 44 1 3.1440 -4.1408 1.5170 45 1 2.3436 -5.5489 0.7872 46 1 1.0846 -4.1743 -0.7312 47 1 2.7475 -3.5300 -0.7664 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000767607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:59 Heat of formation + Delta-G solvation = 29.970216 kcal Electronic energy + Delta-G solvation = -28742.579555 eV Core-core repulsion = 24699.655339 eV Total energy + Delta-G solvation = -4042.924217 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.25424 -39.62881 -38.23760 -37.84495 -36.52820 -35.13744 -33.44051 -32.66391 -30.94830 -30.39303 -29.78769 -27.27576 -25.40641 -24.85005 -23.71940 -22.84437 -22.62875 -22.02624 -21.17420 -20.43712 -19.04211 -17.84984 -17.61221 -17.45268 -16.22668 -16.16781 -15.92353 -15.60791 -15.51840 -15.36646 -14.96884 -14.84634 -14.21115 -13.91112 -13.79093 -13.49660 -13.48078 -13.03526 -12.74711 -12.37043 -12.34040 -12.21521 -12.12737 -11.81165 -11.64099 -11.45758 -11.12443 -10.97399 -10.87789 -10.77359 -10.58279 -10.41848 -10.36761 -10.23079 -9.89017 -9.80069 -9.66630 -9.20187 -9.16620 -8.74754 -8.15880 -6.81178 -5.85795 -3.24539 0.30258 0.52740 2.41229 2.51600 2.98440 3.20879 3.34318 3.35508 3.41515 3.43806 3.51444 3.90584 4.30660 4.44022 4.44599 4.47142 4.56664 4.64240 4.66208 4.94106 5.01958 5.15682 5.22536 5.25374 5.32551 5.33320 5.42035 5.50087 5.61753 5.68859 5.70800 5.72685 5.83416 5.97943 5.99041 6.07872 6.24477 6.26061 6.42787 6.65742 6.79439 7.06743 7.07501 7.16577 7.22224 7.34974 7.47825 7.65405 7.75152 7.95004 8.31798 9.13347 9.76004 10.33590 11.24762 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.022966 B = 0.002005 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.888677 B =13959.598021 C =14615.163406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.001 4.001 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.246 4.246 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.193 3.807 11 C -0.121 4.121 12 C -0.169 4.169 13 C 0.157 3.843 14 N -0.709 5.709 15 C 0.554 3.446 16 O -0.531 6.531 17 C -0.064 4.064 18 C -0.159 4.159 19 C 0.316 3.684 20 O -0.478 6.478 21 N -0.484 5.484 22 C 0.181 3.819 23 C -0.112 4.112 24 C -0.171 4.171 25 C -0.160 4.160 26 C -0.125 4.125 27 C -0.090 4.090 28 C 0.144 3.856 29 H 0.254 0.746 30 H 0.042 0.958 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.402 0.598 36 H 0.148 0.852 37 H 0.404 0.596 38 H 0.126 0.874 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.154 0.846 44 H 0.065 0.935 45 H 0.052 0.948 46 H 0.024 0.976 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.121 -23.149 7.052 24.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.199 4.199 3 Si 0.735 3.265 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.376 4.376 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.068 3.932 11 C -0.142 4.142 12 C -0.170 4.170 13 C 0.035 3.965 14 N -0.360 5.360 15 C 0.340 3.660 16 O -0.409 6.409 17 C -0.075 4.075 18 C -0.181 4.181 19 C 0.137 3.863 20 O -0.285 6.285 21 N -0.204 5.204 22 C 0.043 3.957 23 C -0.131 4.131 24 C -0.209 4.209 25 C -0.198 4.198 26 C -0.145 4.145 27 C -0.130 4.130 28 C 0.017 3.983 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.238 0.762 36 H 0.166 0.834 37 H 0.262 0.738 38 H 0.144 0.856 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.115 0.885 43 H 0.171 0.829 44 H 0.084 0.916 45 H 0.071 0.929 46 H 0.042 0.958 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.797 -23.849 7.314 25.402 hybrid contribution 0.085 1.833 -0.180 1.844 sum -4.712 -22.016 7.133 23.618 Atomic orbital electron populations 1.70000 1.05186 1.25583 1.54730 1.24995 0.95415 0.98348 1.01167 0.86252 0.79081 0.83493 0.77704 1.21405 1.21550 1.20516 1.19170 0.92241 0.84321 1.41850 0.91345 1.44125 1.29200 1.01219 1.57267 1.19775 0.88867 0.94792 0.89759 1.23326 0.95673 0.96583 0.98570 1.20485 1.00174 0.97248 0.99106 1.20552 0.96202 0.84031 0.95759 1.46145 1.55825 1.15988 1.18037 1.18099 0.80170 0.82396 0.85376 1.90782 1.49859 1.81488 1.18730 1.20326 0.97906 0.95358 0.93912 1.22368 1.00443 0.99525 0.95767 1.18907 0.94379 0.88116 0.84918 1.84817 1.35063 1.86977 1.21618 1.66699 1.21301 1.27807 1.04571 1.20003 0.92804 0.93924 0.88979 1.20787 0.98221 0.95025 0.99030 1.23165 1.02400 1.03122 0.92166 1.22998 0.99426 0.96248 1.01078 1.22095 0.98367 0.92144 1.01932 1.20797 0.96579 0.99054 0.96529 1.20993 0.97406 0.87184 0.92726 0.93569 0.94006 0.88782 0.88711 0.91222 0.91154 0.76186 0.83400 0.73815 0.85640 0.87878 0.87659 0.87885 0.88541 0.82874 0.91607 0.92920 0.95849 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.58 11.08 55.49 0.61 -24.96 16 2 C 0.00 -0.04 5.01 -17.43 -0.09 -0.12 16 3 Si 0.90 21.32 29.58 -169.99 -5.03 16.30 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.25 -6.58 9.71 -15.06 -0.15 -6.73 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 9 N -0.59 -14.33 3.01 -173.56 -0.52 -14.85 16 10 C 0.19 4.37 5.23 -5.10 -0.03 4.34 16 11 C -0.12 -2.16 9.47 -35.78 -0.34 -2.50 16 12 C -0.17 -2.73 5.22 -100.99 -0.53 -3.25 16 13 C 0.16 2.19 5.66 -5.20 -0.03 2.16 16 14 N -0.71 -8.68 5.51 -62.33 -0.34 -9.03 16 15 C 0.55 7.24 7.80 -12.18 -0.10 7.15 16 16 O -0.53 -8.52 16.44 5.35 0.09 -8.43 16 17 C -0.06 -0.71 5.91 -104.68 -0.62 -1.33 16 18 C -0.16 -1.56 9.55 -38.84 -0.37 -1.93 16 19 C 0.32 3.29 7.74 -17.17 -0.13 3.15 16 20 O -0.48 -4.26 13.56 -18.78 -0.25 -4.52 16 21 N -0.48 -5.45 10.27 -9.59 -0.10 -5.55 16 22 C 0.18 1.82 6.45 -82.65 -0.53 1.29 16 23 C -0.11 -0.86 6.21 -91.77 -0.57 -1.43 16 24 C -0.17 -1.04 9.79 -26.74 -0.26 -1.31 16 25 C -0.16 -1.05 10.23 -26.73 -0.27 -1.32 16 26 C -0.12 -1.30 8.92 -39.03 -0.35 -1.65 16 27 C -0.09 -1.49 5.95 -28.09 -0.17 -1.66 16 28 C 0.14 2.83 6.59 -3.44 -0.02 2.81 16 29 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.09 2.40 6.41 -51.93 -0.33 2.06 16 32 H 0.09 1.51 7.73 -52.49 -0.41 1.11 16 33 H 0.07 1.00 7.78 -51.93 -0.40 0.60 16 34 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 35 H 0.40 4.28 6.60 -40.82 -0.27 4.01 16 36 H 0.15 1.18 6.53 -52.49 -0.34 0.84 16 37 H 0.40 1.59 9.06 45.56 0.41 2.00 16 38 H 0.13 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.10 0.66 6.39 -51.93 -0.33 0.33 16 40 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.15 1.50 5.92 -52.49 -0.31 1.19 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 1.12 7.96 -51.93 -0.41 0.71 16 LS Contribution 390.02 15.07 5.88 5.88 Total: -1.00 -32.55 390.02 -9.97 -42.52 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.75 Total: 4.99 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -4.55 Total: -2.34 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: -0.35 Total: -54.39 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.17 Total: -12.95 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.55 -9.97 -42.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000767607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.490 kcal (2) G-P(sol) polarization free energy of solvation -32.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds