Wall clock time and date at job start Wed Apr 1 2020 02:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99922 * 2 1 4 4 H 1.48499 * 109.46667 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47146 * 299.99655 * 3 2 1 6 6 H 1.48494 * 109.47292 * 59.99894 * 3 2 1 7 7 C 1.38810 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99824 * 162.83193 * 7 2 1 9 9 N 1.36934 * 120.00379 * 342.84276 * 7 2 1 10 10 C 1.46856 * 120.38083 * 330.68397 * 9 7 2 11 11 C 1.53350 * 108.81061 * 236.88402 * 10 9 7 12 12 C 1.53180 * 108.77041 * 308.68314 * 11 10 9 13 13 C 1.52835 * 117.65788 * 269.97521 * 12 11 10 14 14 C 1.52820 * 117.71233 * 201.11717 * 12 11 10 15 15 H 1.09001 * 117.52134 * 215.09476 * 14 12 11 16 16 N 1.46496 * 117.50229 * 0.13882 * 14 12 11 17 17 C 1.34782 * 120.00029 * 204.97566 * 16 14 12 18 18 O 1.21548 * 119.99603 * 0.02562 * 17 16 14 19 19 C 1.47860 * 119.99842 * 180.02562 * 17 16 14 20 20 C 1.39705 * 120.07433 * 359.71983 * 19 17 16 21 21 C 1.38053 * 120.14380 * 180.29963 * 20 19 17 22 22 C 1.38101 * 120.29983 * 359.95613 * 21 20 19 23 23 C 1.39670 * 120.14071 * 0.04812 * 22 21 20 24 24 C 1.47862 * 120.07055 * 179.97438 * 23 22 21 25 25 N 1.34770 * 120.00216 * 0.02562 * 24 23 22 26 26 O 1.21552 * 119.99795 * 180.02562 * 24 23 22 27 27 C 1.39302 * 120.06953 * 180.02562 * 19 17 16 28 28 C 1.53187 * 115.07654 * 55.45154 * 12 11 10 29 29 C 1.46837 * 120.38723 * 150.66570 * 9 7 2 30 30 H 0.97005 * 120.00042 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.57927 * 117.08551 * 10 9 7 32 32 H 1.09001 * 109.68820 * 356.75492 * 10 9 7 33 33 H 1.09004 * 109.58324 * 188.89612 * 11 10 9 34 34 H 1.09001 * 109.58353 * 68.47292 * 11 10 9 35 35 H 1.08999 * 117.50434 * 144.81567 * 13 12 11 36 36 H 1.09000 * 117.53098 * 359.74751 * 13 12 11 37 37 H 0.97001 * 120.00012 * 24.97261 * 16 14 12 38 38 H 1.07995 * 119.92749 * 0.25974 * 20 19 17 39 39 H 1.07999 * 119.85163 * 179.97438 * 21 20 19 40 40 H 1.08003 * 119.93315 * 180.02562 * 22 21 20 41 41 H 0.96996 * 120.00295 * 0.02562 * 25 24 23 42 42 H 0.97004 * 120.00355 * 180.02562 * 25 24 23 43 43 H 1.07992 * 120.14721 * 359.69248 * 27 19 17 44 44 H 1.08997 * 109.58854 * 64.33933 * 28 12 11 45 45 H 1.08994 * 109.58811 * 184.77266 * 28 12 11 46 46 H 1.09002 * 109.58190 * 242.92068 * 29 9 7 47 47 H 1.08997 * 109.58089 * 3.31768 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0542 -1.2231 -0.2755 9 7 1.3713 -2.3615 0.3509 10 6 0.2478 -2.3339 1.2963 11 6 0.5712 -3.2592 2.4756 12 6 0.9910 -4.6269 1.9284 13 6 -0.1045 -5.6696 1.7083 14 6 0.8848 -5.8300 2.8647 15 1 1.6435 -6.6074 2.7740 16 7 0.3852 -5.5899 4.2207 17 6 0.7211 -6.4285 5.2210 18 8 1.4389 -7.3837 4.9980 19 6 0.2163 -6.1865 6.5895 20 6 -0.6041 -5.0858 6.8486 21 6 -1.0711 -4.8549 8.1271 22 6 -0.7322 -5.7095 9.1576 23 6 0.0873 -6.8136 8.9123 24 6 0.4497 -7.7273 10.0169 25 7 -0.0112 -7.4955 11.2620 26 8 1.1633 -8.6875 9.8020 27 6 0.5629 -7.0520 7.6246 28 6 2.1560 -4.5986 0.9341 29 6 1.8012 -3.6466 -0.2146 30 1 -0.4850 0.8401 -0.0004 31 1 -0.6576 -2.6802 0.7978 32 1 0.0986 -1.3172 1.6597 33 1 -0.3122 -3.3725 3.1041 34 1 1.3864 -2.8338 3.0609 35 1 0.0036 -6.3412 0.8566 36 1 -1.1272 -5.3860 1.9566 37 1 -0.1873 -4.8274 4.3987 38 1 -0.8729 -4.4136 6.0472 39 1 -1.7047 -4.0023 8.3222 40 1 -1.1012 -5.5235 10.1555 41 1 -0.5810 -6.7294 11.4334 42 1 0.2268 -8.0946 11.9867 43 1 1.1967 -7.9043 7.4295 44 1 3.0566 -4.2456 1.4364 45 1 2.3241 -5.6007 0.5396 46 1 0.9921 -4.0742 -0.8067 47 1 2.6766 -3.4934 -0.8457 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016695009.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:57 Heat of formation + Delta-G solvation = -25.308743 kcal Electronic energy + Delta-G solvation = -29051.527761 eV Core-core repulsion = 25006.206469 eV Total energy + Delta-G solvation = -4045.321292 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.65307 -40.86936 -39.89846 -38.77030 -37.13512 -35.03673 -34.66601 -33.40314 -32.14594 -31.91697 -31.73988 -29.86951 -26.24437 -25.52351 -25.17126 -24.04678 -23.10629 -22.44002 -22.10502 -21.16382 -19.87941 -19.58585 -18.45110 -18.00566 -17.76612 -17.31499 -16.98145 -16.77557 -16.15915 -15.88863 -15.81949 -15.72735 -15.45105 -15.35502 -15.03635 -14.82093 -14.78514 -14.61230 -14.16406 -13.77243 -13.58634 -13.32151 -13.08460 -13.00667 -12.89729 -12.61003 -12.54605 -12.48843 -12.28519 -11.97421 -11.77658 -11.38437 -11.36075 -11.26452 -11.15459 -10.79493 -10.70322 -10.48487 -10.21214 -10.12347 -9.68581 -8.59749 -7.85044 -5.31317 -0.44789 -0.06187 1.46156 1.46870 1.49107 1.59079 1.90043 1.96721 2.46261 2.52639 2.76890 2.97680 3.29577 3.47830 3.64629 3.70690 3.78301 3.81597 3.86092 3.98351 4.02500 4.05855 4.13263 4.31563 4.50681 4.53756 4.63471 4.71815 4.85998 4.86681 4.87865 4.93862 5.01485 5.09059 5.11663 5.15555 5.22411 5.22980 5.30740 5.37927 5.44253 5.55287 5.67269 5.67935 5.81169 5.83279 6.37005 6.40358 6.43491 7.06559 7.18791 7.23894 7.90321 8.41194 9.19936 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.016723 B = 0.002208 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.972859 B =12680.626188 C =13664.754008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.047 4.047 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.293 1.293 6 H -0.287 1.287 7 C -0.262 4.262 8 H 0.060 0.940 9 N -0.609 5.609 10 C 0.180 3.820 11 C -0.089 4.089 12 C -0.113 4.113 13 C -0.166 4.166 14 C 0.080 3.920 15 H 0.123 0.877 16 N -0.679 5.679 17 C 0.557 3.443 18 O -0.581 6.581 19 C -0.156 4.156 20 C -0.055 4.055 21 C -0.121 4.121 22 C -0.041 4.041 23 C -0.160 4.160 24 C 0.560 3.440 25 N -0.823 5.823 26 O -0.592 6.592 27 C -0.025 4.025 28 C -0.089 4.089 29 C 0.147 3.853 30 H 0.250 0.750 31 H 0.001 0.999 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.412 0.588 38 H 0.153 0.847 39 H 0.180 0.820 40 H 0.179 0.821 41 H 0.420 0.580 42 H 0.414 0.586 43 H 0.114 0.886 44 H 0.053 0.947 45 H 0.079 0.921 46 H 0.019 0.981 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.596 -9.506 22.417 25.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.243 4.243 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.220 1.220 6 H -0.214 1.214 7 C -0.392 4.392 8 H 0.078 0.922 9 N -0.332 5.332 10 C 0.054 3.946 11 C -0.128 4.128 12 C -0.114 4.114 13 C -0.205 4.205 14 C -0.026 4.026 15 H 0.141 0.859 16 N -0.329 5.329 17 C 0.346 3.654 18 O -0.462 6.462 19 C -0.159 4.159 20 C -0.073 4.073 21 C -0.138 4.138 22 C -0.060 4.060 23 C -0.163 4.163 24 C 0.346 3.654 25 N -0.388 5.388 26 O -0.474 6.474 27 C -0.045 4.045 28 C -0.128 4.128 29 C 0.021 3.979 30 H 0.060 0.940 31 H 0.019 0.981 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.251 0.749 38 H 0.170 0.830 39 H 0.197 0.803 40 H 0.196 0.804 41 H 0.253 0.747 42 H 0.247 0.753 43 H 0.132 0.868 44 H 0.071 0.929 45 H 0.098 0.902 46 H 0.037 0.963 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.745 -10.580 21.958 25.289 hybrid contribution 0.201 1.179 -0.185 1.211 sum -6.543 -9.400 21.772 24.601 Atomic orbital electron populations 1.70169 1.06444 1.25743 1.55311 1.25739 0.96038 1.01230 1.01285 0.85285 0.78542 0.80206 0.76871 1.19576 1.22015 1.21354 1.19501 0.92735 0.86267 1.40734 0.92203 1.44241 1.37673 1.02329 1.48925 1.20569 0.87913 0.97774 0.88365 1.21561 0.99972 0.93302 0.97978 1.21825 0.99143 0.90901 0.99566 1.23628 0.95888 1.01516 0.99437 1.21720 1.01192 1.00824 0.78888 0.85909 1.45200 1.51254 1.29375 1.07106 1.18607 0.79639 0.81760 0.85397 1.90755 1.39311 1.31529 1.84562 1.19752 1.04204 0.99712 0.92239 1.21900 0.92177 0.93722 0.99542 1.21577 1.00338 1.00906 0.90977 1.21976 0.91900 0.90298 1.01818 1.19856 1.04236 0.99258 0.92957 1.18409 0.78846 0.83806 0.84291 1.43504 1.53435 1.33187 1.08687 1.90836 1.39750 1.32283 1.84484 1.21223 0.94786 0.96941 0.91554 1.21540 0.95858 0.99584 0.95814 1.20968 0.97087 0.86102 0.93748 0.94043 0.98099 0.92417 0.90697 0.93078 0.87234 0.87698 0.74855 0.82965 0.80306 0.80410 0.74704 0.75311 0.86823 0.92856 0.90220 0.96335 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.43 11.21 21.65 0.24 -53.18 16 2 C -0.05 -2.59 4.90 84.86 0.42 -2.18 16 3 Si 0.96 44.13 29.59 68.60 2.03 46.15 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 6 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 7 C -0.26 -14.26 9.54 84.03 0.80 -13.45 16 8 H 0.06 3.24 7.89 -2.91 -0.02 3.21 16 9 N -0.61 -29.86 2.93 -698.88 -2.05 -31.91 16 10 C 0.18 8.15 5.39 86.43 0.47 8.61 16 11 C -0.09 -3.02 5.37 30.77 0.17 -2.85 16 12 C -0.11 -3.47 1.94 -52.17 -0.10 -3.57 16 13 C -0.17 -4.33 9.86 30.55 0.30 -4.03 16 14 C 0.08 2.20 6.14 44.94 0.28 2.48 16 15 H 0.12 3.73 7.40 -2.39 -0.02 3.72 16 16 N -0.68 -16.61 5.30 -445.64 -2.36 -18.97 16 17 C 0.56 15.75 7.77 86.79 0.67 16.43 16 18 O -0.58 -21.46 15.91 -3.87 -0.06 -21.52 16 19 C -0.16 -3.44 5.87 -20.12 -0.12 -3.56 16 20 C -0.05 -0.73 9.54 22.58 0.22 -0.51 16 21 C -0.12 -0.88 10.02 22.19 0.22 -0.66 16 22 C -0.04 -0.31 9.54 22.58 0.22 -0.09 16 23 C -0.16 -2.71 5.87 -20.12 -0.12 -2.82 16 24 C 0.56 10.39 8.05 86.79 0.70 11.09 16 25 N -0.82 -5.66 8.82 -175.60 -1.55 -7.21 16 26 O -0.59 -17.60 17.18 -3.88 -0.07 -17.67 16 27 C -0.02 -0.60 9.14 22.79 0.21 -0.39 16 28 C -0.09 -2.96 5.83 30.78 0.18 -2.78 16 29 C 0.15 5.99 6.51 86.43 0.56 6.55 16 30 H 0.25 13.85 8.31 -92.70 -0.77 13.08 16 31 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.06 2.99 5.95 -2.39 -0.01 2.97 16 33 H 0.07 2.01 6.75 -2.39 -0.02 2.00 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.41 7.88 5.14 -92.71 -0.48 7.41 16 38 H 0.15 1.40 6.39 -2.91 -0.02 1.38 16 39 H 0.18 0.00 8.06 -2.91 -0.02 -0.02 16 40 H 0.18 -0.42 6.39 -2.91 -0.02 -0.44 16 41 H 0.42 -0.52 6.85 -92.71 -0.64 -1.16 16 42 H 0.41 2.08 8.93 -92.71 -0.83 1.25 16 43 H 0.11 3.52 7.23 -2.91 -0.02 3.50 16 44 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.08 2.24 8.10 -2.39 -0.02 2.22 16 46 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.05 2.07 7.92 -2.39 -0.02 2.05 16 Total: -1.00 -81.98 383.69 0.35 -81.62 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -0.90 Total: 14.43 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 5.07 Total: 8.26 kcal Atomic # 7 Polarization: -105.57 SS G_CDS: -5.72 Total: -111.28 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -0.13 Total: -39.19 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -81.98 0.35 -81.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016695009.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.316 kcal (2) G-P(sol) polarization free energy of solvation -81.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds