Wall clock time and date at job start Wed Apr 1 2020 02:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99922 * 2 1 4 4 H 1.48499 * 109.46667 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47146 * 299.99655 * 3 2 1 6 6 H 1.48494 * 109.47292 * 59.99894 * 3 2 1 7 7 C 1.38810 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99824 * 162.83193 * 7 2 1 9 9 N 1.36934 * 120.00379 * 342.84276 * 7 2 1 10 10 C 1.46856 * 120.38083 * 330.68397 * 9 7 2 11 11 C 1.53350 * 108.81061 * 236.88402 * 10 9 7 12 12 C 1.53180 * 108.77041 * 308.68314 * 11 10 9 13 13 C 1.52835 * 117.65788 * 269.97521 * 12 11 10 14 14 C 1.52820 * 117.71233 * 201.11717 * 12 11 10 15 15 H 1.09001 * 117.52134 * 215.09476 * 14 12 11 16 16 N 1.46496 * 117.50229 * 0.13882 * 14 12 11 17 17 C 1.34782 * 120.00029 * 204.97566 * 16 14 12 18 18 O 1.21548 * 119.99603 * 0.02562 * 17 16 14 19 19 C 1.47860 * 119.99842 * 180.02562 * 17 16 14 20 20 C 1.39705 * 120.07433 * 359.71983 * 19 17 16 21 21 C 1.38053 * 120.14380 * 180.29963 * 20 19 17 22 22 C 1.38101 * 120.29983 * 359.95613 * 21 20 19 23 23 C 1.39670 * 120.14071 * 0.04812 * 22 21 20 24 24 C 1.47862 * 120.07055 * 179.97438 * 23 22 21 25 25 N 1.34770 * 120.00216 * 0.02562 * 24 23 22 26 26 O 1.21552 * 119.99795 * 180.02562 * 24 23 22 27 27 C 1.39302 * 120.06953 * 180.02562 * 19 17 16 28 28 C 1.53187 * 115.07654 * 55.45154 * 12 11 10 29 29 C 1.46837 * 120.38723 * 150.66570 * 9 7 2 30 30 H 0.97005 * 120.00042 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.57927 * 117.08551 * 10 9 7 32 32 H 1.09001 * 109.68820 * 356.75492 * 10 9 7 33 33 H 1.09004 * 109.58324 * 188.89612 * 11 10 9 34 34 H 1.09001 * 109.58353 * 68.47292 * 11 10 9 35 35 H 1.08999 * 117.50434 * 144.81567 * 13 12 11 36 36 H 1.09000 * 117.53098 * 359.74751 * 13 12 11 37 37 H 0.97001 * 120.00012 * 24.97261 * 16 14 12 38 38 H 1.07995 * 119.92749 * 0.25974 * 20 19 17 39 39 H 1.07999 * 119.85163 * 179.97438 * 21 20 19 40 40 H 1.08003 * 119.93315 * 180.02562 * 22 21 20 41 41 H 0.96996 * 120.00295 * 0.02562 * 25 24 23 42 42 H 0.97004 * 120.00355 * 180.02562 * 25 24 23 43 43 H 1.07992 * 120.14721 * 359.69248 * 27 19 17 44 44 H 1.08997 * 109.58854 * 64.33933 * 28 12 11 45 45 H 1.08994 * 109.58811 * 184.77266 * 28 12 11 46 46 H 1.09002 * 109.58190 * 242.92068 * 29 9 7 47 47 H 1.08997 * 109.58089 * 3.31768 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0542 -1.2231 -0.2755 9 7 1.3713 -2.3615 0.3509 10 6 0.2478 -2.3339 1.2963 11 6 0.5712 -3.2592 2.4756 12 6 0.9910 -4.6269 1.9284 13 6 -0.1045 -5.6696 1.7083 14 6 0.8848 -5.8300 2.8647 15 1 1.6435 -6.6074 2.7740 16 7 0.3852 -5.5899 4.2207 17 6 0.7211 -6.4285 5.2210 18 8 1.4389 -7.3837 4.9980 19 6 0.2163 -6.1865 6.5895 20 6 -0.6041 -5.0858 6.8486 21 6 -1.0711 -4.8549 8.1271 22 6 -0.7322 -5.7095 9.1576 23 6 0.0873 -6.8136 8.9123 24 6 0.4497 -7.7273 10.0169 25 7 -0.0112 -7.4955 11.2620 26 8 1.1633 -8.6875 9.8020 27 6 0.5629 -7.0520 7.6246 28 6 2.1560 -4.5986 0.9341 29 6 1.8012 -3.6466 -0.2146 30 1 -0.4850 0.8401 -0.0004 31 1 -0.6576 -2.6802 0.7978 32 1 0.0986 -1.3172 1.6597 33 1 -0.3122 -3.3725 3.1041 34 1 1.3864 -2.8338 3.0609 35 1 0.0036 -6.3412 0.8566 36 1 -1.1272 -5.3860 1.9566 37 1 -0.1873 -4.8274 4.3987 38 1 -0.8729 -4.4136 6.0472 39 1 -1.7047 -4.0023 8.3222 40 1 -1.1012 -5.5235 10.1555 41 1 -0.5810 -6.7294 11.4334 42 1 0.2268 -8.0946 11.9867 43 1 1.1967 -7.9043 7.4295 44 1 3.0566 -4.2456 1.4364 45 1 2.3241 -5.6007 0.5396 46 1 0.9921 -4.0742 -0.8067 47 1 2.6766 -3.4934 -0.8457 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016695009.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:59 Heat of formation + Delta-G solvation = -0.271837 kcal Electronic energy + Delta-G solvation = -29050.442079 eV Core-core repulsion = 25006.206469 eV Total energy + Delta-G solvation = -4044.235611 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.79419 -39.89727 -38.75301 -37.84915 -35.52700 -34.33150 -33.39910 -31.81576 -31.48883 -30.99593 -30.14552 -28.25052 -24.79385 -24.45268 -24.29628 -22.50650 -21.94575 -21.49356 -20.79575 -20.19357 -18.93976 -18.23584 -17.47848 -16.92366 -16.61120 -16.51716 -15.95281 -15.25756 -15.02453 -14.90535 -14.82887 -14.76007 -14.18929 -14.11001 -14.00902 -13.59082 -13.39766 -13.07712 -12.86754 -12.64041 -12.50418 -12.26340 -11.77694 -11.74639 -11.53270 -11.40426 -11.00467 -10.76304 -10.54057 -10.51977 -10.30666 -10.18427 -10.12224 -9.96417 -9.73626 -9.61840 -9.51923 -9.47769 -9.39192 -8.51333 -8.47467 -6.65958 -5.81898 -3.25268 0.20190 0.66468 2.20628 2.84203 2.85944 3.10395 3.34261 3.42835 3.45319 3.52118 4.16647 4.21082 4.26069 4.35832 4.47384 4.62001 4.68622 4.92900 4.95682 5.07678 5.10989 5.16509 5.36678 5.45349 5.48160 5.60728 5.71271 5.77497 5.82453 5.87674 6.02923 6.06936 6.08796 6.22624 6.25581 6.33445 6.41614 6.53166 6.54325 6.61560 6.67929 6.81041 6.82965 6.98159 7.29869 7.41999 7.61291 7.77830 7.78843 8.10059 8.43993 9.19355 9.82681 10.39473 11.25902 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.016723 B = 0.002208 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.972859 B =12680.626188 C =13664.754008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.590 5.590 10 C 0.174 3.826 11 C -0.105 4.105 12 C -0.096 4.096 13 C -0.181 4.181 14 C 0.068 3.932 15 H 0.133 0.867 16 N -0.688 5.688 17 C 0.559 3.441 18 O -0.534 6.534 19 C -0.136 4.136 20 C -0.058 4.058 21 C -0.131 4.131 22 C -0.064 4.064 23 C -0.150 4.150 24 C 0.565 3.435 25 N -0.851 5.851 26 O -0.533 6.533 27 C 0.000 4.000 28 C -0.098 4.098 29 C 0.149 3.851 30 H 0.253 0.747 31 H 0.018 0.982 32 H 0.090 0.910 33 H 0.042 0.958 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.401 0.599 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.131 0.869 41 H 0.401 0.599 42 H 0.406 0.594 43 H 0.151 0.849 44 H 0.064 0.936 45 H 0.054 0.946 46 H 0.020 0.980 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.864 -10.530 19.983 23.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.144 4.144 12 C -0.097 4.097 13 C -0.220 4.220 14 C -0.037 4.037 15 H 0.151 0.849 16 N -0.338 5.338 17 C 0.346 3.654 18 O -0.411 6.411 19 C -0.139 4.139 20 C -0.077 4.077 21 C -0.149 4.149 22 C -0.083 4.083 23 C -0.153 4.153 24 C 0.351 3.649 25 N -0.416 5.416 26 O -0.410 6.410 27 C -0.020 4.020 28 C -0.138 4.138 29 C 0.023 3.977 30 H 0.063 0.937 31 H 0.036 0.964 32 H 0.108 0.892 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.111 0.889 37 H 0.238 0.762 38 H 0.152 0.848 39 H 0.157 0.843 40 H 0.149 0.851 41 H 0.230 0.770 42 H 0.237 0.763 43 H 0.169 0.831 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.038 0.962 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.975 -11.633 19.476 23.225 hybrid contribution -0.289 1.496 0.526 1.612 sum -5.263 -10.137 20.003 23.034 Atomic orbital electron populations 1.70038 1.05259 1.25351 1.54043 1.25060 0.95276 0.98441 1.00908 0.86249 0.79469 0.83976 0.77254 1.20235 1.21742 1.21584 1.19244 0.92652 0.84899 1.41264 0.91725 1.43971 1.37433 1.01770 1.47995 1.20743 0.88871 0.98451 0.87188 1.21821 0.98987 0.93713 0.99897 1.21964 0.98237 0.91049 0.98472 1.23536 0.95899 1.03053 0.99474 1.21920 1.01146 1.02627 0.78057 0.84910 1.45303 1.51474 1.29156 1.07865 1.18108 0.80517 0.82549 0.84214 1.90785 1.37104 1.29534 1.83711 1.19974 1.01962 0.97819 0.94149 1.21627 0.93413 0.94982 0.97674 1.21083 1.01216 1.00290 0.92293 1.21475 0.94591 0.92704 0.99534 1.19820 1.03243 0.97943 0.94282 1.18204 0.79327 0.84452 0.82950 1.43728 1.54771 1.32871 1.10212 1.90861 1.36860 1.29810 1.83460 1.21398 0.93712 0.97190 0.89687 1.21699 0.95845 0.99371 0.96880 1.20863 0.97487 0.86879 0.92513 0.93724 0.96392 0.89198 0.93947 0.91985 0.88337 0.88886 0.76248 0.84791 0.84324 0.85115 0.76986 0.76261 0.83136 0.91772 0.92775 0.96222 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.46 11.21 55.49 0.62 -24.84 16 2 C 0.00 0.04 4.90 -17.43 -0.09 -0.04 16 3 Si 0.90 21.25 29.59 -169.99 -5.03 16.22 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 7 C -0.25 -6.72 9.54 -15.06 -0.14 -6.87 16 8 H 0.07 1.72 7.89 -52.48 -0.41 1.31 16 9 N -0.59 -14.28 2.93 -172.25 -0.51 -14.78 16 10 C 0.17 3.91 5.39 -3.67 -0.02 3.89 16 11 C -0.10 -1.83 5.37 -26.46 -0.14 -1.97 16 12 C -0.10 -1.53 1.94 -154.50 -0.30 -1.83 16 13 C -0.18 -2.55 9.86 -26.80 -0.26 -2.81 16 14 C 0.07 0.98 6.14 -68.01 -0.42 0.56 16 15 H 0.13 2.05 7.40 -51.93 -0.38 1.66 16 16 N -0.69 -8.85 5.30 -54.82 -0.29 -9.14 16 17 C 0.56 7.83 7.77 -12.32 -0.10 7.73 16 18 O -0.53 -9.38 15.91 5.32 0.08 -9.29 16 19 C -0.14 -1.52 5.87 -105.02 -0.62 -2.14 16 20 C -0.06 -0.47 9.54 -39.10 -0.37 -0.85 16 21 C -0.13 -0.80 10.02 -39.70 -0.40 -1.20 16 22 C -0.06 -0.38 9.54 -39.10 -0.37 -0.75 16 23 C -0.15 -1.36 5.87 -105.02 -0.62 -1.98 16 24 C 0.56 5.41 8.05 -12.32 -0.10 5.31 16 25 N -0.85 -4.03 8.82 30.53 0.27 -3.76 16 26 O -0.53 -7.51 17.18 5.32 0.09 -7.42 16 27 C 0.00 0.00 9.14 -38.78 -0.35 -0.36 16 28 C -0.10 -1.68 5.83 -26.45 -0.15 -1.83 16 29 C 0.15 3.04 6.51 -3.67 -0.02 3.02 16 30 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 2.28 5.95 -51.93 -0.31 1.97 16 33 H 0.04 0.62 6.75 -51.93 -0.35 0.27 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.40 4.32 5.14 -40.82 -0.21 4.11 16 38 H 0.13 0.87 6.39 -52.49 -0.34 0.54 16 39 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 40 H 0.13 0.28 6.39 -52.48 -0.34 -0.06 16 41 H 0.40 0.63 6.85 -40.82 -0.28 0.35 16 42 H 0.41 1.47 8.93 -40.82 -0.36 1.10 16 43 H 0.15 2.04 7.23 -52.49 -0.38 1.66 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 1.12 7.92 -51.93 -0.41 0.71 16 LS Contribution 383.69 15.07 5.78 5.78 Total: -1.00 -34.84 383.69 -9.74 -44.58 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -6.29 Total: 4.77 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -4.48 Total: -2.13 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: 0.10 Total: -52.51 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: 0.18 Total: -16.71 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.84 -9.74 -44.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016695009.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.309 kcal (2) G-P(sol) polarization free energy of solvation -34.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds