Wall clock time and date at job start Wed Apr 1 2020 02:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86802 * 120.00338 * 2 1 4 4 H 1.48499 * 109.46783 * 270.00290 * 3 2 1 5 5 H 1.48499 * 109.46891 * 29.99756 * 3 2 1 6 6 H 1.48494 * 109.47275 * 149.99945 * 3 2 1 7 7 C 1.38952 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00317 * 0.02562 * 7 2 1 9 9 N 1.37103 * 120.00037 * 179.97438 * 7 2 1 10 10 C 1.34771 * 120.00231 * 180.02562 * 9 7 2 11 11 O 1.21298 * 119.99913 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00466 * 180.02562 * 10 9 7 13 13 N 1.46887 * 109.47447 * 180.02562 * 12 10 9 14 14 C 1.50657 * 111.00283 * 81.90984 * 13 12 10 15 15 H 1.09006 * 115.87425 * 295.93480 * 14 13 12 16 16 C 1.55848 * 101.03062 * 170.24034 * 14 13 12 17 17 C 1.54842 * 103.51766 * 327.00392 * 16 14 13 18 18 C 1.50649 * 111.00204 * 189.99992 * 13 12 10 19 19 H 1.09001 * 115.88171 * 63.34837 * 18 13 12 20 20 C 1.55852 * 101.02810 * 297.65167 * 18 13 12 21 21 H 1.09003 * 110.61171 * 85.67138 * 20 18 13 22 22 N 1.46495 * 110.61059 * 208.49485 * 20 18 13 23 23 C 1.34774 * 120.00518 * 274.07042 * 22 20 18 24 24 O 1.21562 * 119.99679 * 0.02562 * 23 22 20 25 25 C 1.47846 * 120.00515 * 180.02562 * 23 22 20 26 26 C 1.39572 * 120.14475 * 180.02562 * 25 23 22 27 27 C 1.37958 * 119.85281 * 180.02562 * 26 25 23 28 28 C 1.38360 * 120.14483 * 359.97438 * 27 26 25 29 29 C 1.38363 * 120.29308 * 0.26765 * 28 27 26 30 30 C 1.37964 * 120.14254 * 359.50098 * 29 28 27 31 31 C 1.54834 * 103.65863 * 327.08322 * 20 18 13 32 32 H 0.97005 * 120.00224 * 0.02562 * 1 2 3 33 33 H 0.97008 * 119.99705 * 0.02562 * 9 7 2 34 34 H 1.09000 * 109.46869 * 60.00103 * 12 10 9 35 35 H 1.09009 * 109.46976 * 300.00552 * 12 10 9 36 36 H 1.08999 * 110.61528 * 85.51238 * 16 14 13 37 37 H 1.08997 * 110.61186 * 208.34344 * 16 14 13 38 38 H 1.08996 * 110.61242 * 241.49339 * 17 16 14 39 39 H 1.08998 * 110.61051 * 118.50905 * 17 16 14 40 40 H 0.97006 * 119.99890 * 94.08174 * 22 20 18 41 41 H 1.07999 * 120.07654 * 359.97438 * 26 25 23 42 42 H 1.08001 * 119.93099 * 179.97438 * 27 26 25 43 43 H 1.08002 * 119.85636 * 179.97438 * 28 27 26 44 44 H 1.07994 * 119.92778 * 179.74563 * 29 28 27 45 45 H 1.07993 * 120.07388 * 180.24932 * 30 29 28 46 46 H 1.09003 * 110.61362 * 118.42584 * 31 20 18 47 47 H 1.08994 * 110.61178 * 241.41335 * 31 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5456 1.4401 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3706 0.0000 11 8 3.4472 -3.4210 0.0000 12 6 5.5607 -2.3707 0.0000 13 7 6.0503 -3.7556 -0.0006 14 6 6.0436 -4.3300 -1.3933 15 1 5.0644 -4.4321 -1.8612 16 6 6.8252 -5.6599 -1.1711 17 6 7.8401 -5.3016 -0.0580 18 6 7.5361 -3.8031 0.2436 19 1 7.8713 -3.4302 1.2114 20 6 8.0673 -3.0251 -0.9980 21 1 8.0680 -1.9519 -0.8069 22 7 9.4111 -3.4840 -1.3580 23 6 10.4908 -2.9444 -0.7584 24 8 10.3495 -2.0771 0.0816 25 6 11.8470 -3.4073 -1.1221 26 6 12.9671 -2.8508 -0.5026 27 6 14.2298 -3.2868 -0.8470 28 6 14.3872 -4.2738 -1.8038 29 6 13.2813 -4.8261 -2.4253 30 6 12.0127 -4.4024 -2.0867 31 6 7.0532 -3.3796 -2.1130 32 1 -0.4851 0.8401 -0.0004 33 1 3.8648 -0.3633 -0.0004 34 1 5.9240 -1.8569 0.8900 35 1 5.9240 -1.8567 -0.8900 36 1 6.1520 -6.4494 -0.8369 37 1 7.3419 -5.9584 -2.0832 38 1 8.8621 -5.4210 -0.4176 39 1 7.6700 -5.9135 0.8279 40 1 9.5238 -4.1763 -2.0281 41 1 12.8457 -2.0801 0.2441 42 1 15.0975 -2.8569 -0.3687 43 1 15.3780 -4.6114 -2.0702 44 1 13.4111 -5.5932 -3.1743 45 1 11.1501 -4.8370 -2.5696 46 1 6.5491 -2.4825 -2.4727 47 1 7.5503 -3.8968 -2.9335 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108868243.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:09 Heat of formation + Delta-G solvation = -0.131558 kcal Electronic energy + Delta-G solvation = -29818.566593 eV Core-core repulsion = 25774.337065 eV Total energy + Delta-G solvation = -4044.229528 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.44175 -40.08997 -38.45182 -37.92221 -34.63525 -33.88938 -32.08600 -31.75938 -31.51657 -31.37642 -29.85648 -28.58095 -26.65389 -24.34256 -23.93887 -23.01032 -22.17285 -21.05762 -20.27137 -19.60753 -19.18552 -18.45431 -18.09061 -16.80725 -16.58332 -16.01519 -15.89339 -15.60141 -15.33222 -14.96999 -14.86841 -14.68061 -14.40858 -14.05420 -13.75312 -13.33863 -13.18718 -12.90592 -12.84223 -12.78719 -12.40352 -12.19602 -12.12023 -12.00039 -11.84606 -11.60636 -11.55660 -11.42453 -11.12897 -10.94121 -10.75111 -10.55529 -10.26160 -10.19719 -9.93658 -9.54131 -9.50944 -9.46414 -9.35046 -8.59812 -8.13927 -8.09662 -6.26973 -3.77979 0.42984 0.89670 2.55000 2.81818 3.06952 3.10117 3.18281 3.47122 3.78578 3.86061 4.14146 4.25332 4.32306 4.44529 4.46605 4.51622 4.58735 4.68454 4.89714 4.93586 5.01072 5.03631 5.04807 5.16647 5.23645 5.29425 5.32235 5.35824 5.50552 5.51532 5.53759 5.74758 5.75492 5.83634 5.84141 5.87640 5.93071 5.98048 5.98406 6.09541 6.14333 6.26259 6.29734 6.41113 6.77355 7.07506 7.19872 7.62959 7.92985 8.19071 8.65410 9.00150 9.47573 9.89757 10.86288 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.019303 B = 0.002409 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.198996 B =11620.936848 C =12582.735071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.040 3.960 3 Si 0.878 3.122 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.302 4.302 8 H 0.119 0.881 9 N -0.594 5.594 10 C 0.457 3.543 11 O -0.558 6.558 12 C 0.017 3.983 13 N -0.459 5.459 14 C 0.057 3.943 15 H 0.124 0.876 16 C -0.114 4.114 17 C -0.112 4.112 18 C 0.037 3.963 19 H 0.116 0.884 20 C 0.112 3.888 21 H 0.094 0.906 22 N -0.710 5.710 23 C 0.556 3.444 24 O -0.533 6.533 25 C -0.133 4.133 26 C -0.060 4.060 27 C -0.128 4.128 28 C -0.096 4.096 29 C -0.128 4.128 30 C -0.087 4.087 31 C -0.164 4.164 32 H 0.273 0.727 33 H 0.370 0.630 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.398 0.602 41 H 0.136 0.864 42 H 0.130 0.870 43 H 0.127 0.873 44 H 0.129 0.871 45 H 0.125 0.875 46 H 0.082 0.918 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.040 -8.675 -6.875 32.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.162 4.162 3 Si 0.705 3.295 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.431 4.431 8 H 0.137 0.863 9 N -0.234 5.234 10 C 0.242 3.758 11 O -0.439 6.439 12 C -0.115 4.115 13 N -0.181 5.181 14 C -0.052 4.052 15 H 0.142 0.858 16 C -0.152 4.152 17 C -0.150 4.150 18 C -0.073 4.073 19 H 0.134 0.866 20 C 0.006 3.994 21 H 0.112 0.888 22 N -0.362 5.362 23 C 0.343 3.657 24 O -0.410 6.410 25 C -0.136 4.136 26 C -0.079 4.079 27 C -0.146 4.146 28 C -0.115 4.115 29 C -0.146 4.146 30 C -0.106 4.106 31 C -0.203 4.203 32 H 0.083 0.917 33 H 0.202 0.798 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.235 0.765 41 H 0.154 0.846 42 H 0.147 0.853 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.143 0.857 46 H 0.101 0.899 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 28.885 -8.941 -5.819 30.792 hybrid contribution 1.111 1.722 -0.933 2.252 sum 29.996 -7.219 -6.751 31.582 Atomic orbital electron populations 1.69619 1.05608 1.27397 1.49734 1.25026 0.95483 0.97919 0.97802 0.86691 0.79882 0.84140 0.78822 1.19722 1.20206 1.19440 1.19415 0.79245 0.96553 1.47865 0.86320 1.42222 1.07488 1.06140 1.67585 1.19595 0.87906 0.84512 0.83749 1.90557 1.69347 1.30877 1.53121 1.22216 0.95984 0.91121 1.02219 1.67482 1.11357 1.16470 1.22772 1.24549 0.98046 0.93805 0.88774 0.85794 1.22601 0.97504 0.97280 0.97845 1.22523 0.98292 0.94876 0.99301 1.24877 0.88608 0.96189 0.97657 0.86645 1.22868 0.80741 1.00171 0.95661 0.88756 1.45968 1.05649 1.41564 1.43002 1.18309 0.84375 0.81691 0.81294 1.90797 1.86665 1.31138 1.32405 1.19997 0.93524 0.99847 1.00198 1.21333 0.91209 0.97851 0.97526 1.21202 0.97246 0.97805 0.98341 1.21404 0.99095 0.95590 0.95373 1.21128 0.92253 1.00654 1.00532 1.21321 0.97902 0.95499 0.95885 1.23629 0.97239 1.01711 0.97696 0.91692 0.79796 0.89246 0.92235 0.90662 0.91787 0.91537 0.91019 0.76541 0.84571 0.85256 0.85549 0.85342 0.85699 0.89940 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.12 13.96 55.50 0.77 -25.35 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.79 27.74 -169.99 -4.71 15.08 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -5.59 6.52 56.52 0.37 -5.22 16 7 C -0.30 -8.65 10.16 -14.93 -0.15 -8.80 16 8 H 0.12 3.87 7.39 -52.49 -0.39 3.49 16 9 N -0.59 -14.42 5.09 -10.96 -0.06 -14.48 16 10 C 0.46 10.55 7.72 -10.99 -0.08 10.46 16 11 O -0.56 -15.10 15.58 5.54 0.09 -15.02 16 12 C 0.02 0.29 4.83 -4.98 -0.02 0.26 16 13 N -0.46 -7.34 5.09 -206.77 -1.05 -8.39 16 14 C 0.06 0.77 4.57 -62.35 -0.28 0.49 16 15 H 0.12 1.97 7.96 -51.93 -0.41 1.56 16 16 C -0.11 -1.24 6.44 -24.24 -0.16 -1.40 16 17 C -0.11 -1.21 6.32 -24.24 -0.15 -1.36 16 18 C 0.04 0.47 4.80 -62.56 -0.30 0.17 16 19 H 0.12 1.58 8.14 -51.93 -0.42 1.16 16 20 C 0.11 1.27 2.26 -65.44 -0.15 1.12 16 21 H 0.09 1.24 7.19 -51.93 -0.37 0.86 16 22 N -0.71 -6.55 3.58 -52.34 -0.19 -6.74 16 23 C 0.56 6.24 7.77 -12.33 -0.10 6.14 16 24 O -0.53 -8.00 16.08 5.31 0.09 -7.91 16 25 C -0.13 -1.20 5.87 -104.97 -0.62 -1.81 16 26 C -0.06 -0.52 9.60 -39.19 -0.38 -0.90 16 27 C -0.13 -0.83 10.03 -39.64 -0.40 -1.22 16 28 C -0.10 -0.53 10.04 -39.49 -0.40 -0.93 16 29 C -0.13 -0.70 10.03 -39.64 -0.40 -1.10 16 30 C -0.09 -0.57 9.54 -39.18 -0.37 -0.94 16 31 C -0.16 -1.77 5.41 -24.04 -0.13 -1.90 16 32 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.37 7.96 5.76 -40.82 -0.24 7.72 16 34 H 0.09 1.45 8.09 -51.93 -0.42 1.03 16 35 H 0.06 0.90 5.09 -51.92 -0.26 0.64 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.53 7.83 -51.93 -0.41 0.12 16 38 H 0.07 0.60 6.48 -51.93 -0.34 0.26 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.40 2.61 6.05 -40.82 -0.25 2.36 16 41 H 0.14 1.23 7.65 -52.49 -0.40 0.83 16 42 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 43 H 0.13 0.40 8.06 -52.49 -0.42 -0.02 16 44 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 45 H 0.13 0.53 6.41 -52.49 -0.34 0.20 16 46 H 0.08 0.95 6.95 -51.93 -0.36 0.59 16 47 H 0.08 0.66 7.36 -51.93 -0.38 0.27 16 LS Contribution 375.85 15.07 5.66 5.66 Total: -1.00 -35.46 375.85 -9.85 -45.31 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -6.27 Total: 12.52 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -4.18 Total: -0.69 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.52 Total: -54.95 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: 0.17 Total: -22.93 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.71 Total: 15.08 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.46 -9.85 -45.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108868243.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.180 kcal (2) G-P(sol) polarization free energy of solvation -35.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds