Wall clock time and date at job start Wed Apr 1 2020 02:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00082 * 2 1 4 4 H 1.48506 * 109.47023 * 270.00263 * 3 2 1 5 5 H 1.48507 * 109.46835 * 29.99513 * 3 2 1 6 6 H 1.48495 * 109.47289 * 149.99967 * 3 2 1 7 7 C 1.38813 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00009 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99882 * 0.02562 * 7 2 1 10 10 C 1.48156 * 126.39737 * 359.95040 * 9 7 2 11 11 C 1.55297 * 107.04115 * 175.03656 * 10 9 7 12 12 C 1.53696 * 101.81647 * 337.55464 * 11 10 9 13 13 H 1.09001 * 111.11390 * 281.39799 * 12 11 10 14 14 C 1.51914 * 115.02227 * 153.45478 * 12 11 10 15 15 C 1.53880 * 107.33778 * 184.56305 * 14 12 11 16 16 N 1.46597 * 110.68227 * 51.81961 * 15 14 12 17 17 C 1.34776 * 119.75855 * 132.27107 * 16 15 14 18 18 O 1.21552 * 120.00531 * 176.21438 * 17 16 15 19 19 C 1.47869 * 119.99801 * 356.21957 * 17 16 15 20 20 C 1.39701 * 120.07370 * 49.46046 * 19 17 16 21 21 C 1.38051 * 120.14324 * 179.97438 * 20 19 17 22 22 C 1.38101 * 120.29909 * 0.02562 * 21 20 19 23 23 C 1.39663 * 120.14039 * 359.97438 * 22 21 20 24 24 C 1.47867 * 120.07062 * 180.02562 * 23 22 21 25 25 N 1.34772 * 119.99814 * 0.02562 * 24 23 22 26 26 O 1.21553 * 119.99762 * 179.97438 * 24 23 22 27 27 C 1.39296 * 120.06809 * 229.18701 * 19 17 16 28 28 C 1.47796 * 120.48885 * 312.25555 * 16 15 14 29 29 C 1.45501 * 126.39705 * 179.97438 * 9 7 2 30 30 H 1.08991 * 109.56993 * 94.11843 * 29 9 7 31 31 H 0.96998 * 120.00131 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.91840 * 294.38370 * 10 9 7 33 33 H 1.09001 * 109.92084 * 55.49044 * 10 9 7 34 34 H 1.09000 * 110.96027 * 95.68842 * 11 10 9 35 35 H 1.09005 * 110.96127 * 219.39031 * 11 10 9 36 36 H 1.09003 * 109.84296 * 65.11698 * 14 12 11 37 37 H 1.08993 * 109.89326 * 304.04242 * 14 12 11 38 38 H 1.08996 * 109.23565 * 291.51885 * 15 14 12 39 39 H 1.09002 * 109.22845 * 172.11481 * 15 14 12 40 40 H 1.08001 * 119.92646 * 359.96366 * 20 19 17 41 41 H 1.08006 * 119.85453 * 180.02562 * 21 20 19 42 42 H 1.07998 * 119.92655 * 180.02562 * 22 21 20 43 43 H 0.97000 * 120.00485 * 359.97438 * 25 24 23 44 44 H 0.97004 * 119.99675 * 180.02562 * 25 24 23 45 45 H 1.07995 * 120.15262 * 0.02562 * 27 19 17 46 46 H 1.08993 * 110.06662 * 170.49505 * 28 16 15 47 47 H 1.09000 * 110.06231 * 292.05683 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1468 -2.5532 0.0010 11 6 -0.4343 -4.0739 -0.1276 12 6 0.8681 -4.5878 -0.7617 13 1 0.8912 -4.3829 -1.8321 14 6 1.1978 -6.0406 -0.4644 15 6 2.5775 -6.3330 -1.0799 16 7 3.5603 -5.3360 -0.6449 17 6 4.7634 -5.7373 -0.1889 18 8 5.6066 -4.9137 0.1080 19 6 5.0578 -7.1798 -0.0499 20 6 4.7979 -8.0525 -1.1094 21 6 5.0727 -9.3994 -0.9813 22 6 5.6051 -9.8933 0.1933 23 6 5.8697 -9.0316 1.2601 24 6 6.4403 -9.5620 2.5169 25 7 6.7062 -10.8781 2.6336 26 8 6.6705 -8.8109 3.4445 27 6 5.6001 -7.6703 1.1356 28 6 3.2417 -3.8940 -0.7030 29 6 1.9082 -3.7214 0.0005 30 1 1.9868 -4.0854 1.0248 31 1 -0.4850 0.8400 0.0004 32 1 -0.5626 -2.1743 0.9347 33 1 -0.5808 -2.0174 -0.8432 34 1 -0.5954 -4.5244 0.8517 35 1 -1.2860 -4.2556 -0.7832 36 1 0.4462 -6.6900 -0.9134 37 1 1.2311 -6.2003 0.6133 38 1 2.4983 -6.3085 -2.1667 39 1 2.9079 -7.3233 -0.7664 40 1 4.3810 -7.6728 -2.0304 41 1 4.8703 -10.0699 -1.8035 42 1 5.8181 -10.9479 0.2867 43 1 6.5228 -11.4775 1.8933 44 1 7.0802 -11.2261 3.4582 45 1 5.8066 -6.9992 1.9562 46 1 4.0127 -3.3197 -0.1895 47 1 3.1614 -3.5703 -1.7407 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042120222.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:53 Heat of formation + Delta-G solvation = -6.102711 kcal Electronic energy + Delta-G solvation = -30147.292441 eV Core-core repulsion = 26102.803985 eV Total energy + Delta-G solvation = -4044.488456 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.88550 -39.95712 -38.63710 -37.75555 -35.45513 -34.25685 -32.92657 -31.82862 -31.47165 -31.14487 -29.24769 -28.44163 -25.12301 -24.49069 -24.44184 -22.85442 -22.27115 -21.27089 -20.19802 -19.82374 -19.30473 -18.32821 -17.24508 -16.89750 -16.51946 -16.42240 -15.82789 -15.44499 -15.07060 -14.89120 -14.65530 -14.43994 -14.32080 -14.09627 -13.96742 -13.64363 -13.21012 -13.02303 -12.98558 -12.59780 -12.31984 -12.22241 -11.88290 -11.75344 -11.52448 -11.29273 -10.95189 -10.80811 -10.73774 -10.46239 -10.15408 -10.12263 -9.97239 -9.89944 -9.85934 -9.63152 -9.51707 -9.38787 -9.22576 -8.61632 -8.47425 -6.84735 -5.70679 -3.04489 0.33679 0.78963 2.35009 2.73609 3.01626 3.14384 3.43246 3.49032 3.49870 3.51623 4.22907 4.31462 4.41810 4.52353 4.61902 4.73704 4.89726 4.95152 5.01275 5.09253 5.23899 5.38417 5.45327 5.51227 5.61078 5.67362 5.76029 5.78753 5.83118 5.89872 5.95181 6.01171 6.06269 6.11947 6.16606 6.29648 6.36689 6.39731 6.47451 6.55630 6.69342 6.73992 6.89292 7.04917 7.48304 7.56374 7.61543 7.82533 7.85678 8.20747 8.25040 9.20326 9.83206 10.49536 11.41650 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.016455 B = 0.002723 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.151477 B =10280.399192 C =10988.413427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.228 4.228 8 H 0.080 0.920 9 N -0.591 5.591 10 C 0.177 3.823 11 C -0.138 4.138 12 C -0.114 4.114 13 H 0.077 0.923 14 C -0.119 4.119 15 C 0.099 3.901 16 N -0.597 5.597 17 C 0.553 3.447 18 O -0.529 6.529 19 C -0.123 4.123 20 C -0.064 4.064 21 C -0.131 4.131 22 C -0.071 4.071 23 C -0.145 4.145 24 C 0.564 3.436 25 N -0.852 5.852 26 O -0.532 6.532 27 C -0.010 4.010 28 C 0.117 3.883 29 C 0.156 3.844 30 H 0.024 0.976 31 H 0.252 0.748 32 H 0.037 0.963 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.130 0.870 43 H 0.400 0.600 44 H 0.406 0.594 45 H 0.145 0.855 46 H 0.093 0.907 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.311 -27.031 -3.775 28.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.202 4.202 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.356 4.356 8 H 0.098 0.902 9 N -0.317 5.317 10 C 0.053 3.947 11 C -0.176 4.176 12 C -0.134 4.134 13 H 0.096 0.904 14 C -0.158 4.158 15 C -0.024 4.024 16 N -0.330 5.330 17 C 0.340 3.660 18 O -0.406 6.406 19 C -0.126 4.126 20 C -0.082 4.082 21 C -0.149 4.149 22 C -0.090 4.090 23 C -0.148 4.148 24 C 0.350 3.650 25 N -0.416 5.416 26 O -0.409 6.409 27 C -0.030 4.030 28 C -0.005 4.005 29 C 0.047 3.953 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.155 0.845 41 H 0.155 0.845 42 H 0.147 0.853 43 H 0.230 0.770 44 H 0.237 0.763 45 H 0.163 0.837 46 H 0.112 0.888 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.778 -25.664 -3.109 26.726 hybrid contribution 0.369 0.358 -0.097 0.523 sum 7.147 -25.306 -3.206 26.491 Atomic orbital electron populations 1.69940 1.04900 1.25076 1.57015 1.24780 0.95681 0.97658 1.02117 0.86144 0.78771 0.83480 0.77592 1.21582 1.21693 1.20532 1.19052 0.90457 0.82249 1.43878 0.90240 1.44167 1.01650 0.99148 1.86685 1.21553 0.83655 0.88491 1.01048 1.22722 0.95961 0.99644 0.99264 1.22268 0.97478 0.93393 1.00217 0.90421 1.21790 0.95189 0.97479 1.01342 1.22045 0.89458 0.91790 0.99073 1.48215 1.13641 1.08154 1.62988 1.18281 0.82459 0.87666 0.77622 1.90825 1.46017 1.53968 1.49746 1.19982 1.02911 0.94088 0.95643 1.21621 0.95328 0.93165 0.98125 1.21040 1.00541 0.95323 0.98016 1.21402 0.95952 0.99156 0.92489 1.19781 1.05699 0.94478 0.94840 1.18227 0.77284 0.82330 0.87163 1.43725 1.68364 1.08733 1.20811 1.90868 1.52210 1.57409 1.40404 1.21301 0.90913 0.94115 0.96623 1.21772 0.99189 0.77855 1.01643 1.20981 0.90954 0.87699 0.95692 0.95870 0.93763 0.94448 0.92554 0.92567 0.92223 0.90807 0.91344 0.91452 0.89687 0.84487 0.84537 0.85272 0.77035 0.76302 0.83729 0.88846 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.08 10.43 55.49 0.58 -26.50 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.23 -6.36 9.88 -15.06 -0.15 -6.50 16 8 H 0.08 2.18 7.41 -52.49 -0.39 1.79 16 9 N -0.59 -14.92 3.35 -162.94 -0.55 -15.46 16 10 C 0.18 4.22 5.46 -1.91 -0.01 4.21 16 11 C -0.14 -2.47 6.54 -25.15 -0.16 -2.64 16 12 C -0.11 -1.88 2.61 -89.56 -0.23 -2.12 16 13 H 0.08 1.31 8.13 -51.93 -0.42 0.89 16 14 C -0.12 -1.49 5.71 -26.82 -0.15 -1.64 16 15 C 0.10 1.12 5.04 -3.53 -0.02 1.11 16 16 N -0.60 -9.16 3.01 -173.86 -0.52 -9.69 16 17 C 0.55 8.96 7.23 -12.32 -0.09 8.87 16 18 O -0.53 -10.81 16.41 5.32 0.09 -10.73 16 19 C -0.12 -1.52 4.95 -105.02 -0.52 -2.04 16 20 C -0.06 -0.54 7.36 -39.10 -0.29 -0.83 16 21 C -0.13 -0.80 10.02 -39.70 -0.40 -1.19 16 22 C -0.07 -0.44 9.54 -39.10 -0.37 -0.81 16 23 C -0.14 -1.41 5.87 -105.02 -0.62 -2.03 16 24 C 0.56 5.84 8.05 -12.32 -0.10 5.74 16 25 N -0.85 -4.52 8.82 30.53 0.27 -4.25 16 26 O -0.53 -8.04 17.18 5.32 0.09 -7.95 16 27 C -0.01 -0.13 9.27 -38.78 -0.36 -0.49 16 28 C 0.12 2.22 5.68 -3.96 -0.02 2.20 16 29 C 0.16 3.20 2.77 -67.85 -0.19 3.01 16 30 H 0.02 0.53 7.90 -51.93 -0.41 0.12 16 31 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.04 0.99 7.77 -51.93 -0.40 0.59 16 33 H 0.06 1.48 7.19 -51.93 -0.37 1.11 16 34 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.91 7.96 -51.93 -0.41 0.49 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.78 4.65 -51.93 -0.24 0.54 16 40 H 0.14 0.97 6.95 -52.49 -0.36 0.60 16 41 H 0.14 0.42 8.06 -52.48 -0.42 -0.01 16 42 H 0.13 0.30 6.39 -52.49 -0.34 -0.03 16 43 H 0.40 0.79 6.85 -40.82 -0.28 0.51 16 44 H 0.41 1.71 8.93 -40.82 -0.36 1.35 16 45 H 0.14 2.13 7.64 -52.49 -0.40 1.73 16 46 H 0.09 2.02 6.78 -51.93 -0.35 1.67 16 47 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 373.15 15.07 5.62 5.62 Total: -1.00 -36.43 373.15 -9.64 -46.07 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -6.42 Total: 0.81 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -3.78 Total: 4.58 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: -0.22 Total: -55.90 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: 0.18 Total: -18.67 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.43 -9.64 -46.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042120222.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.964 kcal (2) G-P(sol) polarization free energy of solvation -36.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds