Wall clock time and date at job start Wed Apr 1 2020 02:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00082 * 2 1 4 4 H 1.48506 * 109.47023 * 270.00263 * 3 2 1 5 5 H 1.48507 * 109.46835 * 29.99513 * 3 2 1 6 6 H 1.48495 * 109.47289 * 149.99967 * 3 2 1 7 7 C 1.38813 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00009 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99882 * 0.02562 * 7 2 1 10 10 C 1.48156 * 126.39737 * 359.95040 * 9 7 2 11 11 C 1.55297 * 107.04115 * 175.03656 * 10 9 7 12 12 C 1.53696 * 101.81647 * 337.55464 * 11 10 9 13 13 H 1.09001 * 111.11390 * 281.39799 * 12 11 10 14 14 C 1.51914 * 115.02227 * 153.45478 * 12 11 10 15 15 C 1.53880 * 107.33778 * 184.56305 * 14 12 11 16 16 N 1.46597 * 110.68227 * 51.81961 * 15 14 12 17 17 C 1.34776 * 119.75855 * 132.27107 * 16 15 14 18 18 O 1.21552 * 120.00531 * 176.21438 * 17 16 15 19 19 C 1.47869 * 119.99801 * 356.21957 * 17 16 15 20 20 C 1.39701 * 120.07370 * 49.46046 * 19 17 16 21 21 C 1.38051 * 120.14324 * 179.97438 * 20 19 17 22 22 C 1.38101 * 120.29909 * 0.02562 * 21 20 19 23 23 C 1.39663 * 120.14039 * 359.97438 * 22 21 20 24 24 C 1.47867 * 120.07062 * 180.02562 * 23 22 21 25 25 N 1.34772 * 119.99814 * 0.02562 * 24 23 22 26 26 O 1.21553 * 119.99762 * 179.97438 * 24 23 22 27 27 C 1.39296 * 120.06809 * 229.18701 * 19 17 16 28 28 C 1.47796 * 120.48885 * 312.25555 * 16 15 14 29 29 C 1.45501 * 126.39705 * 179.97438 * 9 7 2 30 30 H 1.08991 * 109.56993 * 94.11843 * 29 9 7 31 31 H 0.96998 * 120.00131 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.91840 * 294.38370 * 10 9 7 33 33 H 1.09001 * 109.92084 * 55.49044 * 10 9 7 34 34 H 1.09000 * 110.96027 * 95.68842 * 11 10 9 35 35 H 1.09005 * 110.96127 * 219.39031 * 11 10 9 36 36 H 1.09003 * 109.84296 * 65.11698 * 14 12 11 37 37 H 1.08993 * 109.89326 * 304.04242 * 14 12 11 38 38 H 1.08996 * 109.23565 * 291.51885 * 15 14 12 39 39 H 1.09002 * 109.22845 * 172.11481 * 15 14 12 40 40 H 1.08001 * 119.92646 * 359.96366 * 20 19 17 41 41 H 1.08006 * 119.85453 * 180.02562 * 21 20 19 42 42 H 1.07998 * 119.92655 * 180.02562 * 22 21 20 43 43 H 0.97000 * 120.00485 * 359.97438 * 25 24 23 44 44 H 0.97004 * 119.99675 * 180.02562 * 25 24 23 45 45 H 1.07995 * 120.15262 * 0.02562 * 27 19 17 46 46 H 1.08993 * 110.06662 * 170.49505 * 28 16 15 47 47 H 1.09000 * 110.06231 * 292.05683 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1468 -2.5532 0.0010 11 6 -0.4343 -4.0739 -0.1276 12 6 0.8681 -4.5878 -0.7617 13 1 0.8912 -4.3829 -1.8321 14 6 1.1978 -6.0406 -0.4644 15 6 2.5775 -6.3330 -1.0799 16 7 3.5603 -5.3360 -0.6449 17 6 4.7634 -5.7373 -0.1889 18 8 5.6066 -4.9137 0.1080 19 6 5.0578 -7.1798 -0.0499 20 6 4.7979 -8.0525 -1.1094 21 6 5.0727 -9.3994 -0.9813 22 6 5.6051 -9.8933 0.1933 23 6 5.8697 -9.0316 1.2601 24 6 6.4403 -9.5620 2.5169 25 7 6.7062 -10.8781 2.6336 26 8 6.6705 -8.8109 3.4445 27 6 5.6001 -7.6703 1.1356 28 6 3.2417 -3.8940 -0.7030 29 6 1.9082 -3.7214 0.0005 30 1 1.9868 -4.0854 1.0248 31 1 -0.4850 0.8400 0.0004 32 1 -0.5626 -2.1743 0.9347 33 1 -0.5808 -2.0174 -0.8432 34 1 -0.5954 -4.5244 0.8517 35 1 -1.2860 -4.2556 -0.7832 36 1 0.4462 -6.6900 -0.9134 37 1 1.2311 -6.2003 0.6133 38 1 2.4983 -6.3085 -2.1667 39 1 2.9079 -7.3233 -0.7664 40 1 4.3810 -7.6728 -2.0304 41 1 4.8703 -10.0699 -1.8035 42 1 5.8181 -10.9479 0.2867 43 1 6.5228 -11.4775 1.8933 44 1 7.0802 -11.2261 3.4582 45 1 5.8066 -6.9992 1.9562 46 1 4.0127 -3.3197 -0.1895 47 1 3.1614 -3.5703 -1.7407 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042120222.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:52 Heat of formation + Delta-G solvation = -34.220459 kcal Electronic energy + Delta-G solvation = -30148.511718 eV Core-core repulsion = 26102.803985 eV Total energy + Delta-G solvation = -4045.707733 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.92778 -40.95355 -39.91158 -38.78819 -36.94636 -34.99837 -34.70017 -33.00941 -32.51388 -32.16371 -30.69778 -30.07613 -26.61772 -26.07058 -25.27503 -23.90368 -23.57293 -22.08084 -21.82535 -21.25016 -20.44036 -19.19725 -18.62455 -17.97881 -17.79664 -17.16855 -16.98504 -16.84934 -16.48202 -15.97313 -15.85915 -15.72276 -15.53432 -15.36479 -14.88737 -14.84069 -14.63952 -14.43225 -14.03288 -13.86518 -13.68298 -13.42398 -13.18621 -13.09587 -12.91116 -12.76221 -12.54627 -12.50110 -12.14492 -12.02272 -11.79733 -11.55995 -11.39864 -11.31696 -11.06652 -11.02463 -10.78034 -10.75577 -10.09936 -9.99382 -9.75693 -8.93920 -7.89574 -5.24481 -0.34238 0.02838 1.40917 1.42161 1.44114 1.51630 1.69491 1.94431 2.45338 2.47898 2.75665 3.28430 3.30434 3.49225 3.73348 3.80066 3.84229 3.92498 3.97150 4.02363 4.10999 4.23871 4.27464 4.28727 4.37466 4.52446 4.59274 4.60563 4.71658 4.79924 4.85423 4.88603 4.90962 5.09776 5.13997 5.14505 5.20991 5.24593 5.25886 5.34853 5.47101 5.57577 5.64611 5.72736 5.76699 5.84544 6.16493 6.29391 6.39681 6.97829 7.05470 7.25942 7.73391 8.40077 9.21266 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.016455 B = 0.002723 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.151477 B =10280.399192 C =10988.413427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.060 4.060 3 Si 0.971 3.029 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.239 4.239 8 H 0.072 0.928 9 N -0.613 5.613 10 C 0.179 3.821 11 C -0.122 4.122 12 C -0.095 4.095 13 H 0.083 0.917 14 C -0.111 4.111 15 C 0.093 3.907 16 N -0.594 5.594 17 C 0.546 3.454 18 O -0.591 6.591 19 C -0.142 4.142 20 C -0.057 4.057 21 C -0.110 4.110 22 C -0.046 4.046 23 C -0.154 4.154 24 C 0.558 3.442 25 N -0.822 5.822 26 O -0.596 6.596 27 C -0.039 4.039 28 C 0.130 3.870 29 C 0.146 3.854 30 H 0.001 0.999 31 H 0.248 0.752 32 H -0.003 1.003 33 H 0.026 0.974 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.120 0.880 37 H 0.058 0.942 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.160 0.840 41 H 0.188 0.812 42 H 0.180 0.820 43 H 0.421 0.579 44 H 0.414 0.586 45 H 0.099 0.901 46 H 0.051 0.949 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.908 -32.738 -6.701 33.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.254 4.254 3 Si 0.800 3.200 4 H -0.207 1.207 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.368 4.368 8 H 0.090 0.910 9 N -0.338 5.338 10 C 0.055 3.945 11 C -0.160 4.160 12 C -0.114 4.114 13 H 0.101 0.899 14 C -0.150 4.150 15 C -0.027 4.027 16 N -0.325 5.325 17 C 0.336 3.664 18 O -0.472 6.472 19 C -0.146 4.146 20 C -0.075 4.075 21 C -0.127 4.127 22 C -0.064 4.064 23 C -0.158 4.158 24 C 0.345 3.655 25 N -0.387 5.387 26 O -0.478 6.478 27 C -0.060 4.060 28 C 0.006 3.994 29 C 0.038 3.962 30 H 0.018 0.982 31 H 0.057 0.943 32 H 0.015 0.985 33 H 0.044 0.956 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.138 0.862 37 H 0.077 0.923 38 H 0.117 0.883 39 H 0.134 0.866 40 H 0.178 0.822 41 H 0.205 0.795 42 H 0.198 0.802 43 H 0.254 0.746 44 H 0.246 0.754 45 H 0.117 0.883 46 H 0.070 0.930 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.361 -31.496 -6.073 32.701 hybrid contribution 0.540 2.016 0.846 2.252 sum 6.900 -29.480 -5.227 30.724 Atomic orbital electron populations 1.70140 1.06005 1.25300 1.58143 1.25542 0.96589 1.00643 1.02591 0.85189 0.77492 0.79632 0.77732 1.20725 1.21673 1.20354 1.19290 0.90527 0.83873 1.43092 0.90984 1.44437 1.02642 1.00236 1.86482 1.21388 0.82748 0.92715 0.97662 1.22598 0.97848 0.94660 1.00856 1.22207 0.94324 0.95383 0.99511 0.89913 1.21808 0.96992 0.94725 1.01427 1.22463 0.87637 0.91776 1.00867 1.48268 1.14479 1.07088 1.62706 1.19064 0.81841 0.89375 0.76147 1.90779 1.48029 1.56130 1.52246 1.19623 1.05843 0.91823 0.97261 1.21916 0.94590 0.93852 0.97179 1.21606 0.97749 0.94464 0.98888 1.21961 0.92910 1.00835 0.90722 1.19791 1.06384 0.93572 0.96008 1.18482 0.76910 0.83388 0.86743 1.43483 1.66247 1.07093 1.21857 1.90844 1.55167 1.59301 1.42491 1.21058 0.93415 0.95400 0.96091 1.21318 0.96976 0.80451 1.00656 1.21122 0.93303 0.86398 0.95387 0.98178 0.94269 0.98489 0.95568 0.91528 0.89141 0.86169 0.92298 0.88266 0.86583 0.82227 0.79454 0.80249 0.74574 0.75387 0.88302 0.93004 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.36 10.43 21.65 0.23 -58.13 16 2 C -0.06 -3.58 5.49 84.86 0.47 -3.12 16 3 Si 0.97 48.31 29.55 68.60 2.03 50.33 16 4 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 5 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 7 C -0.24 -14.09 9.88 84.03 0.83 -13.26 16 8 H 0.07 4.24 7.41 -2.91 -0.02 4.22 16 9 N -0.61 -32.63 3.35 -669.41 -2.24 -34.88 16 10 C 0.18 8.96 5.46 86.85 0.47 9.43 16 11 C -0.12 -4.22 6.54 31.62 0.21 -4.02 16 12 C -0.09 -2.97 2.61 -10.11 -0.03 -3.00 16 13 H 0.08 2.57 8.13 -2.39 -0.02 2.55 16 14 C -0.11 -2.34 5.71 30.53 0.17 -2.16 16 15 C 0.09 1.76 5.04 86.66 0.44 2.20 16 16 N -0.59 -18.26 3.01 -822.26 -2.47 -20.74 16 17 C 0.55 18.57 7.23 86.79 0.63 19.19 16 18 O -0.59 -26.64 16.41 -3.88 -0.06 -26.70 16 19 C -0.14 -3.44 4.95 -20.12 -0.10 -3.54 16 20 C -0.06 -0.71 7.36 22.58 0.17 -0.54 16 21 C -0.11 -0.56 10.02 22.19 0.22 -0.34 16 22 C -0.05 -0.30 9.54 22.58 0.22 -0.08 16 23 C -0.15 -2.75 5.87 -20.12 -0.12 -2.87 16 24 C 0.56 11.14 8.05 86.79 0.70 11.84 16 25 N -0.82 -6.24 8.82 -175.59 -1.55 -7.79 16 26 O -0.60 -19.19 17.18 -3.88 -0.07 -19.26 16 27 C -0.04 -1.05 9.27 22.79 0.21 -0.84 16 28 C 0.13 5.19 5.68 85.72 0.49 5.67 16 29 C 0.15 6.23 2.77 45.58 0.13 6.36 16 30 H 0.00 0.04 7.90 -2.39 -0.02 0.02 16 31 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 32 H 0.00 -0.18 7.77 -2.38 -0.02 -0.20 16 33 H 0.03 1.44 7.19 -2.39 -0.02 1.42 16 34 H 0.07 2.19 8.12 -2.39 -0.02 2.17 16 35 H 0.09 2.63 8.14 -2.38 -0.02 2.61 16 36 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.06 1.40 7.96 -2.39 -0.02 1.38 16 38 H 0.10 1.35 8.14 -2.39 -0.02 1.34 16 39 H 0.12 1.56 4.65 -2.39 -0.01 1.54 16 40 H 0.16 1.29 6.95 -2.91 -0.02 1.27 16 41 H 0.19 -0.71 8.06 -2.91 -0.02 -0.74 16 42 H 0.18 -0.65 6.39 -2.91 -0.02 -0.66 16 43 H 0.42 -0.52 6.85 -92.71 -0.64 -1.15 16 44 H 0.41 2.47 8.93 -92.71 -0.83 1.65 16 45 H 0.10 3.43 7.64 -2.91 -0.02 3.41 16 46 H 0.05 2.48 6.78 -2.39 -0.02 2.46 16 47 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -94.30 373.15 0.52 -93.78 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -0.44 Total: 2.44 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: 5.10 Total: 20.94 kcal Atomic # 7 Polarization: -115.50 SS G_CDS: -6.04 Total: -121.54 kcal Atomic # 8 Polarization: -45.83 SS G_CDS: -0.13 Total: -45.96 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 2.03 Total: 50.33 kcal Total: -94.30 0.52 -93.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042120222.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.560 kcal (2) G-P(sol) polarization free energy of solvation -94.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds