Wall clock time and date at job start Wed Apr 1 2020 02:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00050 * 2 1 4 4 H 1.48500 * 109.47095 * 239.99663 * 3 2 1 5 5 H 1.48509 * 109.46984 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47310 * 119.99610 * 3 2 1 7 7 C 1.38817 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99497 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99670 * 0.02562 * 7 2 1 10 10 C 1.46510 * 119.99627 * 180.02562 * 9 7 2 11 11 H 1.08994 * 112.94644 * 336.40451 * 10 9 7 12 12 C 1.53948 * 113.66232 * 107.81157 * 10 9 7 13 13 C 1.53956 * 87.29183 * 89.74074 * 12 10 9 14 14 H 1.09005 * 113.66118 * 270.26017 * 13 12 10 15 15 N 1.46500 * 113.66105 * 139.20668 * 13 12 10 16 16 C 1.34775 * 119.99985 * 107.81425 * 15 13 12 17 17 O 1.21525 * 120.00332 * 359.97438 * 16 15 13 18 18 C 1.48039 * 120.00193 * 179.97438 * 16 15 13 19 19 C 1.39562 * 119.99341 * 359.71786 * 18 16 15 20 20 C 1.37816 * 119.99281 * 179.76778 * 19 18 16 21 21 C 1.39557 * 120.00490 * 0.50795 * 20 19 18 22 22 C 1.48031 * 120.00174 * 179.71871 * 21 20 19 23 23 N 1.34770 * 120.00118 * 0.02937 * 22 21 20 24 24 O 1.21529 * 119.99927 * 180.02562 * 22 21 20 25 25 C 1.39561 * 119.99782 * 359.74960 * 21 20 19 26 26 C 1.37818 * 119.99729 * 359.97438 * 25 21 20 27 27 C 1.52907 * 86.78503 * 24.73059 * 13 12 10 28 28 C 1.52906 * 121.13720 * 209.38073 * 27 13 12 29 29 C 1.53954 * 86.88484 * 259.13292 * 28 27 13 30 30 C 1.52914 * 121.13343 * 100.81935 * 27 13 12 31 31 H 0.96997 * 120.00186 * 0.02562 * 1 2 3 32 32 H 0.96995 * 120.00715 * 0.02562 * 9 7 2 33 33 H 1.08994 * 113.57916 * 204.33940 * 12 10 9 34 34 H 1.08998 * 113.58166 * 335.05973 * 12 10 9 35 35 H 0.96993 * 120.00251 * 287.80638 * 15 13 12 36 36 H 1.07995 * 120.00152 * 0.02562 * 19 18 16 37 37 H 1.08003 * 119.99698 * 180.25716 * 20 19 18 38 38 H 0.96997 * 120.00237 * 359.97438 * 23 22 21 39 39 H 0.97004 * 120.00050 * 180.02562 * 23 22 21 40 40 H 1.07999 * 119.99972 * 179.97438 * 25 21 20 41 41 H 1.07997 * 119.99712 * 179.97438 * 26 25 21 42 42 H 1.09002 * 113.66405 * 13.65456 * 28 27 13 43 43 H 1.08998 * 113.66160 * 144.61606 * 28 27 13 44 44 H 1.08999 * 113.57483 * 89.91371 * 29 28 27 45 45 H 1.08992 * 113.58410 * 220.70827 * 29 28 27 46 46 H 1.08998 * 113.65700 * 215.29256 * 30 27 13 47 47 H 1.08999 * 113.66069 * 346.25550 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 3.0675 -3.5651 -0.3993 12 6 1.9925 -4.4070 1.3444 13 6 0.7241 -5.0987 0.8126 14 1 -0.1959 -4.5600 1.0397 15 7 0.6484 -6.5236 1.1444 16 6 -0.2306 -6.9540 2.0709 17 8 -0.9601 -6.1601 2.6315 18 6 -0.3075 -8.3940 2.4059 19 6 0.5263 -9.3065 1.7578 20 6 0.4580 -10.6464 2.0731 21 6 -0.4520 -11.0921 3.0326 22 6 -0.5296 -12.5321 3.3666 23 7 0.2791 -13.4127 2.7446 24 8 -1.3225 -12.9203 4.2019 25 6 -1.2895 -10.1802 3.6767 26 6 -1.2173 -8.8396 3.3656 27 6 1.2662 -4.8232 -0.5904 28 6 0.3230 -4.6175 -1.7762 29 6 0.6314 -6.0744 -2.1664 30 6 1.9596 -5.9198 -1.3995 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3881 -0.0002 33 1 2.8271 -5.0896 1.5037 34 1 1.8097 -3.7558 2.1992 35 1 1.2309 -7.1573 0.6972 36 1 1.2277 -8.9621 1.0124 37 1 1.1061 -11.3520 1.5746 38 1 0.9117 -13.1030 2.0777 39 1 0.2280 -14.3564 2.9632 40 1 -1.9941 -10.5252 4.4190 41 1 -1.8656 -8.1340 3.8637 42 1 -0.7148 -4.4525 -1.4863 43 1 0.6825 -3.8854 -2.4993 44 1 -0.0488 -6.7990 -1.7186 45 1 0.7603 -6.2207 -3.2387 46 1 2.7799 -5.5550 -2.0176 47 1 2.2307 -6.7945 -0.8083 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078802449.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:04 Heat of formation + Delta-G solvation = 11.555410 kcal Electronic energy + Delta-G solvation = -29255.981852 eV Core-core repulsion = 25212.259109 eV Total energy + Delta-G solvation = -4043.722743 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.94939 -40.41412 -39.30227 -37.84798 -35.12338 -34.35826 -34.21605 -32.66770 -31.43217 -31.29048 -29.56403 -25.80225 -25.60662 -24.41674 -24.04211 -23.10138 -22.71600 -21.50690 -20.31833 -20.18251 -19.07254 -18.30896 -17.52934 -17.21826 -16.88723 -16.13290 -15.53982 -15.45084 -15.28072 -15.22992 -14.90624 -14.79008 -14.53123 -14.17912 -13.97745 -13.89267 -13.12145 -12.92166 -12.74742 -12.70359 -12.50972 -12.15091 -11.98777 -11.75519 -11.57568 -11.55312 -10.95407 -10.84906 -10.69835 -10.59308 -10.27523 -10.23129 -10.13335 -9.99960 -9.91792 -9.62015 -9.49052 -9.47626 -9.43965 -8.85455 -8.72563 -7.00146 -5.79758 -3.09537 0.07788 0.89043 2.14509 2.93688 2.96293 3.11952 3.42496 3.47103 3.48269 3.57401 4.19730 4.24367 4.42930 4.51057 4.61145 4.67168 4.81906 4.84576 4.87917 4.95224 5.10549 5.20351 5.28757 5.40529 5.47555 5.58407 5.68896 5.69953 5.81815 5.86121 5.89996 5.95308 5.99434 6.00310 6.05275 6.17152 6.24240 6.33154 6.34844 6.44576 6.56593 6.66273 6.70624 6.78862 6.79640 7.03099 7.54381 7.67850 7.73086 8.20525 8.38247 9.49324 10.05749 10.40114 11.42094 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.022387 B = 0.002167 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.423128 B =12920.603109 C =13548.312657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.700 5.700 10 C 0.187 3.813 11 H 0.068 0.932 12 C -0.183 4.183 13 C 0.152 3.848 14 H 0.117 0.883 15 N -0.707 5.707 16 C 0.548 3.452 17 O -0.527 6.527 18 C -0.098 4.098 19 C -0.096 4.096 20 C -0.093 4.093 21 C -0.123 4.123 22 C 0.563 3.437 23 N -0.850 5.850 24 O -0.536 6.536 25 C -0.065 4.065 26 C -0.069 4.069 27 C -0.128 4.128 28 C -0.113 4.113 29 C -0.142 4.142 30 C -0.109 4.109 31 H 0.257 0.743 32 H 0.387 0.613 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.395 0.605 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.402 0.598 39 H 0.406 0.594 40 H 0.144 0.856 41 H 0.146 0.854 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.072 0.928 45 H 0.062 0.938 46 H 0.086 0.914 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.710 -26.624 -0.424 26.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.338 5.338 10 C 0.073 3.927 11 H 0.086 0.914 12 C -0.226 4.226 13 C 0.048 3.952 14 H 0.135 0.865 15 N -0.359 5.359 16 C 0.334 3.666 17 O -0.404 6.404 18 C -0.102 4.102 19 C -0.115 4.115 20 C -0.112 4.112 21 C -0.126 4.126 22 C 0.349 3.651 23 N -0.414 5.414 24 O -0.414 6.414 25 C -0.084 4.084 26 C -0.087 4.087 27 C -0.131 4.131 28 C -0.151 4.151 29 C -0.180 4.180 30 C -0.147 4.147 31 H 0.067 0.933 32 H 0.221 0.779 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.231 0.769 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.231 0.769 39 H 0.237 0.763 40 H 0.161 0.839 41 H 0.164 0.836 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.091 0.909 45 H 0.081 0.919 46 H 0.105 0.895 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.717 -25.898 0.517 26.045 hybrid contribution 0.802 0.296 -0.438 0.961 sum 3.519 -25.602 0.079 25.843 Atomic orbital electron populations 1.69652 1.05105 1.25951 1.56912 1.24768 0.95514 0.97762 1.02605 0.86258 0.78520 0.83474 0.77831 1.21251 1.21700 1.21219 1.19201 0.91010 0.83870 1.43549 0.91064 1.42085 1.05780 0.99113 1.86790 1.20778 0.94845 0.85055 0.92005 0.91363 1.24332 0.96069 0.99723 1.02429 1.22361 1.00017 0.78892 0.93911 0.86482 1.46047 1.38919 1.10223 1.40664 1.18315 0.80675 0.87441 0.80153 1.90819 1.42219 1.55856 1.51472 1.20353 0.97918 0.93711 0.98202 1.21250 0.98368 0.92778 0.99108 1.21171 0.97549 0.95898 0.96563 1.20038 0.99599 0.93193 0.99774 1.18329 0.80055 0.86165 0.80535 1.43753 1.41642 1.11292 1.44755 1.90832 1.37535 1.80031 1.32954 1.21297 0.97188 0.91907 0.97979 1.21357 0.96641 0.95541 0.95203 1.23517 0.98428 0.98222 0.92945 1.22538 0.99433 0.95559 0.97536 1.22910 0.97253 0.98207 0.99588 1.22546 0.97142 0.97117 0.97887 0.93328 0.77893 0.91253 0.90794 0.76859 0.84912 0.85032 0.76853 0.76275 0.83864 0.83600 0.91740 0.89368 0.90929 0.91893 0.89521 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.70 13.06 55.49 0.72 -26.97 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.25 -6.61 9.97 -15.06 -0.15 -6.76 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.70 -16.85 5.09 -52.99 -0.27 -17.12 16 10 C 0.19 3.49 4.36 -67.48 -0.29 3.19 16 11 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 12 C -0.18 -3.11 7.68 -25.75 -0.20 -3.30 16 13 C 0.15 2.41 4.03 -67.48 -0.27 2.13 16 14 H 0.12 2.28 7.47 -51.93 -0.39 1.89 16 15 N -0.71 -8.83 5.23 -54.25 -0.28 -9.12 16 16 C 0.55 7.70 7.78 -12.24 -0.10 7.60 16 17 O -0.53 -9.72 15.94 5.34 0.09 -9.64 16 18 C -0.10 -1.05 5.88 -104.89 -0.62 -1.67 16 19 C -0.10 -0.71 9.53 -39.24 -0.37 -1.09 16 20 C -0.09 -0.56 9.53 -39.24 -0.37 -0.94 16 21 C -0.12 -1.01 5.88 -104.90 -0.62 -1.63 16 22 C 0.56 4.84 8.05 -12.25 -0.10 4.75 16 23 N -0.85 -3.56 8.82 30.57 0.27 -3.29 16 24 O -0.54 -6.79 17.17 5.34 0.09 -6.70 16 25 C -0.06 -0.61 9.58 -39.24 -0.38 -0.99 16 26 C -0.07 -0.72 9.58 -39.25 -0.38 -1.10 16 27 C -0.13 -1.91 0.92 -154.71 -0.14 -2.06 16 28 C -0.11 -1.72 7.48 -26.28 -0.20 -1.92 16 29 C -0.14 -1.63 8.10 -25.64 -0.21 -1.84 16 30 C -0.11 -1.23 7.47 -26.18 -0.20 -1.42 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 32 H 0.39 10.05 7.81 -40.82 -0.32 9.73 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.39 3.68 4.75 -40.82 -0.19 3.49 16 36 H 0.13 0.67 6.39 -52.49 -0.34 0.34 16 37 H 0.13 0.30 6.39 -52.48 -0.34 -0.03 16 38 H 0.40 0.52 6.85 -40.82 -0.28 0.24 16 39 H 0.41 1.24 8.93 -40.82 -0.36 0.87 16 40 H 0.14 1.31 7.64 -52.49 -0.40 0.91 16 41 H 0.15 1.59 7.64 -52.49 -0.40 1.19 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.06 0.50 6.42 -51.93 -0.33 0.17 16 LS Contribution 389.01 15.07 5.86 5.86 Total: -1.00 -34.82 389.01 -9.50 -44.32 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -6.28 Total: 13.00 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -4.68 Total: -7.41 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: 0.44 Total: -56.50 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: 0.18 Total: -16.33 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.82 -9.50 -44.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078802449.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.877 kcal (2) G-P(sol) polarization free energy of solvation -34.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds