Wall clock time and date at job start Wed Apr 1 2020 02:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86791 * 120.00208 * 2 1 4 4 H 1.48509 * 109.47312 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47140 * 299.99434 * 3 2 1 6 6 H 1.48495 * 109.47406 * 59.99785 * 3 2 1 7 7 C 1.38820 * 119.99578 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99792 * 156.15288 * 7 2 1 9 9 N 1.36932 * 119.99909 * 336.14760 * 7 2 1 10 10 C 1.48339 * 128.19278 * 159.00904 * 9 7 2 11 11 C 1.54471 * 104.30772 * 138.23837 * 10 9 7 12 12 H 1.09000 * 111.92874 * 263.69087 * 11 10 9 13 13 C 1.54140 * 108.79746 * 139.51790 * 11 10 9 14 14 C 1.54838 * 104.35060 * 224.04481 * 13 11 10 15 15 C 1.54837 * 102.73126 * 38.22671 * 14 13 11 16 16 C 1.55090 * 104.63362 * 25.19362 * 11 10 9 17 17 N 1.46495 * 112.00160 * 237.59879 * 16 11 10 18 18 C 1.34783 * 120.00118 * 180.02562 * 17 16 11 19 19 O 1.21548 * 119.99629 * 359.97438 * 18 17 16 20 20 C 1.47854 * 120.00045 * 180.02562 * 18 17 16 21 21 C 1.39708 * 120.07578 * 359.72693 * 20 18 17 22 22 C 1.38059 * 120.14495 * 179.73618 * 21 20 18 23 23 C 1.38096 * 120.29319 * 0.51707 * 22 21 20 24 24 C 1.39661 * 120.15136 * 359.76224 * 23 22 21 25 25 C 1.47858 * 120.07792 * 179.97438 * 24 23 22 26 26 N 1.34779 * 120.00034 * 0.02562 * 25 24 23 27 27 O 1.21556 * 119.99936 * 180.02562 * 25 24 23 28 28 C 1.39296 * 120.07404 * 179.97438 * 20 18 17 29 29 C 1.48339 * 128.20016 * 338.69518 * 9 7 2 30 30 H 0.97004 * 120.00800 * 174.28085 * 1 2 3 31 31 H 1.09007 * 110.46979 * 256.94493 * 10 9 7 32 32 H 1.09003 * 110.46781 * 19.40425 * 10 9 7 33 33 H 1.09007 * 110.46032 * 342.76393 * 13 11 10 34 34 H 1.09000 * 110.45723 * 105.32634 * 13 11 10 35 35 H 1.08997 * 110.76019 * 156.53984 * 14 13 11 36 36 H 1.09000 * 110.75248 * 279.92126 * 14 13 11 37 37 H 1.08997 * 110.45213 * 80.48982 * 15 14 13 38 38 H 1.08993 * 110.45679 * 203.06379 * 15 14 13 39 39 H 0.97000 * 119.99889 * 0.02562 * 17 16 11 40 40 H 1.08002 * 119.92489 * 359.97438 * 21 20 18 41 41 H 1.08002 * 119.85028 * 180.25478 * 22 21 20 42 42 H 1.08002 * 119.92307 * 179.73719 * 23 22 21 43 43 H 0.97003 * 119.99441 * 359.97438 * 26 25 24 44 44 H 0.97000 * 120.00145 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.14585 * 359.97438 * 28 20 18 46 46 H 1.09002 * 110.46628 * 340.46917 * 29 9 7 47 47 H 1.09003 * 110.46437 * 103.05645 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2023 0.0005 8 1 3.0209 -1.2424 -0.3776 9 7 1.4131 -2.3372 0.4806 10 6 1.7693 -3.7497 0.2004 11 6 1.6526 -4.4520 1.5713 12 1 2.6171 -4.5271 2.0735 13 6 1.0014 -5.8341 1.3675 14 6 -0.0345 -5.9429 2.5131 15 6 -0.5974 -4.5032 2.6020 16 6 0.6468 -3.5843 2.3717 17 7 1.2239 -3.0895 3.6240 18 6 0.4869 -2.3173 4.4469 19 8 -0.6564 -2.0310 4.1497 20 6 1.0696 -1.8174 5.7105 21 6 2.3820 -2.1493 6.0559 22 6 2.9293 -1.6789 7.2328 23 6 2.1811 -0.8868 8.0813 24 6 0.8660 -0.5523 7.7510 25 6 0.0662 0.2955 8.6609 26 7 0.6063 0.7467 9.8103 27 8 -1.0785 0.5854 8.3723 28 6 0.3095 -1.0188 6.5618 29 6 0.2611 -2.4454 1.4089 30 1 -0.4851 -0.8358 -0.0837 31 1 1.0685 -4.1855 -0.5119 32 1 2.7888 -3.8176 -0.1793 33 1 0.5044 -5.8820 0.3986 34 1 1.7483 -6.6234 1.4530 35 1 -0.8225 -6.6506 2.2556 36 1 0.4508 -6.2263 3.4471 37 1 -1.3486 -4.3396 1.8293 38 1 -1.0194 -4.3195 3.5900 39 1 2.1364 -3.3176 3.8609 40 1 2.9709 -2.7721 5.3988 41 1 3.9457 -1.9350 7.4931 42 1 2.6138 -0.5256 9.0025 43 1 1.5196 0.5150 10.0407 44 1 0.0818 1.3032 10.4071 45 1 -0.7068 -0.7623 6.3013 46 1 0.1252 -1.5135 1.9578 47 1 -0.6461 -2.7025 0.8620 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098908916.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:50 Heat of formation + Delta-G solvation = -20.034243 kcal Electronic energy + Delta-G solvation = -30587.722246 eV Core-core repulsion = 26542.629673 eV Total energy + Delta-G solvation = -4045.092573 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.61381 -39.92019 -38.64639 -37.45977 -34.60453 -34.12732 -33.54673 -31.58448 -31.29893 -31.23200 -29.12018 -27.62518 -24.88466 -24.63160 -24.40229 -23.39938 -21.54777 -20.98223 -20.32806 -19.63580 -18.86667 -18.46847 -17.41922 -17.08630 -16.57978 -16.20328 -15.91655 -15.10230 -14.98501 -14.88775 -14.54141 -14.36738 -14.24564 -13.94585 -13.79361 -13.69671 -13.51536 -12.84105 -12.64488 -12.49640 -12.24019 -12.18029 -11.60845 -11.52076 -11.15063 -10.82354 -10.75358 -10.63733 -10.43737 -10.34957 -10.31603 -10.23225 -10.09673 -10.01908 -9.99484 -9.46329 -9.41415 -9.26217 -9.20224 -8.56813 -8.39644 -6.91168 -6.05480 -3.12475 0.46014 0.93139 2.47244 3.14056 3.19140 3.45031 3.51597 3.57542 3.68200 3.86301 4.42447 4.48935 4.58921 4.60240 4.70034 4.89234 4.91291 4.95476 5.12388 5.18615 5.37432 5.43592 5.53518 5.66600 5.67817 5.68833 5.76426 5.84528 5.96675 5.98542 5.99746 6.02908 6.09935 6.13080 6.21947 6.37864 6.43783 6.45979 6.50209 6.56211 6.64096 6.68605 6.88097 7.02271 7.08968 7.27126 7.78992 7.85893 7.99263 8.49453 8.56599 9.03151 9.84488 10.48481 11.30157 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.009273 B = 0.003994 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3018.872692 B = 7008.148767 C = 8769.310887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.024 4.024 3 Si 1.070 2.930 4 H -0.292 1.292 5 H -0.293 1.293 6 H -0.290 1.290 7 C -0.333 4.333 8 H 0.063 0.937 9 N -0.600 5.600 10 C 0.128 3.872 11 C -0.107 4.107 12 H 0.075 0.925 13 C -0.115 4.115 14 C -0.123 4.123 15 C -0.119 4.119 16 C 0.157 3.843 17 N -0.696 5.696 18 C 0.554 3.446 19 O -0.519 6.519 20 C -0.128 4.128 21 C -0.060 4.060 22 C -0.133 4.133 23 C -0.069 4.069 24 C -0.150 4.150 25 C 0.565 3.435 26 N -0.853 5.853 27 O -0.531 6.531 28 C 0.000 4.000 29 C 0.140 3.860 30 H 0.270 0.730 31 H 0.026 0.974 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.393 0.607 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.129 0.871 43 H 0.400 0.600 44 H 0.405 0.595 45 H 0.151 0.849 46 H 0.076 0.924 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.044 -8.957 18.416 22.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.226 4.226 3 Si 0.900 3.100 4 H -0.219 1.219 5 H -0.220 1.220 6 H -0.217 1.217 7 C -0.461 4.461 8 H 0.081 0.919 9 N -0.324 5.324 10 C 0.002 3.998 11 C -0.127 4.127 12 H 0.094 0.906 13 C -0.153 4.153 14 C -0.161 4.161 15 C -0.158 4.158 16 C 0.070 3.930 17 N -0.346 5.346 18 C 0.340 3.660 19 O -0.396 6.396 20 C -0.132 4.132 21 C -0.079 4.079 22 C -0.151 4.151 23 C -0.088 4.088 24 C -0.153 4.153 25 C 0.350 3.650 26 N -0.417 5.417 27 O -0.408 6.408 28 C -0.020 4.020 29 C 0.013 3.987 30 H 0.081 0.919 31 H 0.044 0.956 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.228 0.772 40 H 0.150 0.850 41 H 0.153 0.847 42 H 0.147 0.853 43 H 0.229 0.771 44 H 0.236 0.764 45 H 0.169 0.831 46 H 0.094 0.906 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 6.399 -6.861 17.813 20.132 hybrid contribution 1.090 -1.619 0.377 1.987 sum 7.489 -8.480 18.190 21.421 Atomic orbital electron populations 1.70682 1.06558 1.30471 1.47615 1.25801 0.96618 1.01130 0.99083 0.83460 0.74107 0.75621 0.76793 1.21875 1.21987 1.21669 1.19714 0.96702 0.86677 1.42981 0.91907 1.45208 1.36633 1.00003 1.50566 1.21913 0.98420 0.87058 0.92434 1.23000 0.97410 0.94004 0.98332 0.90622 1.22428 0.97827 0.95996 0.99041 1.22507 0.98253 0.97012 0.98290 1.23004 0.96896 0.93268 1.02612 1.22238 0.92684 0.95076 0.83009 1.45672 1.16203 1.51651 1.21085 1.18057 0.86042 0.78702 0.83230 1.90821 1.17638 1.56619 1.74497 1.20108 0.95034 1.01624 0.96407 1.21581 0.93737 0.96504 0.96036 1.21017 1.00440 0.99073 0.94615 1.21402 0.92670 0.95754 0.98935 1.19799 0.95170 1.03169 0.97140 1.18230 0.86289 0.79277 0.81162 1.43723 1.18735 1.55983 1.23292 1.90867 1.17933 1.57769 1.74210 1.21437 1.00586 0.90066 0.89924 1.21933 0.90176 0.96744 0.89854 0.91904 0.95608 0.93341 0.91114 0.92011 0.91861 0.92073 0.90609 0.91309 0.77153 0.85028 0.84668 0.85338 0.77084 0.76378 0.83106 0.90555 0.95048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.97 12.77 55.49 0.71 -28.26 16 2 C -0.02 -0.70 5.14 -17.43 -0.09 -0.79 16 3 Si 1.07 26.43 29.98 -169.99 -5.10 21.33 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.33 -9.54 10.22 -15.06 -0.15 -9.69 16 8 H 0.06 1.78 7.93 -52.49 -0.42 1.36 16 9 N -0.60 -15.33 3.22 -168.70 -0.54 -15.87 16 10 C 0.13 2.62 6.75 -2.26 -0.02 2.60 16 11 C -0.11 -1.75 3.66 -88.15 -0.32 -2.07 16 12 H 0.08 1.12 7.74 -51.93 -0.40 0.72 16 13 C -0.11 -1.54 6.36 -25.17 -0.16 -1.70 16 14 C -0.12 -1.61 6.90 -24.79 -0.17 -1.78 16 15 C -0.12 -1.99 5.75 -23.94 -0.14 -2.12 16 16 C 0.16 2.91 0.92 -128.35 -0.12 2.79 16 17 N -0.70 -11.65 5.24 -45.35 -0.24 -11.89 16 18 C 0.55 10.16 6.90 -12.32 -0.08 10.07 16 19 O -0.52 -11.62 13.96 5.32 0.07 -11.55 16 20 C -0.13 -1.91 5.87 -105.02 -0.62 -2.53 16 21 C -0.06 -0.65 9.54 -39.10 -0.37 -1.02 16 22 C -0.13 -1.12 10.02 -39.70 -0.40 -1.52 16 23 C -0.07 -0.58 9.54 -39.10 -0.37 -0.95 16 24 C -0.15 -1.80 5.87 -105.02 -0.62 -2.42 16 25 C 0.56 6.96 8.05 -12.32 -0.10 6.86 16 26 N -0.85 -5.98 8.82 30.53 0.27 -5.71 16 27 O -0.53 -9.05 17.18 5.32 0.09 -8.96 16 28 C 0.00 -0.01 9.14 -38.78 -0.35 -0.36 16 29 C 0.14 3.41 4.05 -2.48 -0.01 3.40 16 30 H 0.27 8.64 6.45 -40.82 -0.26 8.38 16 31 H 0.03 0.53 7.21 -51.93 -0.37 0.16 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.98 7.19 -51.93 -0.37 0.60 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 1.34 7.26 -51.93 -0.38 0.96 16 38 H 0.07 1.21 6.82 -51.93 -0.35 0.85 16 39 H 0.39 5.33 6.35 -40.82 -0.26 5.07 16 40 H 0.13 1.15 6.39 -52.49 -0.34 0.82 16 41 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.13 0.55 6.39 -52.49 -0.34 0.22 16 43 H 0.40 1.47 6.85 -40.82 -0.28 1.19 16 44 H 0.41 2.33 8.93 -40.82 -0.36 1.96 16 45 H 0.15 2.66 7.23 -52.49 -0.38 2.28 16 46 H 0.08 2.18 6.04 -51.93 -0.31 1.87 16 47 H 0.03 0.81 6.87 -51.93 -0.36 0.46 16 LS Contribution 373.46 15.07 5.63 5.63 Total: -1.00 -38.47 373.46 -9.29 -47.76 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -6.09 Total: 8.75 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -4.09 Total: -1.23 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: 0.20 Total: -61.74 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: 0.17 Total: -20.50 kcal Atomic # 14 Polarization: 26.43 SS G_CDS: -5.10 Total: 21.33 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -38.47 -9.29 -47.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098908916.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.727 kcal (2) G-P(sol) polarization free energy of solvation -38.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds