Wall clock time and date at job start Wed Apr 1 2020 02:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99852 * 2 1 4 4 H 1.48503 * 109.47407 * 240.00513 * 3 2 1 5 5 H 1.48504 * 109.46711 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47236 * 119.99990 * 3 2 1 7 7 C 1.38807 * 120.00570 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00253 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99856 * 359.97438 * 7 2 1 10 10 C 1.50241 * 130.84206 * 359.97438 * 9 7 2 11 11 H 1.09004 * 115.85092 * 359.66241 * 10 9 7 12 12 C 1.55840 * 101.05292 * 233.99041 * 10 9 7 13 13 C 1.54852 * 103.44510 * 327.05603 * 12 10 9 14 14 C 1.50243 * 130.83794 * 179.97438 * 9 7 2 15 15 H 1.08993 * 116.45935 * 359.97438 * 14 9 7 16 16 C 1.55850 * 101.04937 * 233.94776 * 14 9 7 17 17 H 1.08995 * 110.62117 * 85.71805 * 16 14 9 18 18 N 1.46499 * 110.62455 * 208.57563 * 16 14 9 19 19 C 1.34787 * 119.99537 * 274.06751 * 18 16 14 20 20 O 1.21271 * 120.00179 * 0.02562 * 19 18 16 21 21 C 1.50708 * 119.99279 * 180.02562 * 19 18 16 22 22 C 1.50700 * 109.46465 * 179.97438 * 21 19 18 23 23 C 1.38358 * 119.85520 * 90.00265 * 22 21 19 24 24 C 1.37958 * 120.15116 * 179.72100 * 23 22 21 25 25 C 1.39574 * 119.84967 * 0.25341 * 24 23 22 26 26 C 1.47845 * 120.14730 * 179.97438 * 25 24 23 27 27 N 1.34778 * 120.00288 * 180.02562 * 26 25 24 28 28 O 1.21547 * 119.99788 * 359.97438 * 26 25 24 29 29 C 1.39581 * 119.71254 * 0.02562 * 25 24 23 30 30 C 1.37959 * 119.85078 * 359.97438 * 29 25 24 31 31 C 1.54850 * 103.59087 * 327.14497 * 16 14 9 32 32 H 0.96996 * 120.00467 * 359.97438 * 1 2 3 33 33 H 1.09000 * 110.62568 * 208.56905 * 12 10 9 34 34 H 1.08994 * 110.63065 * 85.54409 * 12 10 9 35 35 H 1.08999 * 110.63335 * 241.51604 * 13 12 10 36 36 H 1.09002 * 110.76638 * 118.55129 * 13 12 10 37 37 H 0.96996 * 120.00251 * 94.06748 * 18 16 14 38 38 H 1.09003 * 109.47193 * 60.00656 * 21 19 18 39 39 H 1.08994 * 109.47497 * 299.99515 * 21 19 18 40 40 H 1.08007 * 119.92495 * 359.97438 * 23 22 21 41 41 H 1.07999 * 120.07977 * 180.27786 * 24 23 22 42 42 H 0.96997 * 119.99737 * 0.02562 * 27 26 25 43 43 H 0.96994 * 119.99903 * 179.97438 * 27 26 25 44 44 H 1.07994 * 120.07411 * 179.97438 * 29 25 24 45 45 H 1.07998 * 119.92754 * 180.02562 * 30 29 25 46 46 H 1.08991 * 110.63016 * 118.40884 * 31 16 14 47 47 H 1.08999 * 110.62324 * 241.43373 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6966 -1.2126 5 1 1.2850 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3258 -2.3880 -0.0005 10 6 -0.1498 -2.6707 0.0005 11 1 -0.8012 -1.7967 0.0072 12 6 -0.2731 -3.6106 1.2374 13 6 1.0680 -4.3848 1.2363 14 6 1.8190 -3.8071 -0.0016 15 1 2.9001 -3.9455 -0.0029 16 6 1.0658 -4.3843 -1.2379 17 1 1.6240 -4.1883 -2.1533 18 7 0.8323 -5.8213 -1.0753 19 6 1.7820 -6.7042 -1.4432 20 8 2.8299 -6.3089 -1.9084 21 6 1.5415 -8.1826 -1.2765 22 6 2.7479 -8.9453 -1.7601 23 6 3.7712 -9.2464 -0.8789 24 6 4.8757 -9.9494 -1.3137 25 6 4.9619 -10.3524 -2.6472 26 6 6.1429 -11.1055 -3.1204 27 7 6.2234 -11.4928 -4.4088 28 8 7.0417 -11.3746 -2.3476 29 6 3.9288 -10.0404 -3.5324 30 6 2.8298 -9.3369 -3.0846 31 6 -0.2755 -3.6105 -1.2406 32 1 -0.4851 0.8400 0.0004 33 1 -1.1121 -4.2959 1.1168 34 1 -0.3797 -3.0287 2.1528 35 1 0.8942 -5.4540 1.1152 36 1 1.6279 -4.1892 2.1509 37 1 -0.0056 -6.1375 -0.7029 38 1 0.6686 -8.4767 -1.8592 39 1 1.3679 -8.4061 -0.2239 40 1 3.7032 -8.9340 0.1528 41 1 5.6717 -10.1877 -0.6238 42 1 5.5067 -11.2771 -5.0257 43 1 6.9984 -11.9866 -4.7193 44 1 3.9897 -10.3489 -4.5656 45 1 2.0296 -9.0952 -3.7684 46 1 -0.3814 -3.0287 -2.1561 47 1 -1.1144 -4.2961 -1.1209 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096636589.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:00 Heat of formation + Delta-G solvation = -2.221951 kcal Electronic energy + Delta-G solvation = -29406.885251 eV Core-core repulsion = 25362.565077 eV Total energy + Delta-G solvation = -4044.320174 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.51681 -39.96250 -38.84581 -37.89928 -34.24361 -33.93329 -32.90751 -32.30170 -31.14285 -29.47481 -29.08641 -28.48184 -27.08594 -24.28413 -23.42282 -22.91987 -21.44768 -20.87377 -20.29619 -19.50857 -18.60349 -18.46629 -17.25221 -17.15041 -16.74114 -15.96909 -15.61159 -15.29888 -15.05579 -14.98211 -14.91210 -14.70459 -14.15778 -13.92680 -13.79253 -13.65015 -13.49463 -12.61481 -12.46668 -12.31655 -12.05449 -11.87700 -11.76114 -11.49145 -11.26481 -11.06017 -10.92722 -10.91727 -10.83168 -10.36084 -10.23125 -10.12262 -10.06173 -9.87732 -9.72466 -9.39645 -9.28557 -9.19781 -8.95599 -8.94292 -8.52486 -6.92897 -5.73947 -3.11927 0.57672 1.17284 2.57600 2.82324 3.18084 3.37563 3.40898 3.44137 3.45824 3.74216 4.34535 4.45009 4.47203 4.58569 4.72649 4.96832 4.99805 5.09758 5.18935 5.25473 5.36141 5.37940 5.53419 5.59949 5.75795 5.78903 5.83066 5.94640 5.99904 6.04860 6.08390 6.09226 6.28037 6.30306 6.31570 6.42149 6.51312 6.57536 6.64134 6.66241 6.79672 6.94544 6.97805 6.98088 7.25036 7.51159 7.72137 7.82200 7.92512 8.15573 8.47429 9.09425 9.71965 10.52098 11.35646 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.018607 B = 0.002211 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.415814 B =12661.099952 C =13361.794614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.012 4.012 3 Si 0.917 3.083 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.210 4.210 8 H 0.078 0.922 9 N -0.589 5.589 10 C 0.154 3.846 11 H 0.155 0.845 12 C -0.137 4.137 13 C -0.130 4.130 14 C 0.128 3.872 15 H 0.085 0.915 16 C 0.128 3.872 17 H 0.080 0.920 18 N -0.713 5.713 19 C 0.509 3.491 20 O -0.533 6.533 21 C -0.111 4.111 22 C -0.030 4.030 23 C -0.112 4.112 24 C -0.056 4.056 25 C -0.147 4.147 26 C 0.566 3.434 27 N -0.853 5.853 28 O -0.542 6.542 29 C -0.085 4.085 30 C -0.114 4.114 31 C -0.141 4.141 32 H 0.254 0.746 33 H 0.045 0.955 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.395 0.605 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.130 0.870 41 H 0.136 0.864 42 H 0.401 0.599 43 H 0.404 0.596 44 H 0.125 0.875 45 H 0.128 0.872 46 H 0.065 0.935 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.550 -22.867 -6.318 23.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.207 4.207 3 Si 0.748 3.252 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.338 4.338 8 H 0.096 0.904 9 N -0.310 5.310 10 C 0.047 3.953 11 H 0.171 0.829 12 C -0.176 4.176 13 C -0.170 4.170 14 C 0.019 3.981 15 H 0.103 0.897 16 C 0.023 3.977 17 H 0.099 0.901 18 N -0.364 5.364 19 C 0.294 3.706 20 O -0.410 6.410 21 C -0.151 4.151 22 C -0.031 4.031 23 C -0.130 4.130 24 C -0.074 4.074 25 C -0.150 4.150 26 C 0.352 3.648 27 N -0.417 5.417 28 O -0.420 6.420 29 C -0.103 4.103 30 C -0.132 4.132 31 C -0.180 4.180 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.229 0.771 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.148 0.852 41 H 0.154 0.846 42 H 0.231 0.769 43 H 0.235 0.765 44 H 0.142 0.858 45 H 0.146 0.854 46 H 0.084 0.916 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.724 -22.282 -6.033 23.096 hybrid contribution 0.003 0.558 -0.328 0.647 sum 0.727 -21.725 -6.361 22.648 Atomic orbital electron populations 1.69418 1.04983 1.25107 1.57762 1.24693 0.95657 0.97512 1.02881 0.86104 0.78378 0.82827 0.77925 1.21208 1.21575 1.21241 1.19021 0.90361 0.81880 1.42558 0.90373 1.46459 1.01579 0.98800 1.84140 1.23827 0.87687 0.95183 0.88584 0.82872 1.23048 0.95097 0.98190 1.01304 1.22918 0.97616 0.97511 0.98940 1.23186 0.96202 0.86104 0.92580 0.89738 1.22631 0.98060 0.76842 1.00216 0.90145 1.46256 1.18774 1.07301 1.64045 1.20320 0.84312 0.87583 0.78408 1.90743 1.25677 1.80332 1.44207 1.20805 0.97518 0.92519 1.04217 1.19561 0.94891 0.94859 0.93741 1.21026 0.93239 0.98457 1.00269 1.21219 0.97368 0.94412 0.94449 1.19815 0.95581 1.04079 0.95492 1.18338 0.86177 0.78210 0.82057 1.43755 1.26230 1.60629 1.11043 1.90812 1.40078 1.56254 1.54871 1.21169 0.93147 0.97368 0.98639 1.20914 0.98570 0.98560 0.95115 1.23337 0.93925 0.98441 1.02343 0.93510 0.93656 0.92673 0.93128 0.93136 0.77091 0.87846 0.87702 0.85204 0.84642 0.76949 0.76523 0.85757 0.85438 0.91640 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.97 10.47 55.49 0.58 -25.39 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.92 21.98 29.55 -169.99 -5.02 16.96 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.21 -5.78 10.59 -15.06 -0.16 -5.94 16 8 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 9 N -0.59 -14.51 2.99 -145.58 -0.43 -14.95 16 10 C 0.15 3.38 4.72 -62.61 -0.30 3.08 16 11 H 0.15 3.87 5.52 -51.93 -0.29 3.59 16 12 C -0.14 -2.55 6.44 -24.24 -0.16 -2.71 16 13 C -0.13 -2.32 6.33 -24.21 -0.15 -2.48 16 14 C 0.13 2.64 5.35 -62.77 -0.34 2.31 16 15 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 16 C 0.13 2.30 3.06 -65.43 -0.20 2.10 16 17 H 0.08 1.65 7.70 -51.93 -0.40 1.25 16 18 N -0.71 -9.49 3.63 -51.39 -0.19 -9.68 16 19 C 0.51 6.88 7.82 -10.98 -0.09 6.80 16 20 O -0.53 -9.74 15.76 5.57 0.09 -9.65 16 21 C -0.11 -0.97 5.82 -29.03 -0.17 -1.14 16 22 C -0.03 -0.31 4.38 -104.53 -0.46 -0.76 16 23 C -0.11 -1.19 9.68 -39.64 -0.38 -1.58 16 24 C -0.06 -0.63 9.60 -39.19 -0.38 -1.00 16 25 C -0.15 -1.55 5.87 -104.97 -0.62 -2.16 16 26 C 0.57 6.12 8.05 -12.33 -0.10 6.02 16 27 N -0.85 -5.37 8.82 30.53 0.27 -5.10 16 28 O -0.54 -7.97 17.18 5.32 0.09 -7.88 16 29 C -0.08 -0.72 9.54 -39.18 -0.37 -1.10 16 30 C -0.11 -1.06 9.68 -39.64 -0.38 -1.44 16 31 C -0.14 -2.56 6.23 -24.05 -0.15 -2.71 16 32 H 0.25 6.97 8.31 -40.82 -0.34 6.64 16 33 H 0.04 0.70 7.83 -51.93 -0.41 0.29 16 34 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.05 0.75 6.48 -51.93 -0.34 0.41 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.39 4.09 8.02 -40.82 -0.33 3.76 16 38 H 0.10 0.64 8.08 -51.93 -0.42 0.22 16 39 H 0.10 0.71 8.08 -51.93 -0.42 0.29 16 40 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 41 H 0.14 1.50 7.65 -52.49 -0.40 1.10 16 42 H 0.40 1.41 6.86 -40.82 -0.28 1.13 16 43 H 0.40 2.00 8.93 -40.82 -0.36 1.63 16 44 H 0.12 0.63 6.41 -52.49 -0.34 0.29 16 45 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 46 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 47 H 0.05 0.81 7.35 -51.93 -0.38 0.43 16 LS Contribution 382.13 15.07 5.76 5.76 Total: -1.00 -35.13 382.13 -9.79 -44.93 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -6.44 Total: 8.15 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -4.49 Total: -3.14 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.23 Total: -55.12 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: 0.18 Total: -17.53 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.13 -9.79 -44.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096636589.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.705 kcal (2) G-P(sol) polarization free energy of solvation -35.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds