Wall clock time and date at job start Wed Apr 1 2020 01:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99891 * 2 1 4 4 H 1.48502 * 109.46938 * 274.99521 * 3 2 1 5 5 H 1.48506 * 109.47076 * 34.99055 * 3 2 1 6 6 H 1.48495 * 109.47389 * 154.99513 * 3 2 1 7 7 C 1.38815 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00062 * 174.66940 * 7 2 1 9 9 N 1.36936 * 120.00140 * 354.67034 * 7 2 1 10 10 C 1.47875 * 126.94187 * 5.02649 * 9 7 2 11 11 C 1.56021 * 105.10051 * 181.98313 * 10 9 7 12 12 H 1.09001 * 116.24441 * 159.68615 * 11 10 9 13 13 C 1.57079 * 99.60777 * 32.80512 * 11 10 9 14 14 C 1.49287 * 126.94506 * 185.00076 * 9 7 2 15 15 H 1.09000 * 116.15257 * 15.86556 * 14 9 7 16 16 C 1.55992 * 104.31784 * 246.63613 * 14 9 7 17 17 N 1.47872 * 105.11489 * 289.11281 * 16 14 9 18 18 C 1.34775 * 126.94165 * 181.87410 * 17 16 14 19 19 O 1.21283 * 120.00030 * 179.68511 * 18 17 16 20 20 C 1.50703 * 120.00329 * 359.68557 * 18 17 16 21 21 C 1.53004 * 109.47263 * 179.97438 * 20 18 17 22 22 C 1.50697 * 109.46866 * 180.02562 * 21 20 18 23 23 C 1.37981 * 120.07328 * 258.40631 * 22 21 20 24 24 C 1.38334 * 120.14718 * 179.97438 * 23 22 21 25 25 C 1.38377 * 120.29093 * 0.02562 * 24 23 22 26 26 C 1.37934 * 120.14869 * 359.97438 * 25 24 23 27 27 C 1.39558 * 120.07465 * 78.13827 * 22 21 20 28 28 C 1.47840 * 120.14479 * 359.97438 * 27 22 21 29 29 N 1.34773 * 120.00014 * 185.06423 * 28 27 22 30 30 O 1.21560 * 119.99978 * 5.06722 * 28 27 22 31 31 H 0.96996 * 120.00161 * 0.02562 * 1 2 3 32 32 H 1.08999 * 110.31419 * 63.07188 * 10 9 7 33 33 H 1.09001 * 110.31324 * 300.88547 * 10 9 7 34 34 H 1.08998 * 112.37289 * 64.27474 * 13 11 10 35 35 H 1.08998 * 112.36645 * 191.71616 * 13 11 10 36 36 H 1.09000 * 110.42193 * 170.14554 * 16 14 9 37 37 H 1.09004 * 110.20654 * 47.97033 * 16 14 9 38 38 H 1.09004 * 109.46839 * 60.00337 * 20 18 17 39 39 H 1.08996 * 109.47213 * 300.00362 * 20 18 17 40 40 H 1.09008 * 109.46737 * 300.00373 * 21 20 18 41 41 H 1.08995 * 109.47104 * 59.99916 * 21 20 18 42 42 H 1.08000 * 119.92353 * 359.95883 * 23 22 21 43 43 H 1.07997 * 119.85508 * 180.02562 * 24 23 22 44 44 H 1.08005 * 119.92999 * 179.97438 * 25 24 23 45 45 H 1.07996 * 120.07792 * 180.02562 * 26 25 24 46 46 H 0.97005 * 120.00012 * 0.02562 * 29 28 27 47 47 H 0.97001 * 120.00073 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3920 2.1074 -1.3948 5 1 1.5042 2.6200 0.8029 6 1 3.5965 1.4121 0.5918 7 6 2.0103 -1.2021 0.0005 8 1 3.0868 -1.2042 -0.0864 9 7 1.3301 -2.3855 0.1112 10 6 -0.1371 -2.5684 0.1344 11 6 -0.3525 -4.1016 0.3272 12 1 -1.3271 -4.4073 0.7078 13 6 0.9007 -4.4329 1.2144 14 6 1.9200 -3.7515 0.2324 15 1 2.9756 -3.7970 0.5000 16 6 1.5151 -4.4656 -1.0941 17 7 0.0585 -4.6936 -0.9802 18 6 -0.7363 -5.3155 -1.8736 19 8 -1.9216 -5.4386 -1.6481 20 6 -0.1523 -5.8578 -3.1526 21 6 -1.2596 -6.5108 -3.9823 22 6 -0.6754 -7.0536 -5.2610 23 6 -0.8313 -6.3581 -6.4424 24 6 -0.2951 -6.8547 -7.6169 25 6 0.3999 -8.0513 -7.6158 26 6 0.5630 -8.7566 -6.4416 27 6 0.0293 -8.2582 -5.2518 28 6 0.2058 -9.0055 -3.9885 29 7 0.9719 -10.1140 -3.9626 30 8 -0.3403 -8.6203 -2.9730 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5743 -2.2404 -0.8087 33 1 -0.5741 -2.0172 0.9670 34 1 0.8648 -3.9374 2.1846 35 1 1.0699 -5.5055 1.3092 36 1 2.0405 -5.4157 -1.1903 37 1 1.7321 -3.8242 -1.9484 38 1 0.6107 -6.6000 -2.9175 39 1 0.2962 -5.0433 -3.7213 40 1 -1.7077 -7.3254 -3.4132 41 1 -2.0229 -5.7690 -4.2173 42 1 -1.3732 -5.4240 -6.4502 43 1 -0.4196 -6.3062 -8.5389 44 1 0.8157 -8.4339 -8.5362 45 1 1.1060 -9.6901 -6.4419 46 1 1.4079 -10.4212 -4.7729 47 1 1.0874 -10.6045 -3.1338 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032731273.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:18 Heat of formation + Delta-G solvation = 12.337933 kcal Electronic energy + Delta-G solvation = -30199.535325 eV Core-core repulsion = 26155.846515 eV Total energy + Delta-G solvation = -4043.688810 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.65089 -39.85723 -38.35300 -37.74904 -34.57569 -33.53204 -33.38757 -31.50879 -31.16185 -29.90016 -28.78591 -28.43508 -25.22928 -25.00143 -23.99177 -23.13218 -21.72613 -20.77696 -20.14865 -19.73428 -18.27153 -18.18122 -17.13458 -17.03347 -16.31393 -15.82657 -15.72828 -15.36019 -15.31832 -14.97397 -14.78704 -14.38618 -13.94250 -13.79448 -13.41935 -13.30464 -13.18454 -12.84749 -12.42221 -12.13026 -11.95239 -11.82188 -11.74072 -11.54486 -11.33001 -11.17234 -10.93419 -10.91002 -10.80104 -10.70688 -10.52013 -10.18639 -10.03387 -9.94091 -9.74101 -9.60277 -9.27682 -9.26869 -8.91832 -8.63567 -7.84206 -6.88039 -5.73759 -3.07669 0.59221 1.07121 2.67250 3.24576 3.29589 3.38708 3.43862 3.46485 3.50524 3.67379 4.44903 4.46875 4.50424 4.55884 4.75195 5.02778 5.07623 5.16583 5.25726 5.26946 5.35109 5.45320 5.47697 5.57256 5.61318 5.69658 5.71586 5.87069 5.87381 5.92526 5.99658 6.05588 6.15975 6.28138 6.30988 6.39643 6.49215 6.50872 6.59391 6.60704 6.67040 6.68674 6.81861 7.07110 7.48245 7.56314 7.76436 8.05536 8.13980 8.28756 8.81708 9.13646 9.74641 10.45225 11.38273 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.014769 B = 0.002789 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.371573 B =10036.281561 C =10823.884541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.231 4.231 8 H 0.080 0.920 9 N -0.598 5.598 10 C 0.174 3.826 11 C 0.098 3.902 12 H 0.112 0.888 13 C -0.150 4.150 14 C 0.140 3.860 15 H 0.105 0.895 16 C 0.085 3.915 17 N -0.609 5.609 18 C 0.534 3.466 19 O -0.556 6.556 20 C -0.116 4.116 21 C -0.076 4.076 22 C -0.013 4.013 23 C -0.125 4.125 24 C -0.089 4.089 25 C -0.137 4.137 26 C -0.085 4.085 27 C -0.143 4.143 28 C 0.556 3.444 29 N -0.855 5.855 30 O -0.517 6.517 31 H 0.253 0.747 32 H 0.044 0.956 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.111 0.889 41 H 0.073 0.927 42 H 0.132 0.868 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.124 0.876 46 H 0.398 0.602 47 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.889 -20.512 -13.585 24.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.098 0.902 9 N -0.322 5.322 10 C 0.049 3.951 11 C -0.005 4.005 12 H 0.130 0.870 13 C -0.190 4.190 14 C 0.031 3.969 15 H 0.123 0.877 16 C -0.040 4.040 17 N -0.343 5.343 18 C 0.323 3.677 19 O -0.436 6.436 20 C -0.155 4.155 21 C -0.113 4.113 22 C -0.014 4.014 23 C -0.143 4.143 24 C -0.107 4.107 25 C -0.155 4.155 26 C -0.104 4.104 27 C -0.146 4.146 28 C 0.343 3.657 29 N -0.419 5.419 30 O -0.394 6.394 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.129 0.871 41 H 0.092 0.908 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.145 0.855 45 H 0.142 0.858 46 H 0.227 0.773 47 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 2.728 -19.920 -12.983 23.933 hybrid contribution 0.877 0.542 -0.400 1.106 sum 3.605 -19.378 -13.383 23.824 Atomic orbital electron populations 1.69936 1.04953 1.25231 1.56281 1.24840 0.95661 0.97679 1.02080 0.86124 0.78655 0.83655 0.77431 1.21741 1.21671 1.20597 1.19044 0.90783 0.82200 1.43877 0.90216 1.45241 1.01390 1.00054 1.85494 1.21932 0.84638 0.87552 1.01000 1.24297 0.97621 0.96237 0.82314 0.86995 1.24131 0.96843 0.99242 0.98763 1.23163 0.96449 0.86198 0.91041 0.87704 1.23237 0.80285 0.98535 1.01965 1.49201 1.09307 1.55883 1.19870 1.20066 0.86001 0.77171 0.84440 1.90635 1.15673 1.59244 1.78017 1.21413 0.99405 1.00589 0.94135 1.20628 0.97094 1.01858 0.91713 1.20170 0.93132 0.92047 0.96058 1.21208 1.00845 1.00404 0.91845 1.21390 0.95585 0.95470 0.98254 1.21058 1.00622 0.95843 0.97990 1.21229 0.97936 0.99179 0.92057 1.19756 1.04198 0.97327 0.93354 1.18350 0.78467 0.80359 0.88538 1.43795 1.53018 1.29491 1.15621 1.90881 1.46604 1.67031 1.34839 0.93627 0.93824 0.92478 0.89886 0.91730 0.93075 0.91355 0.89234 0.90026 0.87135 0.90812 0.84981 0.85485 0.85531 0.85810 0.77293 0.76447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.15 10.59 55.49 0.59 -26.57 16 2 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 3 Si 0.91 21.90 29.56 -169.99 -5.02 16.88 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.23 -6.25 10.37 -15.06 -0.16 -6.41 16 8 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 9 N -0.60 -14.79 3.03 -156.35 -0.47 -15.26 16 10 C 0.17 4.34 4.78 -1.67 -0.01 4.33 16 11 C 0.10 2.04 5.24 -62.55 -0.33 1.71 16 12 H 0.11 2.30 8.05 -51.93 -0.42 1.88 16 13 C -0.15 -2.73 6.80 -22.30 -0.15 -2.88 16 14 C 0.14 2.72 5.52 -62.56 -0.35 2.38 16 15 H 0.11 1.82 8.14 -51.93 -0.42 1.39 16 16 C 0.09 1.56 6.01 -1.69 -0.01 1.55 16 17 N -0.61 -12.22 2.95 -156.80 -0.46 -12.68 16 18 C 0.53 10.79 7.90 -10.98 -0.09 10.71 16 19 O -0.56 -12.90 16.33 5.55 0.09 -12.80 16 20 C -0.12 -1.86 4.48 -27.88 -0.13 -1.99 16 21 C -0.08 -1.13 3.91 -27.88 -0.11 -1.24 16 22 C -0.01 -0.16 5.18 -104.23 -0.54 -0.70 16 23 C -0.13 -1.27 9.66 -39.64 -0.38 -1.66 16 24 C -0.09 -0.72 10.04 -39.49 -0.40 -1.11 16 25 C -0.14 -0.97 10.03 -39.64 -0.40 -1.37 16 26 C -0.09 -0.64 9.53 -39.18 -0.37 -1.01 16 27 C -0.14 -1.51 5.86 -104.97 -0.62 -2.13 16 28 C 0.56 6.27 7.61 -12.33 -0.09 6.17 16 29 N -0.85 -5.74 8.82 30.53 0.27 -5.48 16 30 O -0.52 -7.99 12.63 5.31 0.07 -7.92 16 31 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.04 1.25 7.80 -51.93 -0.40 0.84 16 33 H 0.06 1.56 7.34 -51.93 -0.38 1.18 16 34 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.09 1.41 6.44 -51.93 -0.33 1.07 16 39 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.11 1.90 5.88 -51.92 -0.31 1.60 16 41 H 0.07 1.12 7.94 -51.93 -0.41 0.71 16 42 H 0.13 1.23 8.02 -52.49 -0.42 0.81 16 43 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 45 H 0.12 0.51 6.44 -52.49 -0.34 0.17 16 46 H 0.40 1.43 6.89 -40.82 -0.28 1.15 16 47 H 0.40 2.35 8.93 -40.82 -0.36 1.98 16 LS Contribution 378.48 15.07 5.70 5.70 Total: -1.00 -35.69 378.48 -10.05 -45.73 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -6.59 Total: 6.30 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: -4.22 Total: 6.10 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -0.08 Total: -59.98 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: 0.16 Total: -20.73 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.69 -10.05 -45.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032731273.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.071 kcal (2) G-P(sol) polarization free energy of solvation -35.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds