Wall clock time and date at job start Wed Apr 1 2020 02:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99924 * 2 1 4 4 H 1.48501 * 109.47151 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47286 * 299.99944 * 3 2 1 6 6 H 1.48496 * 109.46977 * 59.99949 * 3 2 1 7 7 C 1.38814 * 120.00313 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99971 * 175.74053 * 7 2 1 9 9 N 1.36938 * 119.99603 * 355.74241 * 7 2 1 10 10 C 1.47443 * 121.96519 * 216.45868 * 9 7 2 11 11 C 1.52778 * 107.14515 * 238.38926 * 10 9 7 12 12 C 1.53068 * 110.81036 * 301.13118 * 11 10 9 13 13 H 1.08999 * 112.49810 * 288.17332 * 12 11 10 14 14 C 1.55912 * 106.85412 * 163.75208 * 12 11 10 15 15 N 1.47639 * 104.42003 * 283.02238 * 14 12 11 16 16 C 1.34779 * 125.73314 * 155.04844 * 15 14 12 17 17 O 1.21541 * 120.00096 * 354.43018 * 16 15 14 18 18 C 1.47864 * 119.99994 * 174.43138 * 16 15 14 19 19 C 1.39710 * 120.06876 * 7.31781 * 18 16 15 20 20 C 1.38058 * 120.13916 * 179.74223 * 19 18 16 21 21 C 1.38103 * 120.29903 * 0.51132 * 20 19 18 22 22 C 1.39667 * 120.14156 * 359.76708 * 21 20 19 23 23 C 1.47859 * 120.07360 * 179.97438 * 22 21 20 24 24 N 1.34774 * 119.99814 * 0.02795 * 23 22 21 25 25 O 1.21550 * 120.00188 * 180.02562 * 23 22 21 26 26 C 1.39285 * 120.07426 * 187.59388 * 18 16 15 27 27 C 1.47462 * 108.53165 * 335.02692 * 15 14 12 28 28 C 1.53323 * 106.45127 * 0.55998 * 27 15 14 29 29 H 1.08997 * 108.05404 * 268.77398 * 28 27 15 30 30 C 1.46713 * 121.32883 * 35.13981 * 9 7 2 31 31 H 0.96997 * 119.99694 * 359.97438 * 1 2 3 32 32 H 1.09002 * 111.06351 * 118.48267 * 10 9 7 33 33 H 1.08998 * 109.16263 * 357.23524 * 10 9 7 34 34 H 1.09002 * 109.21009 * 180.78871 * 11 10 9 35 35 H 1.09000 * 109.20673 * 61.47660 * 11 10 9 36 36 H 1.09004 * 110.44687 * 41.75759 * 14 12 11 37 37 H 1.09004 * 110.44791 * 164.28771 * 14 12 11 38 38 H 1.07996 * 119.93177 * 359.97438 * 19 18 16 39 39 H 1.07999 * 119.85363 * 180.25509 * 20 19 18 40 40 H 1.07992 * 119.93179 * 179.74503 * 21 20 19 41 41 H 0.97000 * 120.00358 * 359.97438 * 24 23 22 42 42 H 0.97009 * 120.00159 * 180.02562 * 24 23 22 43 43 H 1.07996 * 120.14859 * 359.97438 * 26 18 16 44 44 H 1.08997 * 110.05830 * 241.31196 * 27 15 14 45 45 H 1.08998 * 110.05504 * 119.81301 * 27 15 14 46 46 H 1.09008 * 109.16415 * 7.25801 * 30 9 7 47 47 H 1.08998 * 109.16565 * 248.06329 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0881 -1.2034 -0.0689 9 7 1.3285 -2.3864 0.0891 10 6 1.8576 -3.5372 0.8437 11 6 1.9734 -4.7036 -0.1362 12 6 0.6116 -5.0335 -0.7523 13 1 -0.0642 -5.5080 -0.0407 14 6 0.8854 -5.9150 -2.0088 15 7 1.3451 -4.9589 -3.0356 16 6 2.1268 -5.2548 -4.0929 17 8 2.5977 -6.3694 -4.2075 18 6 2.4114 -4.2234 -5.1135 19 6 2.0007 -2.9039 -4.9088 20 6 2.2704 -1.9387 -5.8583 21 6 2.9378 -2.2719 -7.0205 22 6 3.3489 -3.5885 -7.2403 23 6 4.0629 -3.9437 -8.4854 24 7 4.3182 -2.9964 -9.4094 25 8 4.4197 -5.0900 -8.6755 26 6 3.0846 -4.5665 -6.2837 27 6 0.8049 -3.6260 -2.7102 28 6 -0.0059 -3.7894 -1.4192 29 1 -1.0372 -4.0110 -1.6937 30 6 0.0159 -2.5600 -0.5431 31 1 -0.4849 0.8400 0.0004 32 1 1.1916 -3.8082 1.6630 33 1 2.8429 -3.2854 1.2360 34 1 2.3499 -5.5797 0.3918 35 1 2.6711 -4.4370 -0.9301 36 1 1.6629 -6.6491 -1.7968 37 1 -0.0295 -6.4110 -2.3328 38 1 1.4743 -2.6376 -4.0041 39 1 1.9543 -0.9192 -5.6934 40 1 3.1421 -1.5129 -7.7611 41 1 4.0333 -2.0816 -9.2579 42 1 4.7864 -3.2294 -10.2265 43 1 3.4007 -5.5859 -6.4486 44 1 0.1587 -3.2776 -3.5159 45 1 1.6205 -2.9203 -2.5528 46 1 -0.2071 -1.6833 -1.1513 47 1 -0.7441 -2.6595 0.2318 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088016721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:55 Heat of formation + Delta-G solvation = 4.093992 kcal Electronic energy + Delta-G solvation = -30654.976111 eV Core-core repulsion = 26610.929817 eV Total energy + Delta-G solvation = -4044.046294 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.78949 -39.92569 -38.52543 -37.58687 -35.33180 -34.13162 -32.94361 -31.54616 -31.18913 -30.87001 -30.17157 -27.52897 -26.03912 -24.48647 -24.17178 -22.84205 -21.81419 -21.28992 -20.86891 -19.73793 -18.65162 -18.27067 -17.08760 -16.99239 -16.50251 -15.97191 -15.81422 -15.42175 -14.98468 -14.84610 -14.46327 -14.34834 -14.08724 -13.87308 -13.63397 -13.57804 -13.46111 -13.10472 -12.60673 -12.53072 -12.41176 -12.09427 -11.81671 -11.53800 -11.36578 -11.22688 -10.95277 -10.83870 -10.66442 -10.45478 -10.31374 -10.20041 -10.02738 -10.00476 -9.74180 -9.53179 -9.43507 -9.17604 -9.14495 -8.57391 -8.39831 -6.64796 -5.91287 -3.44264 0.53987 0.96875 2.49746 3.02718 3.09572 3.26953 3.29470 3.36879 3.38127 3.82700 4.36970 4.41774 4.52205 4.70449 4.77959 4.92492 4.99320 5.13662 5.19767 5.26575 5.29088 5.40159 5.47341 5.56566 5.72834 5.79151 5.82718 5.88585 6.00094 6.01854 6.03597 6.16740 6.19785 6.29841 6.33889 6.39392 6.46998 6.52857 6.61493 6.65915 6.68645 6.80024 6.97839 7.02608 7.22333 7.61453 7.68234 7.70194 7.98247 8.28108 8.39889 9.12662 9.70236 10.35651 11.14663 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.010810 B = 0.003719 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.677633 B = 7526.361626 C = 9469.301679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.012 3.988 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.250 4.250 8 H 0.065 0.935 9 N -0.590 5.590 10 C 0.140 3.860 11 C -0.126 4.126 12 C -0.087 4.087 13 H 0.091 0.909 14 C 0.107 3.893 15 N -0.605 5.605 16 C 0.572 3.428 17 O -0.545 6.545 18 C -0.135 4.135 19 C -0.090 4.090 20 C -0.131 4.131 21 C -0.066 4.066 22 C -0.157 4.157 23 C 0.567 3.433 24 N -0.853 5.853 25 O -0.538 6.538 26 C -0.003 4.003 27 C 0.099 3.901 28 C -0.114 4.114 29 H 0.064 0.936 30 C 0.171 3.829 31 H 0.255 0.745 32 H 0.023 0.977 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.175 0.825 39 H 0.139 0.861 40 H 0.128 0.872 41 H 0.401 0.599 42 H 0.404 0.596 43 H 0.147 0.853 44 H 0.070 0.930 45 H 0.095 0.905 46 H 0.103 0.897 47 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.845 -2.832 -12.007 12.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.187 4.187 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.380 4.380 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.014 3.986 11 C -0.166 4.166 12 C -0.106 4.106 13 H 0.109 0.891 14 C -0.015 4.015 15 N -0.338 5.338 16 C 0.361 3.639 17 O -0.424 6.424 18 C -0.138 4.138 19 C -0.107 4.107 20 C -0.149 4.149 21 C -0.085 4.085 22 C -0.160 4.160 23 C 0.353 3.647 24 N -0.417 5.417 25 O -0.415 6.415 26 C -0.022 4.022 27 C -0.022 4.022 28 C -0.135 4.135 29 H 0.082 0.918 30 C 0.044 3.956 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.192 0.808 39 H 0.156 0.844 40 H 0.146 0.854 41 H 0.230 0.770 42 H 0.235 0.765 43 H 0.164 0.836 44 H 0.087 0.913 45 H 0.113 0.887 46 H 0.121 0.879 47 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 1.211 -4.061 -12.093 12.815 hybrid contribution 0.407 1.414 -0.304 1.502 sum 1.618 -2.648 -12.398 12.780 Atomic orbital electron populations 1.69873 1.05308 1.25476 1.53980 1.25337 0.95517 0.98170 0.99640 0.86277 0.79538 0.83962 0.77392 1.20220 1.21626 1.21462 1.19136 0.90774 0.82759 1.45298 0.91782 1.44033 1.20030 1.10475 1.56696 1.20989 0.97606 0.87843 0.92157 1.21967 0.95589 0.98923 1.00079 1.22307 0.98039 0.95245 0.95027 0.89080 1.22621 0.99050 0.92187 0.87635 1.48506 1.49135 1.11427 1.24719 1.17819 0.78108 0.87252 0.80674 1.90758 1.51722 1.23039 1.76912 1.19878 1.03573 0.94339 0.96027 1.23310 0.94794 0.91795 1.00813 1.21196 0.99694 1.00366 0.93674 1.21474 0.95122 0.94623 0.97290 1.19737 1.05339 0.94709 0.96247 1.18234 0.78281 0.84866 0.83291 1.43735 1.62597 1.12513 1.22837 1.90835 1.52355 1.19752 1.78556 1.21326 0.90916 1.00079 0.89923 1.22531 0.98388 0.84206 0.97112 1.22226 0.97588 0.98857 0.94864 0.91773 1.20342 0.87282 0.93734 0.94216 0.93460 0.95914 0.92817 0.93356 0.92171 0.90570 0.91884 0.80821 0.84365 0.85430 0.76952 0.76450 0.83560 0.91255 0.88687 0.87943 0.95975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.50 10.66 55.49 0.59 -22.91 16 2 C 0.01 0.31 5.33 -17.43 -0.09 0.22 16 3 Si 0.90 19.97 29.56 -169.99 -5.02 14.95 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.25 -6.21 9.67 -15.06 -0.15 -6.35 16 8 H 0.06 1.61 7.83 -52.49 -0.41 1.20 16 9 N -0.59 -13.16 2.86 -173.64 -0.50 -13.65 16 10 C 0.14 2.71 6.57 -3.64 -0.02 2.69 16 11 C -0.13 -2.09 4.99 -26.81 -0.13 -2.23 16 12 C -0.09 -1.31 3.67 -88.47 -0.32 -1.63 16 13 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 14 C 0.11 1.58 6.23 -1.86 -0.01 1.57 16 15 N -0.61 -9.61 2.89 -175.42 -0.51 -10.12 16 16 C 0.57 9.88 7.81 -12.32 -0.10 9.78 16 17 O -0.55 -10.94 16.60 5.33 0.09 -10.85 16 18 C -0.14 -2.05 5.87 -105.02 -0.62 -2.66 16 19 C -0.09 -1.19 8.63 -39.10 -0.34 -1.53 16 20 C -0.13 -1.42 10.02 -39.70 -0.40 -1.82 16 21 C -0.07 -0.64 9.54 -39.10 -0.37 -1.01 16 22 C -0.16 -1.93 5.87 -105.02 -0.62 -2.54 16 23 C 0.57 6.87 8.05 -12.32 -0.10 6.77 16 24 N -0.85 -6.07 8.82 30.53 0.27 -5.81 16 25 O -0.54 -8.76 17.18 5.32 0.09 -8.67 16 26 C 0.00 -0.04 9.13 -38.78 -0.35 -0.39 16 27 C 0.10 1.53 3.89 -3.35 -0.01 1.52 16 28 C -0.11 -1.85 2.70 -90.91 -0.25 -2.10 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 30 C 0.17 3.52 4.58 -4.94 -0.02 3.49 16 31 H 0.25 6.48 8.31 -40.82 -0.34 6.14 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.05 1.05 7.96 -51.93 -0.41 0.63 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 1.11 7.20 -51.93 -0.37 0.74 16 36 H 0.08 1.17 7.84 -51.93 -0.41 0.76 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.18 2.37 2.73 -58.12 -0.16 2.22 16 39 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 40 H 0.13 0.72 6.39 -52.49 -0.34 0.38 16 41 H 0.40 1.67 6.85 -40.82 -0.28 1.39 16 42 H 0.40 2.30 8.93 -40.82 -0.36 1.94 16 43 H 0.15 2.39 7.25 -52.49 -0.38 2.01 16 44 H 0.07 0.95 6.75 -51.93 -0.35 0.60 16 45 H 0.10 1.66 6.53 -51.93 -0.34 1.32 16 46 H 0.10 2.36 5.96 -51.92 -0.31 2.05 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 369.87 15.07 5.57 5.57 Total: -1.00 -31.74 369.87 -9.53 -41.28 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -6.22 Total: 6.44 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -3.90 Total: 3.77 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: -0.14 Total: -52.49 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: 0.18 Total: -19.52 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.74 -9.53 -41.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088016721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.373 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds