Wall clock time and date at job start Wed Apr 1 2020 02:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99690 * 2 1 4 4 H 1.48504 * 109.46624 * 239.99561 * 3 2 1 5 5 H 1.48495 * 109.47245 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47054 * 120.00233 * 3 2 1 7 7 C 1.38808 * 119.99610 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99554 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00468 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99961 * 180.02562 * 9 7 2 11 11 H 1.08992 * 112.88714 * 23.65238 * 10 9 7 12 12 C 1.54150 * 113.65762 * 252.22506 * 10 9 7 13 13 C 1.53952 * 87.22833 * 270.17011 * 12 10 9 14 14 H 1.08995 * 113.65681 * 89.86584 * 13 12 10 15 15 N 1.46494 * 113.66330 * 220.83213 * 13 12 10 16 16 C 1.34784 * 119.99635 * 253.98707 * 15 13 12 17 17 O 1.21521 * 120.00030 * 0.02562 * 16 15 13 18 18 C 1.48032 * 119.99762 * 179.97438 * 16 15 13 19 19 C 1.39553 * 120.00134 * 359.72962 * 18 16 15 20 20 C 1.37819 * 119.99990 * 179.71959 * 19 18 16 21 21 C 1.39555 * 119.99927 * 0.54897 * 20 19 18 22 22 C 1.48037 * 120.00274 * 179.70168 * 21 20 19 23 23 N 1.34782 * 119.99585 * 0.02562 * 22 21 20 24 24 O 1.21523 * 120.00099 * 180.02562 * 22 21 20 25 25 C 1.39559 * 120.00040 * 359.72606 * 21 20 19 26 26 C 1.37817 * 119.99664 * 359.97438 * 25 21 20 27 27 C 1.52906 * 113.66199 * 155.00446 * 10 9 7 28 28 C 1.52908 * 121.13325 * 215.38293 * 27 10 9 29 29 C 1.53949 * 86.78327 * 100.81865 * 28 27 10 30 30 C 1.52905 * 121.13459 * 323.94396 * 27 10 9 31 31 H 0.96999 * 120.00013 * 0.02562 * 1 2 3 32 32 H 0.96999 * 120.00073 * 0.02562 * 9 7 2 33 33 H 1.09005 * 113.57494 * 155.60122 * 12 10 9 34 34 H 1.08994 * 113.63987 * 24.75725 * 12 10 9 35 35 H 0.96995 * 120.00292 * 74.26140 * 15 13 12 36 36 H 1.08005 * 120.00026 * 359.97438 * 19 18 16 37 37 H 1.07999 * 120.00160 * 180.27273 * 20 19 18 38 38 H 0.96990 * 119.99911 * 0.02562 * 23 22 21 39 39 H 0.96996 * 119.99527 * 179.97438 * 23 22 21 40 40 H 1.08001 * 119.99880 * 179.97438 * 25 21 20 41 41 H 1.07999 * 119.99847 * 179.97438 * 26 25 21 42 42 H 1.09001 * 113.66448 * 215.28804 * 28 27 10 43 43 H 1.08997 * 113.66579 * 346.34339 * 28 27 10 44 44 H 1.09001 * 113.58022 * 270.13037 * 29 28 27 45 45 H 1.08997 * 113.58411 * 139.33713 * 29 28 27 46 46 H 1.09004 * 113.66854 * 13.65127 * 30 27 10 47 47 H 1.09003 * 113.66725 * 144.62203 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0581 -3.6568 0.0027 11 1 3.0665 -3.5636 0.4055 12 6 1.9941 -4.4092 -1.3411 13 6 0.7265 -5.1013 -0.8079 14 1 -0.1942 -4.5649 -1.0375 15 7 0.6524 -6.5269 -1.1367 16 6 -0.2005 -6.9556 -2.0883 17 8 -0.9077 -6.1594 -2.6737 18 6 -0.2750 -8.3961 -2.4210 19 6 0.5420 -9.3096 -1.7534 20 6 0.4685 -10.6514 -2.0591 21 6 -0.4146 -11.0953 -3.0443 22 6 -0.4889 -12.5358 -3.3773 23 7 0.2962 -13.4187 -2.7286 24 8 -1.2576 -12.9222 -4.2355 25 6 -1.2275 -10.1811 -3.7159 26 6 -1.1584 -8.8400 -3.4059 27 6 1.2656 -4.8224 0.5956 28 6 1.9581 -5.9168 1.4084 29 6 1.4401 -5.1916 2.6637 30 6 0.3199 -4.6147 1.7790 31 1 -0.4850 0.8400 -0.0004 32 1 0.3555 -2.3881 0.0016 33 1 2.8295 -5.0913 -1.4991 34 1 1.8093 -3.7602 -2.1970 35 1 1.2143 -7.1629 -0.6669 36 1 1.2288 -8.9655 -0.9942 37 1 1.0976 -11.3589 -1.5393 38 1 0.9094 -13.1103 -2.0434 39 1 0.2473 -14.3626 -2.9466 40 1 -1.9107 -10.5245 -4.4787 41 1 -1.7872 -8.1325 -3.9259 42 1 1.5260 -6.9073 1.2659 43 1 3.0441 -5.9097 1.3159 44 1 2.1269 -4.4362 3.0454 45 1 1.0790 -5.8667 3.4395 46 1 0.0973 -3.5673 1.9826 47 1 -0.5734 -5.2381 1.7398 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078802452.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:19 Heat of formation + Delta-G solvation = 10.802298 kcal Electronic energy + Delta-G solvation = -29175.433061 eV Core-core repulsion = 25131.677661 eV Total energy + Delta-G solvation = -4043.755400 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.90627 -40.39308 -39.31840 -37.85620 -35.10069 -34.35644 -34.23152 -32.65618 -31.41446 -31.28453 -29.59949 -25.79491 -25.57900 -24.27995 -24.21845 -23.06810 -22.59420 -21.49553 -20.41141 -20.29921 -18.95969 -18.14582 -17.56834 -17.18872 -16.97087 -16.17034 -15.52214 -15.41810 -15.25466 -15.18410 -14.87297 -14.81295 -14.55000 -14.19900 -13.97291 -13.89166 -13.13045 -12.93222 -12.74725 -12.71428 -12.49552 -12.21496 -11.98180 -11.66139 -11.55524 -11.43414 -10.92564 -10.84971 -10.77965 -10.59141 -10.23007 -10.22367 -10.12740 -9.96064 -9.88488 -9.60070 -9.52704 -9.48698 -9.43761 -8.89225 -8.67981 -7.03000 -5.81201 -3.11326 0.08228 0.89364 2.14964 2.94373 2.96484 3.13773 3.41870 3.46504 3.47690 3.58031 4.20172 4.24708 4.43213 4.48575 4.62248 4.72122 4.83660 4.85523 4.92644 4.97352 5.13703 5.20989 5.29655 5.40154 5.47815 5.60127 5.69521 5.74693 5.82265 5.88220 5.90037 5.91724 5.98026 6.01611 6.07169 6.16070 6.24437 6.33683 6.37933 6.53368 6.58908 6.66656 6.74775 6.79043 6.82900 7.03095 7.55572 7.66683 7.73243 8.22023 8.36669 9.47811 10.03361 10.37810 11.40583 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.021693 B = 0.002159 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.442836 B =12965.289380 C =13692.862374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.700 5.700 10 C 0.198 3.802 11 H 0.069 0.931 12 C -0.182 4.182 13 C 0.138 3.862 14 H 0.115 0.885 15 N -0.707 5.707 16 C 0.548 3.452 17 O -0.527 6.527 18 C -0.098 4.098 19 C -0.097 4.097 20 C -0.093 4.093 21 C -0.123 4.123 22 C 0.563 3.437 23 N -0.850 5.850 24 O -0.536 6.536 25 C -0.065 4.065 26 C -0.069 4.069 27 C -0.124 4.124 28 C -0.116 4.116 29 C -0.133 4.133 30 C -0.126 4.126 31 H 0.257 0.743 32 H 0.387 0.613 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.395 0.605 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.402 0.598 39 H 0.406 0.594 40 H 0.144 0.856 41 H 0.146 0.854 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.059 0.941 46 H 0.083 0.917 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.820 -26.339 0.653 26.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.206 4.206 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.337 5.337 10 C 0.084 3.916 11 H 0.087 0.913 12 C -0.224 4.224 13 C 0.034 3.966 14 H 0.133 0.867 15 N -0.357 5.357 16 C 0.334 3.666 17 O -0.404 6.404 18 C -0.102 4.102 19 C -0.115 4.115 20 C -0.112 4.112 21 C -0.126 4.126 22 C 0.349 3.651 23 N -0.415 5.415 24 O -0.413 6.413 25 C -0.084 4.084 26 C -0.088 4.088 27 C -0.126 4.126 28 C -0.154 4.154 29 C -0.170 4.170 30 C -0.163 4.163 31 H 0.067 0.933 32 H 0.222 0.778 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.231 0.769 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.231 0.769 39 H 0.237 0.763 40 H 0.161 0.839 41 H 0.164 0.836 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.077 0.923 46 H 0.102 0.898 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.862 -25.604 -0.325 25.765 hybrid contribution 0.749 0.256 0.460 0.915 sum 3.611 -25.348 0.135 25.604 Atomic orbital electron populations 1.69654 1.05109 1.25996 1.56813 1.24769 0.95521 0.97781 1.02514 0.86252 0.78524 0.83428 0.77847 1.21201 1.21687 1.21222 1.19191 0.91017 0.83801 1.43684 0.91038 1.42105 1.05826 0.99101 1.86712 1.20659 0.94546 0.84645 0.91724 0.91314 1.24342 0.96252 0.99688 1.02155 1.22488 0.99911 0.78799 0.95361 0.86702 1.46013 1.41056 1.10091 1.38579 1.18316 0.80474 0.87444 0.80400 1.90816 1.42646 1.55739 1.51172 1.20358 0.98056 0.93736 0.98020 1.21253 0.98333 0.92746 0.99192 1.21171 0.97624 0.95889 0.96505 1.20038 0.99964 0.93183 0.99443 1.18333 0.79772 0.86167 0.80810 1.43753 1.43798 1.11194 1.42706 1.90830 1.38256 1.80140 1.32119 1.21297 0.97077 0.91895 0.98108 1.21359 0.96643 0.95556 0.95200 1.23620 0.98539 0.98466 0.92008 1.22532 0.99849 0.96569 0.96454 1.22733 0.99005 0.99557 0.95717 1.22638 0.96042 1.02544 0.95116 0.93298 0.77828 0.91222 0.90800 0.76938 0.84887 0.85034 0.76855 0.76279 0.83867 0.83603 0.90893 0.91328 0.89984 0.92256 0.89816 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.56 13.06 55.49 0.72 -26.84 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.25 -6.60 9.97 -15.06 -0.15 -6.75 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 N -0.70 -16.76 4.85 -52.89 -0.26 -17.02 16 10 C 0.20 3.69 4.37 -67.38 -0.29 3.40 16 11 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 12 C -0.18 -3.10 7.70 -25.64 -0.20 -3.30 16 13 C 0.14 2.20 4.01 -67.48 -0.27 1.93 16 14 H 0.12 2.25 7.50 -51.93 -0.39 1.86 16 15 N -0.71 -8.89 5.23 -54.26 -0.28 -9.17 16 16 C 0.55 7.75 7.78 -12.24 -0.10 7.65 16 17 O -0.53 -9.79 15.95 5.35 0.09 -9.71 16 18 C -0.10 -1.06 5.88 -104.90 -0.62 -1.68 16 19 C -0.10 -0.72 9.53 -39.24 -0.37 -1.09 16 20 C -0.09 -0.57 9.53 -39.24 -0.37 -0.94 16 21 C -0.12 -1.02 5.88 -104.89 -0.62 -1.63 16 22 C 0.56 4.86 8.05 -12.24 -0.10 4.76 16 23 N -0.85 -3.58 8.82 30.57 0.27 -3.31 16 24 O -0.54 -6.80 17.17 5.35 0.09 -6.71 16 25 C -0.06 -0.62 9.58 -39.24 -0.38 -0.99 16 26 C -0.07 -0.73 9.58 -39.24 -0.38 -1.10 16 27 C -0.12 -1.85 0.92 -154.71 -0.14 -1.99 16 28 C -0.12 -1.31 7.15 -26.28 -0.19 -1.50 16 29 C -0.13 -1.68 8.08 -25.75 -0.21 -1.89 16 30 C -0.13 -1.92 7.62 -26.28 -0.20 -2.12 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.39 10.01 7.61 -40.82 -0.31 9.70 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 35 H 0.39 3.67 4.99 -40.82 -0.20 3.46 16 36 H 0.13 0.67 6.39 -52.48 -0.34 0.33 16 37 H 0.13 0.30 6.39 -52.49 -0.34 -0.03 16 38 H 0.40 0.53 6.85 -40.82 -0.28 0.25 16 39 H 0.41 1.24 8.93 -40.82 -0.36 0.88 16 40 H 0.14 1.31 7.64 -52.49 -0.40 0.91 16 41 H 0.15 1.60 7.64 -52.49 -0.40 1.20 16 42 H 0.07 0.66 6.99 -51.93 -0.36 0.30 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 47 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 388.67 15.07 5.86 5.86 Total: -1.00 -34.71 388.67 -9.49 -44.19 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -6.28 Total: 13.31 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -4.67 Total: -7.60 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: 0.45 Total: -56.34 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: 0.18 Total: -16.41 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.71 -9.49 -44.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078802452.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.997 kcal (2) G-P(sol) polarization free energy of solvation -34.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds